Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS09495

Experiment: rhizosphere sample 9; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS09490 and ABZR87_RS09495 are separated by 64 nucleotidesABZR87_RS09495 and ABZR87_RS09500 are separated by 38 nucleotidesABZR87_RS09500 and ABZR87_RS09505 are separated by 18 nucleotides ABZR87_RS09490: ABZR87_RS09490 - lipopolysaccharide assembly protein LapB, at 2,015,300 to 2,016,574 _RS09490 ABZR87_RS09495: ABZR87_RS09495 - UDP-glucose/GDP-mannose dehydrogenase family protein, at 2,016,639 to 2,018,003 _RS09495 ABZR87_RS09500: ABZR87_RS09500 - D-glycero-beta-D-manno-heptose-7-phosphate kinase, at 2,018,042 to 2,018,974 _RS09500 ABZR87_RS09505: ABZR87_RS09505 - ADP-glyceromanno-heptose 6-epimerase, at 2,018,993 to 2,019,988 _RS09505 Position (kb) 2016 2017 2018 2019Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 2016.521 kb on + strandat 2016.521 kb on + strandat 2016.521 kb on + strandat 2016.521 kb on + strandat 2016.521 kb on + strandat 2016.521 kb on + strandat 2016.521 kb on + strandat 2016.521 kb on + strandat 2016.521 kb on + strandat 2016.572 kb on + strandat 2016.572 kb on + strandat 2016.572 kb on + strandat 2016.638 kb on + strandat 2018.001 kb on + strandat 2018.002 kb on - strandat 2018.002 kb on - strandat 2018.498 kb on + strand, within ABZR87_RS09500at 2018.592 kb on - strand, within ABZR87_RS09500at 2018.601 kb on - strand, within ABZR87_RS09500at 2018.601 kb on - strand, within ABZR87_RS09500at 2018.762 kb on + strand, within ABZR87_RS09500at 2018.762 kb on + strand, within ABZR87_RS09500at 2018.763 kb on - strand, within ABZR87_RS09500

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 9; outgrowth in LB
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2,016,521 + +0.3
2,016,521 + -0.8
2,016,521 + +0.6
2,016,521 + -0.8
2,016,521 + -0.4
2,016,521 + -1.3
2,016,521 + -0.5
2,016,521 + -0.2
2,016,521 + +0.6
2,016,572 + -0.2
2,016,572 + -1.0
2,016,572 + -0.6
2,016,638 + -0.1
2,018,001 + -0.2
2,018,002 - -1.3
2,018,002 - +0.0
2,018,498 + ABZR87_RS09500 0.49 +3.4
2,018,592 - ABZR87_RS09500 0.59 +3.8
2,018,601 - ABZR87_RS09500 0.60 +4.6
2,018,601 - ABZR87_RS09500 0.60 +4.2
2,018,762 + ABZR87_RS09500 0.77 +4.2
2,018,762 + ABZR87_RS09500 0.77 +2.8
2,018,763 - ABZR87_RS09500 0.77 +4.9

Or see this region's nucleotide sequence