Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS14310

Experiment: rhizosphere sample 9; outgrowth in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS14305 and ABZR87_RS14310 overlap by 4 nucleotidesABZR87_RS14310 and ABZR87_RS14315 are separated by 73 nucleotides ABZR87_RS14305: ABZR87_RS14305 - acyl-CoA thioester hydrolase/BAAT C-terminal domain-containing protein, at 3,020,475 to 3,022,355 _RS14305 ABZR87_RS14310: ABZR87_RS14310 - peroxidase-related enzyme, at 3,022,352 to 3,022,942 _RS14310 ABZR87_RS14315: ABZR87_RS14315 - xanthine dehydrogenase family protein molybdopterin-binding subunit, at 3,023,016 to 3,025,313 _RS14315 Position (kb) 3022 3023Strain fitness (log2 ratio) -2 -1 0 1 2at 3021.563 kb on - strand, within ABZR87_RS14305at 3021.563 kb on - strand, within ABZR87_RS14305at 3021.563 kb on - strand, within ABZR87_RS14305at 3021.628 kb on - strand, within ABZR87_RS14305at 3021.927 kb on + strand, within ABZR87_RS14305at 3021.928 kb on - strand, within ABZR87_RS14305at 3021.993 kb on + strand, within ABZR87_RS14305at 3022.035 kb on + strand, within ABZR87_RS14305at 3022.036 kb on - strand, within ABZR87_RS14305at 3022.036 kb on - strand, within ABZR87_RS14305at 3022.055 kb on + strand, within ABZR87_RS14305at 3022.496 kb on + strand, within ABZR87_RS14310at 3022.497 kb on - strand, within ABZR87_RS14310at 3022.565 kb on + strand, within ABZR87_RS14310at 3022.565 kb on + strand, within ABZR87_RS14310at 3022.565 kb on + strand, within ABZR87_RS14310at 3022.565 kb on + strand, within ABZR87_RS14310at 3022.566 kb on - strand, within ABZR87_RS14310at 3022.566 kb on - strand, within ABZR87_RS14310at 3022.566 kb on - strand, within ABZR87_RS14310at 3022.797 kb on + strand, within ABZR87_RS14310at 3022.863 kb on + strand, within ABZR87_RS14310at 3022.863 kb on + strand, within ABZR87_RS14310at 3023.129 kb on + strandat 3023.611 kb on + strand, within ABZR87_RS14315at 3023.612 kb on - strand, within ABZR87_RS14315at 3023.726 kb on - strand, within ABZR87_RS14315at 3023.869 kb on + strand, within ABZR87_RS14315at 3023.870 kb on - strand, within ABZR87_RS14315at 3023.870 kb on - strand, within ABZR87_RS14315

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 9; outgrowth in LB
remove
3,021,563 - ABZR87_RS14305 0.58 +0.1
3,021,563 - ABZR87_RS14305 0.58 -1.2
3,021,563 - ABZR87_RS14305 0.58 -0.1
3,021,628 - ABZR87_RS14305 0.61 -1.3
3,021,927 + ABZR87_RS14305 0.77 -1.0
3,021,928 - ABZR87_RS14305 0.77 -0.7
3,021,993 + ABZR87_RS14305 0.81 -1.3
3,022,035 + ABZR87_RS14305 0.83 +1.1
3,022,036 - ABZR87_RS14305 0.83 +0.8
3,022,036 - ABZR87_RS14305 0.83 -0.2
3,022,055 + ABZR87_RS14305 0.84 -1.8
3,022,496 + ABZR87_RS14310 0.24 +0.1
3,022,497 - ABZR87_RS14310 0.25 +0.4
3,022,565 + ABZR87_RS14310 0.36 -0.4
3,022,565 + ABZR87_RS14310 0.36 -0.5
3,022,565 + ABZR87_RS14310 0.36 -0.5
3,022,565 + ABZR87_RS14310 0.36 +0.1
3,022,566 - ABZR87_RS14310 0.36 +1.1
3,022,566 - ABZR87_RS14310 0.36 +0.9
3,022,566 - ABZR87_RS14310 0.36 +1.9
3,022,797 + ABZR87_RS14310 0.75 +0.0
3,022,863 + ABZR87_RS14310 0.86 +1.1
3,022,863 + ABZR87_RS14310 0.86 -2.2
3,023,129 + -1.7
3,023,611 + ABZR87_RS14315 0.26 -0.1
3,023,612 - ABZR87_RS14315 0.26 +0.4
3,023,726 - ABZR87_RS14315 0.31 -0.2
3,023,869 + ABZR87_RS14315 0.37 -0.2
3,023,870 - ABZR87_RS14315 0.37 +1.0
3,023,870 - ABZR87_RS14315 0.37 +0.9

Or see this region's nucleotide sequence