Experiment: rhizosphere sample 9; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17435 and ABZR87_RS17440 are separated by 134 nucleotides ABZR87_RS17440 and ABZR87_RS17445 overlap by 4 nucleotides
ABZR87_RS17435: ABZR87_RS17435 - LysR family transcriptional regulator, at 270,263 to 271,156
_RS17435
ABZR87_RS17440: ABZR87_RS17440 - (2Fe-2S)-binding protein, at 271,291 to 271,755
_RS17440
ABZR87_RS17445: ABZR87_RS17445 - molybdopterin cofactor-binding domain-containing protein, at 271,752 to 273,956
_RS17445
Position (kb) 271
272 Strain fitness (log2 ratio) -2
-1
0
1
2 at 270.352 kb on - strand at 270.360 kb on + strand, within ABZR87_RS17435 at 270.360 kb on + strand, within ABZR87_RS17435 at 270.360 kb on + strand, within ABZR87_RS17435 at 270.360 kb on + strand, within ABZR87_RS17435 at 270.361 kb on - strand, within ABZR87_RS17435 at 270.570 kb on + strand, within ABZR87_RS17435 at 270.711 kb on + strand, within ABZR87_RS17435 at 270.712 kb on - strand, within ABZR87_RS17435 at 270.718 kb on - strand, within ABZR87_RS17435 at 270.734 kb on + strand, within ABZR87_RS17435 at 270.735 kb on - strand, within ABZR87_RS17435 at 270.735 kb on - strand, within ABZR87_RS17435 at 270.735 kb on - strand, within ABZR87_RS17435 at 270.735 kb on - strand, within ABZR87_RS17435 at 271.087 kb on + strand at 271.087 kb on + strand at 271.088 kb on - strand at 271.152 kb on + strand at 271.152 kb on + strand at 271.152 kb on + strand at 271.153 kb on - strand at 271.177 kb on + strand at 271.188 kb on - strand at 271.238 kb on + strand at 271.239 kb on - strand at 271.239 kb on - strand at 271.303 kb on - strand at 271.303 kb on - strand at 271.559 kb on + strand, within ABZR87_RS17440 at 271.700 kb on - strand, within ABZR87_RS17440 at 272.067 kb on + strand, within ABZR87_RS17445 at 272.067 kb on + strand, within ABZR87_RS17445 at 272.067 kb on + strand, within ABZR87_RS17445 at 272.068 kb on - strand, within ABZR87_RS17445 at 272.091 kb on + strand, within ABZR87_RS17445 at 272.092 kb on - strand, within ABZR87_RS17445 at 272.092 kb on - strand, within ABZR87_RS17445 at 272.092 kb on - strand, within ABZR87_RS17445 at 272.092 kb on - strand, within ABZR87_RS17445 at 272.127 kb on + strand, within ABZR87_RS17445 at 272.127 kb on + strand, within ABZR87_RS17445 at 272.265 kb on + strand, within ABZR87_RS17445 at 272.266 kb on - strand, within ABZR87_RS17445 at 272.266 kb on - strand, within ABZR87_RS17445 at 272.266 kb on - strand, within ABZR87_RS17445 at 272.343 kb on + strand, within ABZR87_RS17445 at 272.343 kb on + strand, within ABZR87_RS17445 at 272.343 kb on + strand, within ABZR87_RS17445 at 272.343 kb on + strand, within ABZR87_RS17445 at 272.344 kb on - strand, within ABZR87_RS17445 at 272.344 kb on - strand, within ABZR87_RS17445 at 272.344 kb on - strand, within ABZR87_RS17445 at 272.344 kb on - strand, within ABZR87_RS17445 at 272.403 kb on + strand, within ABZR87_RS17445 at 272.403 kb on + strand, within ABZR87_RS17445 at 272.598 kb on + strand, within ABZR87_RS17445 at 272.598 kb on + strand, within ABZR87_RS17445 at 272.598 kb on + strand, within ABZR87_RS17445 at 272.598 kb on + strand, within ABZR87_RS17445 at 272.599 kb on - strand, within ABZR87_RS17445
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 9; outgrowth in LB remove 270,352 - +0.3 270,360 + ABZR87_RS17435 0.11 -0.8 270,360 + ABZR87_RS17435 0.11 -1.1 270,360 + ABZR87_RS17435 0.11 +0.7 270,360 + ABZR87_RS17435 0.11 -0.6 270,361 - ABZR87_RS17435 0.11 +0.9 270,570 + ABZR87_RS17435 0.34 -0.0 270,711 + ABZR87_RS17435 0.50 -1.1 270,712 - ABZR87_RS17435 0.50 -1.5 270,718 - ABZR87_RS17435 0.51 -0.8 270,734 + ABZR87_RS17435 0.53 +1.5 270,735 - ABZR87_RS17435 0.53 +0.7 270,735 - ABZR87_RS17435 0.53 +0.2 270,735 - ABZR87_RS17435 0.53 +0.4 270,735 - ABZR87_RS17435 0.53 -1.3 271,087 + +0.5 271,087 + +0.3 271,088 - -0.0 271,152 + +0.5 271,152 + +0.2 271,152 + -1.1 271,153 - -2.1 271,177 + +1.8 271,188 - -0.8 271,238 + -0.8 271,239 - -0.2 271,239 - +1.2 271,303 - -2.1 271,303 - -0.5 271,559 + ABZR87_RS17440 0.58 -1.7 271,700 - ABZR87_RS17440 0.88 +1.4 272,067 + ABZR87_RS17445 0.14 -0.2 272,067 + ABZR87_RS17445 0.14 +0.1 272,067 + ABZR87_RS17445 0.14 -0.8 272,068 - ABZR87_RS17445 0.14 -0.9 272,091 + ABZR87_RS17445 0.15 -0.7 272,092 - ABZR87_RS17445 0.15 -0.4 272,092 - ABZR87_RS17445 0.15 -0.0 272,092 - ABZR87_RS17445 0.15 -0.4 272,092 - ABZR87_RS17445 0.15 -2.3 272,127 + ABZR87_RS17445 0.17 -0.3 272,127 + ABZR87_RS17445 0.17 -0.5 272,265 + ABZR87_RS17445 0.23 -2.4 272,266 - ABZR87_RS17445 0.23 -1.4 272,266 - ABZR87_RS17445 0.23 -1.3 272,266 - ABZR87_RS17445 0.23 -0.8 272,343 + ABZR87_RS17445 0.27 +0.7 272,343 + ABZR87_RS17445 0.27 -0.6 272,343 + ABZR87_RS17445 0.27 +1.7 272,343 + ABZR87_RS17445 0.27 -0.7 272,344 - ABZR87_RS17445 0.27 -1.2 272,344 - ABZR87_RS17445 0.27 -0.3 272,344 - ABZR87_RS17445 0.27 -0.3 272,344 - ABZR87_RS17445 0.27 +0.3 272,403 + ABZR87_RS17445 0.30 -0.4 272,403 + ABZR87_RS17445 0.30 -1.3 272,598 + ABZR87_RS17445 0.38 -1.1 272,598 + ABZR87_RS17445 0.38 +1.8 272,598 + ABZR87_RS17445 0.38 -1.2 272,598 + ABZR87_RS17445 0.38 +1.8 272,599 - ABZR87_RS17445 0.38 +0.2
Or see this region's nucleotide sequence