Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS14890

Experiment: rhizosphere sample 9; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS14875 and ABZR87_RS14880 are separated by 6 nucleotidesABZR87_RS14880 and ABZR87_RS14885 are separated by 163 nucleotidesABZR87_RS14885 and ABZR87_RS14890 are separated by 180 nucleotidesABZR87_RS14890 and ABZR87_RS14895 are separated by 61 nucleotidesABZR87_RS14895 and ABZR87_RS14900 are separated by 79 nucleotides ABZR87_RS14875: ABZR87_RS14875 - NADH-quinone oxidoreductase subunit B family protein, at 3,139,861 to 3,140,343 _RS14875 ABZR87_RS14880: ABZR87_RS14880 - NADH-quinone oxidoreductase subunit A, at 3,140,350 to 3,140,709 _RS14880 ABZR87_RS14885: ABZR87_RS14885 - tRNA-Leu, at 3,140,873 to 3,140,957 _RS14885 ABZR87_RS14890: ABZR87_RS14890 - preprotein translocase subunit SecG, at 3,141,138 to 3,141,500 _RS14890 ABZR87_RS14895: ABZR87_RS14895 - triose-phosphate isomerase, at 3,141,562 to 3,142,308 _RS14895 ABZR87_RS14900: ABZR87_RS14900 - NAD(P)H-quinone oxidoreductase, at 3,142,388 to 3,143,392 _RS14900 Position (kb) 3141 3142Strain fitness (log2 ratio) -1 0 1at 3140.974 kb on - strandat 3140.996 kb on - strandat 3140.996 kb on - strandat 3141.129 kb on + strandat 3141.130 kb on - strandat 3141.219 kb on - strand, within ABZR87_RS14890at 3141.519 kb on - strandat 3141.519 kb on - strandat 3141.564 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 9; outgrowth in LB
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3,140,974 - -0.6
3,140,996 - -0.2
3,140,996 - -0.6
3,141,129 + +1.0
3,141,130 - +0.7
3,141,219 - ABZR87_RS14890 0.22 -1.1
3,141,519 - +1.3
3,141,519 - -0.0
3,141,564 - -1.3

Or see this region's nucleotide sequence