Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17440

Experiment: rhizosphere sample 9; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17435 and ABZR87_RS17440 are separated by 134 nucleotidesABZR87_RS17440 and ABZR87_RS17445 overlap by 4 nucleotides ABZR87_RS17435: ABZR87_RS17435 - LysR family transcriptional regulator, at 270,263 to 271,156 _RS17435 ABZR87_RS17440: ABZR87_RS17440 - (2Fe-2S)-binding protein, at 271,291 to 271,755 _RS17440 ABZR87_RS17445: ABZR87_RS17445 - molybdopterin cofactor-binding domain-containing protein, at 271,752 to 273,956 _RS17445 Position (kb) 271 272Strain fitness (log2 ratio) -2 -1 0 1 2at 270.352 kb on - strandat 270.360 kb on + strand, within ABZR87_RS17435at 270.360 kb on + strand, within ABZR87_RS17435at 270.360 kb on + strand, within ABZR87_RS17435at 270.360 kb on + strand, within ABZR87_RS17435at 270.361 kb on - strand, within ABZR87_RS17435at 270.570 kb on + strand, within ABZR87_RS17435at 270.711 kb on + strand, within ABZR87_RS17435at 270.712 kb on - strand, within ABZR87_RS17435at 270.718 kb on - strand, within ABZR87_RS17435at 270.734 kb on + strand, within ABZR87_RS17435at 270.735 kb on - strand, within ABZR87_RS17435at 270.735 kb on - strand, within ABZR87_RS17435at 270.735 kb on - strand, within ABZR87_RS17435at 270.735 kb on - strand, within ABZR87_RS17435at 271.087 kb on + strandat 271.087 kb on + strandat 271.088 kb on - strandat 271.152 kb on + strandat 271.152 kb on + strandat 271.152 kb on + strandat 271.153 kb on - strandat 271.177 kb on + strandat 271.188 kb on - strandat 271.238 kb on + strandat 271.239 kb on - strandat 271.239 kb on - strandat 271.303 kb on - strandat 271.303 kb on - strandat 271.559 kb on + strand, within ABZR87_RS17440at 271.700 kb on - strand, within ABZR87_RS17440at 272.067 kb on + strand, within ABZR87_RS17445at 272.067 kb on + strand, within ABZR87_RS17445at 272.067 kb on + strand, within ABZR87_RS17445at 272.068 kb on - strand, within ABZR87_RS17445at 272.091 kb on + strand, within ABZR87_RS17445at 272.092 kb on - strand, within ABZR87_RS17445at 272.092 kb on - strand, within ABZR87_RS17445at 272.092 kb on - strand, within ABZR87_RS17445at 272.092 kb on - strand, within ABZR87_RS17445at 272.127 kb on + strand, within ABZR87_RS17445at 272.127 kb on + strand, within ABZR87_RS17445at 272.265 kb on + strand, within ABZR87_RS17445at 272.266 kb on - strand, within ABZR87_RS17445at 272.266 kb on - strand, within ABZR87_RS17445at 272.266 kb on - strand, within ABZR87_RS17445at 272.343 kb on + strand, within ABZR87_RS17445at 272.343 kb on + strand, within ABZR87_RS17445at 272.343 kb on + strand, within ABZR87_RS17445at 272.343 kb on + strand, within ABZR87_RS17445at 272.344 kb on - strand, within ABZR87_RS17445at 272.344 kb on - strand, within ABZR87_RS17445at 272.344 kb on - strand, within ABZR87_RS17445at 272.344 kb on - strand, within ABZR87_RS17445at 272.403 kb on + strand, within ABZR87_RS17445at 272.403 kb on + strand, within ABZR87_RS17445at 272.598 kb on + strand, within ABZR87_RS17445at 272.598 kb on + strand, within ABZR87_RS17445at 272.598 kb on + strand, within ABZR87_RS17445at 272.598 kb on + strand, within ABZR87_RS17445at 272.599 kb on - strand, within ABZR87_RS17445

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 9; outgrowth in LB
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270,352 - +0.3
270,360 + ABZR87_RS17435 0.11 -0.8
270,360 + ABZR87_RS17435 0.11 -1.1
270,360 + ABZR87_RS17435 0.11 +0.7
270,360 + ABZR87_RS17435 0.11 -0.6
270,361 - ABZR87_RS17435 0.11 +0.9
270,570 + ABZR87_RS17435 0.34 -0.0
270,711 + ABZR87_RS17435 0.50 -1.1
270,712 - ABZR87_RS17435 0.50 -1.5
270,718 - ABZR87_RS17435 0.51 -0.8
270,734 + ABZR87_RS17435 0.53 +1.5
270,735 - ABZR87_RS17435 0.53 +0.7
270,735 - ABZR87_RS17435 0.53 +0.2
270,735 - ABZR87_RS17435 0.53 +0.4
270,735 - ABZR87_RS17435 0.53 -1.3
271,087 + +0.5
271,087 + +0.3
271,088 - -0.0
271,152 + +0.5
271,152 + +0.2
271,152 + -1.1
271,153 - -2.1
271,177 + +1.8
271,188 - -0.8
271,238 + -0.8
271,239 - -0.2
271,239 - +1.2
271,303 - -2.1
271,303 - -0.5
271,559 + ABZR87_RS17440 0.58 -1.7
271,700 - ABZR87_RS17440 0.88 +1.4
272,067 + ABZR87_RS17445 0.14 -0.2
272,067 + ABZR87_RS17445 0.14 +0.1
272,067 + ABZR87_RS17445 0.14 -0.8
272,068 - ABZR87_RS17445 0.14 -0.9
272,091 + ABZR87_RS17445 0.15 -0.7
272,092 - ABZR87_RS17445 0.15 -0.4
272,092 - ABZR87_RS17445 0.15 -0.0
272,092 - ABZR87_RS17445 0.15 -0.4
272,092 - ABZR87_RS17445 0.15 -2.3
272,127 + ABZR87_RS17445 0.17 -0.3
272,127 + ABZR87_RS17445 0.17 -0.5
272,265 + ABZR87_RS17445 0.23 -2.4
272,266 - ABZR87_RS17445 0.23 -1.4
272,266 - ABZR87_RS17445 0.23 -1.3
272,266 - ABZR87_RS17445 0.23 -0.8
272,343 + ABZR87_RS17445 0.27 +0.7
272,343 + ABZR87_RS17445 0.27 -0.6
272,343 + ABZR87_RS17445 0.27 +1.7
272,343 + ABZR87_RS17445 0.27 -0.7
272,344 - ABZR87_RS17445 0.27 -1.2
272,344 - ABZR87_RS17445 0.27 -0.3
272,344 - ABZR87_RS17445 0.27 -0.3
272,344 - ABZR87_RS17445 0.27 +0.3
272,403 + ABZR87_RS17445 0.30 -0.4
272,403 + ABZR87_RS17445 0.30 -1.3
272,598 + ABZR87_RS17445 0.38 -1.1
272,598 + ABZR87_RS17445 0.38 +1.8
272,598 + ABZR87_RS17445 0.38 -1.2
272,598 + ABZR87_RS17445 0.38 +1.8
272,599 - ABZR87_RS17445 0.38 +0.2

Or see this region's nucleotide sequence