Experiment: rhizosphere sample 9; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS16980 and ABZR87_RS16985 are separated by 105 nucleotides ABZR87_RS16985 and ABZR87_RS16990 are separated by 83 nucleotides ABZR87_RS16990 and ABZR87_RS16995 are separated by 5 nucleotides ABZR87_RS16995 and ABZR87_RS17000 are separated by 74 nucleotides
ABZR87_RS16980: ABZR87_RS16980 - GlxA family transcriptional regulator, at 162,769 to 163,704
_RS16980
ABZR87_RS16985: ABZR87_RS16985 - DJ-1/PfpI family protein, at 163,810 to 164,496
_RS16985
ABZR87_RS16990: ABZR87_RS16990 - 5'-methylthioadenosine/adenosylhomocysteine nucleosidase, at 164,580 to 165,371
_RS16990
ABZR87_RS16995: ABZR87_RS16995 - lysozyme inhibitor LprI family protein, at 165,377 to 165,832
_RS16995
ABZR87_RS17000: ABZR87_RS17000 - DJ-1/PfpI family protein, at 165,907 to 166,509
_RS17000
Position (kb) 164
165
166 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 163.599 kb on - strand, within ABZR87_RS16980 at 163.599 kb on - strand, within ABZR87_RS16980 at 163.846 kb on + strand at 163.846 kb on + strand at 163.847 kb on - strand at 163.996 kb on - strand, within ABZR87_RS16985 at 163.996 kb on - strand, within ABZR87_RS16985 at 164.104 kb on + strand, within ABZR87_RS16985 at 164.104 kb on + strand, within ABZR87_RS16985 at 164.105 kb on - strand, within ABZR87_RS16985 at 164.105 kb on - strand, within ABZR87_RS16985 at 164.360 kb on - strand, within ABZR87_RS16985 at 164.360 kb on - strand, within ABZR87_RS16985 at 164.548 kb on + strand at 164.548 kb on + strand at 164.548 kb on + strand at 164.548 kb on + strand at 164.548 kb on + strand at 164.549 kb on - strand at 164.549 kb on - strand at 164.549 kb on - strand at 164.549 kb on - strand at 164.827 kb on + strand, within ABZR87_RS16990 at 164.828 kb on - strand, within ABZR87_RS16990 at 164.828 kb on - strand, within ABZR87_RS16990 at 165.321 kb on + strand at 165.321 kb on + strand at 165.378 kb on + strand at 165.378 kb on + strand at 165.379 kb on - strand at 165.399 kb on + strand at 165.399 kb on + strand at 165.400 kb on - strand at 165.483 kb on + strand, within ABZR87_RS16995 at 165.484 kb on - strand, within ABZR87_RS16995 at 165.594 kb on + strand, within ABZR87_RS16995 at 165.594 kb on + strand, within ABZR87_RS16995 at 165.594 kb on + strand, within ABZR87_RS16995 at 165.594 kb on + strand, within ABZR87_RS16995 at 165.594 kb on + strand, within ABZR87_RS16995 at 165.594 kb on + strand, within ABZR87_RS16995 at 165.594 kb on + strand, within ABZR87_RS16995 at 165.594 kb on + strand, within ABZR87_RS16995 at 165.594 kb on + strand, within ABZR87_RS16995 at 165.595 kb on - strand, within ABZR87_RS16995 at 165.595 kb on - strand, within ABZR87_RS16995 at 165.595 kb on - strand, within ABZR87_RS16995 at 165.595 kb on - strand, within ABZR87_RS16995 at 165.595 kb on - strand, within ABZR87_RS16995 at 165.595 kb on - strand, within ABZR87_RS16995 at 165.595 kb on - strand, within ABZR87_RS16995 at 165.595 kb on - strand, within ABZR87_RS16995 at 165.598 kb on + strand, within ABZR87_RS16995 at 165.599 kb on - strand, within ABZR87_RS16995 at 165.599 kb on - strand, within ABZR87_RS16995 at 165.599 kb on - strand, within ABZR87_RS16995 at 165.599 kb on - strand, within ABZR87_RS16995 at 165.690 kb on + strand, within ABZR87_RS16995 at 165.690 kb on + strand, within ABZR87_RS16995 at 165.690 kb on + strand, within ABZR87_RS16995 at 165.690 kb on + strand, within ABZR87_RS16995 at 165.691 kb on - strand, within ABZR87_RS16995 at 165.691 kb on - strand, within ABZR87_RS16995 at 165.853 kb on - strand at 165.853 kb on - strand at 165.883 kb on - strand at 165.949 kb on + strand at 165.949 kb on + strand at 165.950 kb on - strand at 165.954 kb on - strand at 165.954 kb on - strand at 165.983 kb on + strand, within ABZR87_RS17000 at 165.983 kb on + strand, within ABZR87_RS17000 at 165.983 kb on + strand, within ABZR87_RS17000 at 165.984 kb on - strand, within ABZR87_RS17000 at 166.094 kb on + strand, within ABZR87_RS17000 at 166.094 kb on + strand, within ABZR87_RS17000 at 166.094 kb on + strand, within ABZR87_RS17000 at 166.159 kb on - strand, within ABZR87_RS17000 at 166.199 kb on - strand, within ABZR87_RS17000
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 9; outgrowth in LB remove 163,599 - ABZR87_RS16980 0.89 -0.9 163,599 - ABZR87_RS16980 0.89 +1.3 163,846 + -0.4 163,846 + -0.2 163,847 - +0.5 163,996 - ABZR87_RS16985 0.27 +1.8 163,996 - ABZR87_RS16985 0.27 -0.9 164,104 + ABZR87_RS16985 0.43 +1.1 164,104 + ABZR87_RS16985 0.43 +0.1 164,105 - ABZR87_RS16985 0.43 +0.4 164,105 - ABZR87_RS16985 0.43 -2.1 164,360 - ABZR87_RS16985 0.80 -0.0 164,360 - ABZR87_RS16985 0.80 -0.2 164,548 + -0.6 164,548 + -0.7 164,548 + -0.1 164,548 + -0.7 164,548 + -0.4 164,549 - -0.3 164,549 - +0.6 164,549 - -0.1 164,549 - +0.4 164,827 + ABZR87_RS16990 0.31 -0.0 164,828 - ABZR87_RS16990 0.31 +1.1 164,828 - ABZR87_RS16990 0.31 +0.6 165,321 + +0.0 165,321 + -2.2 165,378 + -0.5 165,378 + +0.9 165,379 - -0.8 165,399 + +1.8 165,399 + +1.4 165,400 - -1.5 165,483 + ABZR87_RS16995 0.23 -0.2 165,484 - ABZR87_RS16995 0.23 -0.9 165,594 + ABZR87_RS16995 0.48 +1.2 165,594 + ABZR87_RS16995 0.48 -0.4 165,594 + ABZR87_RS16995 0.48 -1.1 165,594 + ABZR87_RS16995 0.48 -0.3 165,594 + ABZR87_RS16995 0.48 -0.4 165,594 + ABZR87_RS16995 0.48 -0.0 165,594 + ABZR87_RS16995 0.48 -4.1 165,594 + ABZR87_RS16995 0.48 +0.0 165,594 + ABZR87_RS16995 0.48 -0.1 165,595 - ABZR87_RS16995 0.48 +1.1 165,595 - ABZR87_RS16995 0.48 +2.5 165,595 - ABZR87_RS16995 0.48 -0.3 165,595 - ABZR87_RS16995 0.48 -1.7 165,595 - ABZR87_RS16995 0.48 -0.1 165,595 - ABZR87_RS16995 0.48 +0.5 165,595 - ABZR87_RS16995 0.48 +0.6 165,595 - ABZR87_RS16995 0.48 -1.0 165,598 + ABZR87_RS16995 0.48 -2.1 165,599 - ABZR87_RS16995 0.49 +2.1 165,599 - ABZR87_RS16995 0.49 -0.2 165,599 - ABZR87_RS16995 0.49 -0.5 165,599 - ABZR87_RS16995 0.49 -0.8 165,690 + ABZR87_RS16995 0.69 -1.8 165,690 + ABZR87_RS16995 0.69 +1.1 165,690 + ABZR87_RS16995 0.69 +0.2 165,690 + ABZR87_RS16995 0.69 -0.0 165,691 - ABZR87_RS16995 0.69 -0.2 165,691 - ABZR87_RS16995 0.69 +1.1 165,853 - +2.0 165,853 - -1.5 165,883 - +0.1 165,949 + -0.2 165,949 + -0.3 165,950 - +0.8 165,954 - -0.2 165,954 - -0.2 165,983 + ABZR87_RS17000 0.13 -0.2 165,983 + ABZR87_RS17000 0.13 +0.1 165,983 + ABZR87_RS17000 0.13 +1.8 165,984 - ABZR87_RS17000 0.13 -0.2 166,094 + ABZR87_RS17000 0.31 -0.5 166,094 + ABZR87_RS17000 0.31 -1.1 166,094 + ABZR87_RS17000 0.31 -0.5 166,159 - ABZR87_RS17000 0.42 -0.0 166,199 - ABZR87_RS17000 0.48 -1.5
Or see this region's nucleotide sequence