Experiment: rhizosphere sample 9; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17475 and ABZR87_RS17480 overlap by 1 nucleotides ABZR87_RS17480 and ABZR87_RS17485 overlap by 4 nucleotides ABZR87_RS17485 and ABZR87_RS17490 are separated by 361 nucleotides
ABZR87_RS17475: ABZR87_RS17475 - 3-hydroxyisobutyrate dehydrogenase, at 280,587 to 281,480
_RS17475
ABZR87_RS17480: ABZR87_RS17480 - enoyl-CoA hydratase, at 281,480 to 282,277
_RS17480
ABZR87_RS17485: ABZR87_RS17485 - enoyl-CoA hydratase/isomerase family protein, at 282,274 to 283,425
_RS17485
ABZR87_RS17490: ABZR87_RS17490 - phospholipase D-like domain-containing protein, at 283,787 to 285,556
_RS17490
Position (kb) 282
283
284 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 281.286 kb on + strand, within ABZR87_RS17475 at 281.370 kb on + strand, within ABZR87_RS17475 at 281.370 kb on + strand, within ABZR87_RS17475 at 281.458 kb on - strand at 282.366 kb on + strand at 282.530 kb on - strand, within ABZR87_RS17485 at 282.595 kb on + strand, within ABZR87_RS17485 at 282.595 kb on + strand, within ABZR87_RS17485 at 282.811 kb on + strand, within ABZR87_RS17485 at 282.811 kb on + strand, within ABZR87_RS17485 at 282.811 kb on + strand, within ABZR87_RS17485 at 282.811 kb on + strand, within ABZR87_RS17485 at 282.812 kb on - strand, within ABZR87_RS17485 at 282.812 kb on - strand, within ABZR87_RS17485 at 282.812 kb on - strand, within ABZR87_RS17485 at 283.034 kb on - strand, within ABZR87_RS17485 at 283.034 kb on - strand, within ABZR87_RS17485 at 283.034 kb on - strand, within ABZR87_RS17485 at 283.493 kb on + strand at 283.493 kb on + strand at 283.493 kb on + strand at 283.494 kb on - strand at 283.494 kb on - strand at 283.494 kb on - strand at 283.527 kb on + strand at 283.527 kb on + strand at 283.527 kb on + strand at 283.527 kb on + strand at 283.527 kb on + strand at 283.528 kb on - strand at 283.528 kb on - strand at 283.528 kb on - strand at 283.533 kb on + strand at 283.533 kb on + strand at 283.538 kb on + strand at 283.538 kb on + strand at 283.539 kb on - strand at 283.539 kb on - strand at 283.578 kb on - strand at 283.628 kb on - strand at 283.751 kb on - strand at 283.751 kb on - strand at 283.751 kb on - strand at 283.823 kb on + strand at 283.823 kb on + strand at 283.823 kb on + strand at 283.824 kb on - strand at 283.824 kb on - strand at 283.824 kb on - strand at 283.824 kb on - strand at 283.998 kb on - strand, within ABZR87_RS17490 at 284.075 kb on + strand, within ABZR87_RS17490 at 284.075 kb on + strand, within ABZR87_RS17490 at 284.075 kb on + strand, within ABZR87_RS17490 at 284.076 kb on - strand, within ABZR87_RS17490 at 284.076 kb on - strand, within ABZR87_RS17490 at 284.076 kb on - strand, within ABZR87_RS17490 at 284.076 kb on - strand, within ABZR87_RS17490 at 284.076 kb on - strand, within ABZR87_RS17490 at 284.093 kb on + strand, within ABZR87_RS17490 at 284.204 kb on + strand, within ABZR87_RS17490 at 284.205 kb on - strand, within ABZR87_RS17490 at 284.205 kb on - strand, within ABZR87_RS17490 at 284.205 kb on - strand, within ABZR87_RS17490 at 284.295 kb on - strand, within ABZR87_RS17490 at 284.309 kb on + strand, within ABZR87_RS17490 at 284.321 kb on + strand, within ABZR87_RS17490 at 284.321 kb on + strand, within ABZR87_RS17490 at 284.321 kb on + strand, within ABZR87_RS17490 at 284.321 kb on + strand, within ABZR87_RS17490 at 284.321 kb on + strand, within ABZR87_RS17490 at 284.322 kb on - strand, within ABZR87_RS17490 at 284.322 kb on - strand, within ABZR87_RS17490 at 284.322 kb on - strand, within ABZR87_RS17490 at 284.322 kb on - strand, within ABZR87_RS17490 at 284.328 kb on - strand, within ABZR87_RS17490 at 284.393 kb on + strand, within ABZR87_RS17490 at 284.414 kb on + strand, within ABZR87_RS17490 at 284.414 kb on + strand, within ABZR87_RS17490 at 284.414 kb on + strand, within ABZR87_RS17490 at 284.415 kb on - strand, within ABZR87_RS17490
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 9; outgrowth in LB remove 281,286 + ABZR87_RS17475 0.78 +1.8 281,370 + ABZR87_RS17475 0.88 -1.9 281,370 + ABZR87_RS17475 0.88 -0.4 281,458 - -0.6 282,366 + +1.2 282,530 - ABZR87_RS17485 0.22 +1.4 282,595 + ABZR87_RS17485 0.28 +2.2 282,595 + ABZR87_RS17485 0.28 -1.5 282,811 + ABZR87_RS17485 0.47 +1.4 282,811 + ABZR87_RS17485 0.47 -2.2 282,811 + ABZR87_RS17485 0.47 +0.0 282,811 + ABZR87_RS17485 0.47 +0.4 282,812 - ABZR87_RS17485 0.47 -0.1 282,812 - ABZR87_RS17485 0.47 -0.0 282,812 - ABZR87_RS17485 0.47 -0.6 283,034 - ABZR87_RS17485 0.66 -0.6 283,034 - ABZR87_RS17485 0.66 -0.5 283,034 - ABZR87_RS17485 0.66 +0.2 283,493 + -0.9 283,493 + -0.0 283,493 + +2.0 283,494 - +0.2 283,494 - -3.4 283,494 - +0.0 283,527 + +0.8 283,527 + -0.7 283,527 + -2.0 283,527 + -1.3 283,527 + +1.9 283,528 - +2.0 283,528 - +0.0 283,528 - +3.0 283,533 + -0.8 283,533 + -0.2 283,538 + +0.3 283,538 + +1.1 283,539 - +2.4 283,539 - +0.2 283,578 - +0.9 283,628 - -1.7 283,751 - +0.5 283,751 - +0.9 283,751 - +0.4 283,823 + +0.6 283,823 + +0.1 283,823 + +0.3 283,824 - +0.8 283,824 - +0.7 283,824 - +0.2 283,824 - +0.9 283,998 - ABZR87_RS17490 0.12 -0.9 284,075 + ABZR87_RS17490 0.16 -1.4 284,075 + ABZR87_RS17490 0.16 -0.2 284,075 + ABZR87_RS17490 0.16 +0.2 284,076 - ABZR87_RS17490 0.16 -0.0 284,076 - ABZR87_RS17490 0.16 +0.0 284,076 - ABZR87_RS17490 0.16 -1.4 284,076 - ABZR87_RS17490 0.16 +0.2 284,076 - ABZR87_RS17490 0.16 +0.3 284,093 + ABZR87_RS17490 0.17 -1.4 284,204 + ABZR87_RS17490 0.24 -0.7 284,205 - ABZR87_RS17490 0.24 -0.7 284,205 - ABZR87_RS17490 0.24 -1.2 284,205 - ABZR87_RS17490 0.24 +2.6 284,295 - ABZR87_RS17490 0.29 -0.8 284,309 + ABZR87_RS17490 0.29 +0.2 284,321 + ABZR87_RS17490 0.30 -1.4 284,321 + ABZR87_RS17490 0.30 +0.1 284,321 + ABZR87_RS17490 0.30 +0.1 284,321 + ABZR87_RS17490 0.30 +1.3 284,321 + ABZR87_RS17490 0.30 -1.5 284,322 - ABZR87_RS17490 0.30 -1.7 284,322 - ABZR87_RS17490 0.30 +0.7 284,322 - ABZR87_RS17490 0.30 -0.5 284,322 - ABZR87_RS17490 0.30 +0.3 284,328 - ABZR87_RS17490 0.31 -1.2 284,393 + ABZR87_RS17490 0.34 +0.3 284,414 + ABZR87_RS17490 0.35 +0.7 284,414 + ABZR87_RS17490 0.35 +0.3 284,414 + ABZR87_RS17490 0.35 +0.3 284,415 - ABZR87_RS17490 0.35 -0.1
Or see this region's nucleotide sequence