Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS13045

Experiment: rhizosphere sample 9; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS13035 and ABZR87_RS13040 are separated by 29 nucleotidesABZR87_RS13040 and ABZR87_RS13045 are separated by 54 nucleotidesABZR87_RS13045 and ABZR87_RS13050 overlap by 4 nucleotidesABZR87_RS13050 and ABZR87_RS13055 overlap by 4 nucleotides ABZR87_RS13035: ABZR87_RS13035 - phage tail sheath protein, at 2,767,719 to 2,768,894 _RS13035 ABZR87_RS13040: ABZR87_RS13040 - phage major tail tube protein, at 2,768,924 to 2,769,433 _RS13040 ABZR87_RS13045: ABZR87_RS13045 - phage tail assembly protein, at 2,769,488 to 2,769,814 _RS13045 ABZR87_RS13050: ABZR87_RS13050 - GpE family phage tail protein, at 2,769,811 to 2,769,912 _RS13050 ABZR87_RS13055: ABZR87_RS13055 - hypothetical protein, at 2,769,909 to 2,772,548 _RS13055 Position (kb) 2769 2770Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2768.571 kb on + strand, within ABZR87_RS13035at 2768.669 kb on - strand, within ABZR87_RS13035at 2768.713 kb on - strand, within ABZR87_RS13035at 2768.799 kb on + strandat 2768.857 kb on - strandat 2768.912 kb on + strandat 2769.035 kb on + strand, within ABZR87_RS13040at 2769.107 kb on + strand, within ABZR87_RS13040at 2769.107 kb on + strand, within ABZR87_RS13040at 2769.107 kb on + strand, within ABZR87_RS13040at 2769.107 kb on + strand, within ABZR87_RS13040at 2769.107 kb on + strand, within ABZR87_RS13040at 2769.108 kb on - strand, within ABZR87_RS13040at 2769.108 kb on - strand, within ABZR87_RS13040at 2769.108 kb on - strand, within ABZR87_RS13040at 2769.108 kb on - strand, within ABZR87_RS13040at 2769.108 kb on - strand, within ABZR87_RS13040at 2769.189 kb on - strand, within ABZR87_RS13040at 2769.318 kb on - strand, within ABZR87_RS13040at 2769.320 kb on + strand, within ABZR87_RS13040at 2769.320 kb on + strand, within ABZR87_RS13040at 2769.321 kb on - strand, within ABZR87_RS13040at 2769.321 kb on - strand, within ABZR87_RS13040at 2769.442 kb on + strandat 2769.588 kb on + strand, within ABZR87_RS13045at 2769.589 kb on - strand, within ABZR87_RS13045at 2769.589 kb on - strand, within ABZR87_RS13045at 2769.589 kb on - strand, within ABZR87_RS13045at 2769.640 kb on + strand, within ABZR87_RS13045at 2769.640 kb on + strand, within ABZR87_RS13045at 2769.640 kb on + strand, within ABZR87_RS13045at 2769.641 kb on - strand, within ABZR87_RS13045at 2769.841 kb on + strand, within ABZR87_RS13050at 2770.339 kb on + strand, within ABZR87_RS13055at 2770.340 kb on - strand, within ABZR87_RS13055at 2770.503 kb on - strand, within ABZR87_RS13055at 2770.647 kb on + strand, within ABZR87_RS13055at 2770.647 kb on + strand, within ABZR87_RS13055

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 9; outgrowth in LB
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2,768,571 + ABZR87_RS13035 0.72 +1.0
2,768,669 - ABZR87_RS13035 0.81 +0.6
2,768,713 - ABZR87_RS13035 0.85 -1.2
2,768,799 + +2.1
2,768,857 - +0.2
2,768,912 + -0.3
2,769,035 + ABZR87_RS13040 0.22 +0.1
2,769,107 + ABZR87_RS13040 0.36 -1.4
2,769,107 + ABZR87_RS13040 0.36 -0.7
2,769,107 + ABZR87_RS13040 0.36 -0.5
2,769,107 + ABZR87_RS13040 0.36 +0.1
2,769,107 + ABZR87_RS13040 0.36 +1.0
2,769,108 - ABZR87_RS13040 0.36 +0.7
2,769,108 - ABZR87_RS13040 0.36 +0.5
2,769,108 - ABZR87_RS13040 0.36 +1.0
2,769,108 - ABZR87_RS13040 0.36 -1.2
2,769,108 - ABZR87_RS13040 0.36 +4.1
2,769,189 - ABZR87_RS13040 0.52 -1.3
2,769,318 - ABZR87_RS13040 0.77 +1.1
2,769,320 + ABZR87_RS13040 0.78 -2.0
2,769,320 + ABZR87_RS13040 0.78 +0.6
2,769,321 - ABZR87_RS13040 0.78 -1.1
2,769,321 - ABZR87_RS13040 0.78 -0.2
2,769,442 + +0.8
2,769,588 + ABZR87_RS13045 0.31 +0.3
2,769,589 - ABZR87_RS13045 0.31 -1.3
2,769,589 - ABZR87_RS13045 0.31 -0.4
2,769,589 - ABZR87_RS13045 0.31 -1.1
2,769,640 + ABZR87_RS13045 0.46 -0.1
2,769,640 + ABZR87_RS13045 0.46 -1.5
2,769,640 + ABZR87_RS13045 0.46 +0.1
2,769,641 - ABZR87_RS13045 0.47 -0.2
2,769,841 + ABZR87_RS13050 0.29 -1.0
2,770,339 + ABZR87_RS13055 0.16 +0.2
2,770,340 - ABZR87_RS13055 0.16 +0.4
2,770,503 - ABZR87_RS13055 0.23 +1.0
2,770,647 + ABZR87_RS13055 0.28 -0.7
2,770,647 + ABZR87_RS13055 0.28 +1.9

Or see this region's nucleotide sequence