Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS08895

Experiment: rhizosphere sample 9; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS08885 and ABZR87_RS08890 are separated by 43 nucleotidesABZR87_RS08890 and ABZR87_RS08895 overlap by 13 nucleotidesABZR87_RS08895 and ABZR87_RS08900 overlap by 1 nucleotides ABZR87_RS08885: ABZR87_RS08885 - bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD, at 1,887,361 to 1,888,473 _RS08885 ABZR87_RS08890: ABZR87_RS08890 - GspH/FimT family pseudopilin, at 1,888,517 to 1,889,044 _RS08890 ABZR87_RS08895: ABZR87_RS08895 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 1,889,032 to 1,889,427 _RS08895 ABZR87_RS08900: ABZR87_RS08900 - PilC/PilY family type IV pilus protein, at 1,889,427 to 1,891,229 _RS08900 Position (kb) 1889 1890Strain fitness (log2 ratio) -2 -1 0 1 2at 1888.480 kb on - strandat 1888.515 kb on - strandat 1888.515 kb on - strandat 1888.515 kb on - strandat 1888.515 kb on - strandat 1888.515 kb on - strandat 1888.515 kb on - strandat 1888.515 kb on - strandat 1888.519 kb on - strandat 1888.578 kb on - strand, within ABZR87_RS08890at 1888.578 kb on - strand, within ABZR87_RS08890at 1888.578 kb on - strand, within ABZR87_RS08890at 1888.578 kb on - strand, within ABZR87_RS08890at 1888.583 kb on - strand, within ABZR87_RS08890at 1888.583 kb on - strand, within ABZR87_RS08890at 1888.583 kb on - strand, within ABZR87_RS08890at 1888.583 kb on - strand, within ABZR87_RS08890at 1888.583 kb on - strand, within ABZR87_RS08890at 1888.583 kb on - strand, within ABZR87_RS08890at 1888.583 kb on - strand, within ABZR87_RS08890at 1888.583 kb on - strand, within ABZR87_RS08890at 1888.650 kb on + strand, within ABZR87_RS08890at 1888.650 kb on + strand, within ABZR87_RS08890at 1888.680 kb on + strand, within ABZR87_RS08890at 1888.694 kb on - strand, within ABZR87_RS08890at 1888.694 kb on - strand, within ABZR87_RS08890at 1888.722 kb on - strand, within ABZR87_RS08890at 1888.722 kb on - strand, within ABZR87_RS08890at 1888.722 kb on - strand, within ABZR87_RS08890at 1888.722 kb on - strand, within ABZR87_RS08890at 1888.722 kb on - strand, within ABZR87_RS08890at 1888.722 kb on - strand, within ABZR87_RS08890at 1888.956 kb on - strand, within ABZR87_RS08890at 1888.956 kb on - strand, within ABZR87_RS08890at 1888.961 kb on + strand, within ABZR87_RS08890at 1888.961 kb on + strand, within ABZR87_RS08890at 1888.962 kb on - strand, within ABZR87_RS08890at 1889.034 kb on - strandat 1889.193 kb on + strand, within ABZR87_RS08895at 1889.193 kb on + strand, within ABZR87_RS08895at 1889.193 kb on + strand, within ABZR87_RS08895at 1889.198 kb on + strand, within ABZR87_RS08895at 1889.198 kb on + strand, within ABZR87_RS08895at 1889.198 kb on + strand, within ABZR87_RS08895at 1889.198 kb on + strand, within ABZR87_RS08895at 1889.199 kb on - strand, within ABZR87_RS08895at 1889.199 kb on - strand, within ABZR87_RS08895at 1889.210 kb on + strand, within ABZR87_RS08895at 1889.210 kb on + strand, within ABZR87_RS08895at 1889.210 kb on + strand, within ABZR87_RS08895at 1889.210 kb on + strand, within ABZR87_RS08895at 1889.210 kb on + strand, within ABZR87_RS08895at 1889.210 kb on + strand, within ABZR87_RS08895at 1889.211 kb on - strand, within ABZR87_RS08895at 1889.211 kb on - strand, within ABZR87_RS08895at 1889.211 kb on - strand, within ABZR87_RS08895at 1889.211 kb on - strand, within ABZR87_RS08895at 1889.211 kb on - strand, within ABZR87_RS08895at 1889.211 kb on - strand, within ABZR87_RS08895at 1889.211 kb on - strand, within ABZR87_RS08895at 1889.211 kb on - strand, within ABZR87_RS08895at 1889.211 kb on - strand, within ABZR87_RS08895at 1889.211 kb on - strand, within ABZR87_RS08895at 1889.212 kb on + strand, within ABZR87_RS08895at 1889.212 kb on + strand, within ABZR87_RS08895at 1889.212 kb on + strand, within ABZR87_RS08895at 1889.212 kb on + strand, within ABZR87_RS08895at 1889.212 kb on + strand, within ABZR87_RS08895at 1889.212 kb on + strand, within ABZR87_RS08895at 1889.212 kb on + strand, within ABZR87_RS08895at 1889.212 kb on + strand, within ABZR87_RS08895at 1889.213 kb on - strand, within ABZR87_RS08895at 1889.213 kb on - strand, within ABZR87_RS08895at 1889.213 kb on - strand, within ABZR87_RS08895at 1889.213 kb on - strand, within ABZR87_RS08895at 1889.213 kb on - strand, within ABZR87_RS08895at 1889.213 kb on - strand, within ABZR87_RS08895at 1889.240 kb on + strand, within ABZR87_RS08895at 1889.241 kb on - strand, within ABZR87_RS08895at 1889.241 kb on - strand, within ABZR87_RS08895at 1889.241 kb on - strand, within ABZR87_RS08895at 1889.263 kb on + strand, within ABZR87_RS08895at 1889.264 kb on - strand, within ABZR87_RS08895at 1889.264 kb on - strand, within ABZR87_RS08895at 1889.275 kb on + strand, within ABZR87_RS08895at 1889.276 kb on - strand, within ABZR87_RS08895at 1889.278 kb on + strand, within ABZR87_RS08895at 1889.278 kb on + strand, within ABZR87_RS08895at 1889.278 kb on + strand, within ABZR87_RS08895at 1889.278 kb on + strand, within ABZR87_RS08895at 1889.278 kb on + strand, within ABZR87_RS08895at 1889.279 kb on - strand, within ABZR87_RS08895at 1889.330 kb on + strand, within ABZR87_RS08895at 1889.331 kb on - strand, within ABZR87_RS08895at 1889.331 kb on - strand, within ABZR87_RS08895at 1889.380 kb on + strand, within ABZR87_RS08895at 1889.381 kb on - strand, within ABZR87_RS08895at 1889.428 kb on + strandat 1889.429 kb on - strandat 1889.485 kb on + strandat 1889.485 kb on + strandat 1889.485 kb on + strandat 1889.486 kb on - strandat 1889.486 kb on - strandat 1889.540 kb on + strandat 1889.540 kb on + strandat 1889.541 kb on - strandat 1889.541 kb on - strandat 1889.622 kb on + strand, within ABZR87_RS08900at 1889.622 kb on + strand, within ABZR87_RS08900at 1889.622 kb on + strand, within ABZR87_RS08900at 1889.623 kb on - strand, within ABZR87_RS08900at 1889.623 kb on - strand, within ABZR87_RS08900at 1889.623 kb on - strand, within ABZR87_RS08900at 1889.673 kb on + strand, within ABZR87_RS08900at 1889.674 kb on - strand, within ABZR87_RS08900at 1889.674 kb on - strand, within ABZR87_RS08900at 1889.674 kb on - strand, within ABZR87_RS08900at 1889.681 kb on - strand, within ABZR87_RS08900at 1889.681 kb on - strand, within ABZR87_RS08900at 1889.681 kb on - strand, within ABZR87_RS08900at 1889.681 kb on - strand, within ABZR87_RS08900at 1889.702 kb on + strand, within ABZR87_RS08900at 1889.702 kb on + strand, within ABZR87_RS08900at 1889.703 kb on - strand, within ABZR87_RS08900at 1889.703 kb on - strand, within ABZR87_RS08900at 1889.726 kb on + strand, within ABZR87_RS08900at 1889.905 kb on + strand, within ABZR87_RS08900at 1889.905 kb on + strand, within ABZR87_RS08900at 1889.905 kb on + strand, within ABZR87_RS08900at 1889.905 kb on + strand, within ABZR87_RS08900at 1889.905 kb on + strand, within ABZR87_RS08900at 1889.906 kb on - strand, within ABZR87_RS08900at 1889.906 kb on - strand, within ABZR87_RS08900at 1890.133 kb on + strand, within ABZR87_RS08900at 1890.223 kb on + strand, within ABZR87_RS08900at 1890.223 kb on + strand, within ABZR87_RS08900at 1890.223 kb on + strand, within ABZR87_RS08900at 1890.223 kb on + strand, within ABZR87_RS08900at 1890.223 kb on + strand, within ABZR87_RS08900at 1890.224 kb on - strand, within ABZR87_RS08900at 1890.224 kb on - strand, within ABZR87_RS08900at 1890.224 kb on - strand, within ABZR87_RS08900at 1890.224 kb on - strand, within ABZR87_RS08900

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 9; outgrowth in LB
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1,888,480 - +0.8
1,888,515 - +0.4
1,888,515 - +0.3
1,888,515 - -1.1
1,888,515 - -1.3
1,888,515 - +2.0
1,888,515 - -0.3
1,888,515 - -1.4
1,888,519 - -0.2
1,888,578 - ABZR87_RS08890 0.12 -0.2
1,888,578 - ABZR87_RS08890 0.12 -1.4
1,888,578 - ABZR87_RS08890 0.12 +0.2
1,888,578 - ABZR87_RS08890 0.12 -1.2
1,888,583 - ABZR87_RS08890 0.12 -0.5
1,888,583 - ABZR87_RS08890 0.12 -0.2
1,888,583 - ABZR87_RS08890 0.12 +0.4
1,888,583 - ABZR87_RS08890 0.12 +0.9
1,888,583 - ABZR87_RS08890 0.12 +1.7
1,888,583 - ABZR87_RS08890 0.12 -0.0
1,888,583 - ABZR87_RS08890 0.12 -1.2
1,888,583 - ABZR87_RS08890 0.12 -1.4
1,888,650 + ABZR87_RS08890 0.25 -1.0
1,888,650 + ABZR87_RS08890 0.25 -2.0
1,888,680 + ABZR87_RS08890 0.31 +0.2
1,888,694 - ABZR87_RS08890 0.34 -1.7
1,888,694 - ABZR87_RS08890 0.34 -0.4
1,888,722 - ABZR87_RS08890 0.39 -0.8
1,888,722 - ABZR87_RS08890 0.39 -0.1
1,888,722 - ABZR87_RS08890 0.39 +0.7
1,888,722 - ABZR87_RS08890 0.39 +0.9
1,888,722 - ABZR87_RS08890 0.39 -1.2
1,888,722 - ABZR87_RS08890 0.39 -0.5
1,888,956 - ABZR87_RS08890 0.83 -0.5
1,888,956 - ABZR87_RS08890 0.83 +0.1
1,888,961 + ABZR87_RS08890 0.84 -1.0
1,888,961 + ABZR87_RS08890 0.84 -1.0
1,888,962 - ABZR87_RS08890 0.84 +0.4
1,889,034 - +1.2
1,889,193 + ABZR87_RS08895 0.41 +0.5
1,889,193 + ABZR87_RS08895 0.41 +1.0
1,889,193 + ABZR87_RS08895 0.41 -0.2
1,889,198 + ABZR87_RS08895 0.42 -0.2
1,889,198 + ABZR87_RS08895 0.42 +0.4
1,889,198 + ABZR87_RS08895 0.42 -1.1
1,889,198 + ABZR87_RS08895 0.42 -0.0
1,889,199 - ABZR87_RS08895 0.42 +0.4
1,889,199 - ABZR87_RS08895 0.42 +0.3
1,889,210 + ABZR87_RS08895 0.45 -0.9
1,889,210 + ABZR87_RS08895 0.45 +0.6
1,889,210 + ABZR87_RS08895 0.45 +0.4
1,889,210 + ABZR87_RS08895 0.45 +0.8
1,889,210 + ABZR87_RS08895 0.45 -2.4
1,889,210 + ABZR87_RS08895 0.45 +0.1
1,889,211 - ABZR87_RS08895 0.45 -1.7
1,889,211 - ABZR87_RS08895 0.45 -0.6
1,889,211 - ABZR87_RS08895 0.45 -1.2
1,889,211 - ABZR87_RS08895 0.45 -2.3
1,889,211 - ABZR87_RS08895 0.45 -0.3
1,889,211 - ABZR87_RS08895 0.45 -0.6
1,889,211 - ABZR87_RS08895 0.45 -1.0
1,889,211 - ABZR87_RS08895 0.45 -0.1
1,889,211 - ABZR87_RS08895 0.45 -1.8
1,889,211 - ABZR87_RS08895 0.45 +0.2
1,889,212 + ABZR87_RS08895 0.45 +0.7
1,889,212 + ABZR87_RS08895 0.45 +1.1
1,889,212 + ABZR87_RS08895 0.45 +0.0
1,889,212 + ABZR87_RS08895 0.45 -1.1
1,889,212 + ABZR87_RS08895 0.45 -0.3
1,889,212 + ABZR87_RS08895 0.45 -1.2
1,889,212 + ABZR87_RS08895 0.45 -0.7
1,889,212 + ABZR87_RS08895 0.45 -0.1
1,889,213 - ABZR87_RS08895 0.46 -0.1
1,889,213 - ABZR87_RS08895 0.46 -0.8
1,889,213 - ABZR87_RS08895 0.46 +0.3
1,889,213 - ABZR87_RS08895 0.46 -0.6
1,889,213 - ABZR87_RS08895 0.46 -0.1
1,889,213 - ABZR87_RS08895 0.46 -1.5
1,889,240 + ABZR87_RS08895 0.53 +0.4
1,889,241 - ABZR87_RS08895 0.53 +0.3
1,889,241 - ABZR87_RS08895 0.53 -1.0
1,889,241 - ABZR87_RS08895 0.53 -0.8
1,889,263 + ABZR87_RS08895 0.58 +1.8
1,889,264 - ABZR87_RS08895 0.59 +0.7
1,889,264 - ABZR87_RS08895 0.59 -0.2
1,889,275 + ABZR87_RS08895 0.61 -0.4
1,889,276 - ABZR87_RS08895 0.62 +0.0
1,889,278 + ABZR87_RS08895 0.62 -0.9
1,889,278 + ABZR87_RS08895 0.62 -0.1
1,889,278 + ABZR87_RS08895 0.62 +0.5
1,889,278 + ABZR87_RS08895 0.62 -0.0
1,889,278 + ABZR87_RS08895 0.62 -0.7
1,889,279 - ABZR87_RS08895 0.62 -2.2
1,889,330 + ABZR87_RS08895 0.75 -0.4
1,889,331 - ABZR87_RS08895 0.76 +0.1
1,889,331 - ABZR87_RS08895 0.76 -1.4
1,889,380 + ABZR87_RS08895 0.88 -2.1
1,889,381 - ABZR87_RS08895 0.88 -1.5
1,889,428 + -0.5
1,889,429 - -0.0
1,889,485 + -0.9
1,889,485 + -0.1
1,889,485 + -2.4
1,889,486 - -2.0
1,889,486 - -1.4
1,889,540 + -1.1
1,889,540 + -0.4
1,889,541 - +0.5
1,889,541 - +0.3
1,889,622 + ABZR87_RS08900 0.11 -0.6
1,889,622 + ABZR87_RS08900 0.11 -0.3
1,889,622 + ABZR87_RS08900 0.11 -0.6
1,889,623 - ABZR87_RS08900 0.11 +0.2
1,889,623 - ABZR87_RS08900 0.11 +0.3
1,889,623 - ABZR87_RS08900 0.11 +1.0
1,889,673 + ABZR87_RS08900 0.14 -0.9
1,889,674 - ABZR87_RS08900 0.14 +1.3
1,889,674 - ABZR87_RS08900 0.14 -0.5
1,889,674 - ABZR87_RS08900 0.14 +0.9
1,889,681 - ABZR87_RS08900 0.14 -0.6
1,889,681 - ABZR87_RS08900 0.14 -1.4
1,889,681 - ABZR87_RS08900 0.14 -1.4
1,889,681 - ABZR87_RS08900 0.14 +0.5
1,889,702 + ABZR87_RS08900 0.15 -0.1
1,889,702 + ABZR87_RS08900 0.15 +0.4
1,889,703 - ABZR87_RS08900 0.15 +0.7
1,889,703 - ABZR87_RS08900 0.15 -2.5
1,889,726 + ABZR87_RS08900 0.17 -0.1
1,889,905 + ABZR87_RS08900 0.27 -0.3
1,889,905 + ABZR87_RS08900 0.27 +0.1
1,889,905 + ABZR87_RS08900 0.27 -1.4
1,889,905 + ABZR87_RS08900 0.27 -1.9
1,889,905 + ABZR87_RS08900 0.27 -0.4
1,889,906 - ABZR87_RS08900 0.27 -0.7
1,889,906 - ABZR87_RS08900 0.27 -0.1
1,890,133 + ABZR87_RS08900 0.39 +0.2
1,890,223 + ABZR87_RS08900 0.44 -1.1
1,890,223 + ABZR87_RS08900 0.44 +1.2
1,890,223 + ABZR87_RS08900 0.44 -0.5
1,890,223 + ABZR87_RS08900 0.44 -0.4
1,890,223 + ABZR87_RS08900 0.44 +0.2
1,890,224 - ABZR87_RS08900 0.44 -1.3
1,890,224 - ABZR87_RS08900 0.44 +0.4
1,890,224 - ABZR87_RS08900 0.44 -1.2
1,890,224 - ABZR87_RS08900 0.44 -1.3

Or see this region's nucleotide sequence