Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS08230

Experiment: rhizosphere sample 9; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS08220 and ABZR87_RS08225 are separated by 54 nucleotidesABZR87_RS08225 and ABZR87_RS08230 are separated by 138 nucleotidesABZR87_RS08230 and ABZR87_RS08235 overlap by 2 nucleotidesABZR87_RS08235 and ABZR87_RS08240 overlap by 4 nucleotidesABZR87_RS08240 and ABZR87_RS08245 are separated by 16 nucleotides ABZR87_RS08220: ABZR87_RS08220 - TonB-dependent receptor, at 1,747,202 to 1,749,385 _RS08220 ABZR87_RS08225: ABZR87_RS08225 - hypothetical protein, at 1,749,440 to 1,750,072 _RS08225 ABZR87_RS08230: ABZR87_RS08230 - hypothetical protein, at 1,750,211 to 1,750,798 _RS08230 ABZR87_RS08235: ABZR87_RS08235 - hypothetical protein, at 1,750,797 to 1,751,255 _RS08235 ABZR87_RS08240: ABZR87_RS08240 - hypothetical protein, at 1,751,252 to 1,751,452 _RS08240 ABZR87_RS08245: ABZR87_RS08245 - hypothetical protein, at 1,751,469 to 1,751,810 _RS08245 Position (kb) 1750 1751Strain fitness (log2 ratio) -2 -1 0 1 2at 1749.294 kb on - strandat 1749.294 kb on - strandat 1749.294 kb on - strandat 1749.294 kb on - strandat 1749.353 kb on - strandat 1749.353 kb on - strandat 1749.384 kb on - strandat 1749.384 kb on - strandat 1749.384 kb on - strandat 1749.384 kb on - strandat 1749.402 kb on + strandat 1749.402 kb on + strandat 1749.402 kb on + strandat 1749.402 kb on + strandat 1749.402 kb on + strandat 1749.402 kb on + strandat 1749.402 kb on + strandat 1749.402 kb on + strandat 1749.402 kb on + strandat 1749.402 kb on + strandat 1749.402 kb on + strandat 1749.402 kb on + strandat 1749.402 kb on + strandat 1749.402 kb on + strandat 1749.402 kb on + strandat 1749.402 kb on + strandat 1749.402 kb on + strandat 1749.403 kb on - strandat 1749.403 kb on - strandat 1749.403 kb on - strandat 1749.403 kb on - strandat 1749.403 kb on - strandat 1749.403 kb on - strandat 1749.403 kb on - strandat 1749.403 kb on - strandat 1749.403 kb on - strandat 1749.406 kb on + strandat 1749.406 kb on + strandat 1749.406 kb on + strandat 1749.406 kb on + strandat 1749.406 kb on + strandat 1749.406 kb on + strandat 1749.406 kb on + strandat 1749.407 kb on - strandat 1749.407 kb on - strandat 1749.407 kb on - strandat 1749.407 kb on - strandat 1749.430 kb on + strandat 1749.430 kb on + strandat 1749.431 kb on - strandat 1749.431 kb on - strandat 1749.431 kb on - strandat 1749.624 kb on + strand, within ABZR87_RS08225at 1749.625 kb on - strand, within ABZR87_RS08225at 1749.822 kb on + strand, within ABZR87_RS08225at 1749.822 kb on + strand, within ABZR87_RS08225at 1749.822 kb on + strand, within ABZR87_RS08225at 1749.822 kb on + strand, within ABZR87_RS08225at 1749.823 kb on - strand, within ABZR87_RS08225at 1749.823 kb on - strand, within ABZR87_RS08225at 1749.823 kb on - strand, within ABZR87_RS08225at 1749.823 kb on - strand, within ABZR87_RS08225at 1749.823 kb on - strand, within ABZR87_RS08225at 1750.061 kb on + strandat 1750.062 kb on - strandat 1750.062 kb on - strandat 1750.248 kb on + strandat 1750.248 kb on + strandat 1750.248 kb on + strandat 1750.248 kb on + strandat 1750.248 kb on - strandat 1750.249 kb on - strandat 1750.249 kb on - strandat 1750.249 kb on - strandat 1750.249 kb on - strandat 1750.472 kb on + strand, within ABZR87_RS08230at 1750.472 kb on + strand, within ABZR87_RS08230at 1750.505 kb on + strand, within ABZR87_RS08230at 1750.505 kb on + strand, within ABZR87_RS08230at 1750.506 kb on - strand, within ABZR87_RS08230at 1750.779 kb on + strandat 1750.859 kb on + strand, within ABZR87_RS08235at 1751.654 kb on + strand, within ABZR87_RS08245at 1751.654 kb on + strand, within ABZR87_RS08245at 1751.655 kb on - strand, within ABZR87_RS08245at 1751.655 kb on - strand, within ABZR87_RS08245at 1751.655 kb on - strand, within ABZR87_RS08245at 1751.655 kb on - strand, within ABZR87_RS08245at 1751.656 kb on + strand, within ABZR87_RS08245at 1751.702 kb on + strand, within ABZR87_RS08245at 1751.702 kb on + strand, within ABZR87_RS08245at 1751.702 kb on + strand, within ABZR87_RS08245at 1751.702 kb on + strand, within ABZR87_RS08245at 1751.703 kb on - strand, within ABZR87_RS08245

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 9; outgrowth in LB
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1,749,294 - -0.5
1,749,294 - -1.2
1,749,294 - -0.1
1,749,294 - -1.0
1,749,353 - +0.3
1,749,353 - -1.8
1,749,384 - +0.0
1,749,384 - +0.2
1,749,384 - -1.2
1,749,384 - -1.1
1,749,402 + -0.3
1,749,402 + -0.6
1,749,402 + +0.1
1,749,402 + +0.7
1,749,402 + +0.3
1,749,402 + -1.5
1,749,402 + +0.3
1,749,402 + +0.2
1,749,402 + -0.2
1,749,402 + +0.2
1,749,402 + +0.8
1,749,402 + +1.6
1,749,402 + -0.8
1,749,402 + +0.7
1,749,402 + -0.1
1,749,402 + +0.8
1,749,402 + -1.0
1,749,403 - +0.5
1,749,403 - +0.3
1,749,403 - -0.5
1,749,403 - +0.2
1,749,403 - -0.1
1,749,403 - -0.3
1,749,403 - +0.2
1,749,403 - +0.8
1,749,403 - -0.3
1,749,406 + +0.3
1,749,406 + +0.1
1,749,406 + +0.7
1,749,406 + +1.3
1,749,406 + +1.3
1,749,406 + +1.2
1,749,406 + +0.8
1,749,407 - -0.4
1,749,407 - +0.8
1,749,407 - +0.3
1,749,407 - +0.2
1,749,430 + -0.3
1,749,430 + -0.2
1,749,431 - +1.0
1,749,431 - -0.1
1,749,431 - -0.3
1,749,624 + ABZR87_RS08225 0.29 -1.1
1,749,625 - ABZR87_RS08225 0.29 -1.2
1,749,822 + ABZR87_RS08225 0.60 -0.2
1,749,822 + ABZR87_RS08225 0.60 +0.8
1,749,822 + ABZR87_RS08225 0.60 +0.6
1,749,822 + ABZR87_RS08225 0.60 -1.1
1,749,823 - ABZR87_RS08225 0.61 -0.4
1,749,823 - ABZR87_RS08225 0.61 -1.0
1,749,823 - ABZR87_RS08225 0.61 -0.8
1,749,823 - ABZR87_RS08225 0.61 -0.7
1,749,823 - ABZR87_RS08225 0.61 +0.8
1,750,061 + +0.9
1,750,062 - -0.7
1,750,062 - -1.5
1,750,248 + -1.7
1,750,248 + -0.4
1,750,248 + -1.7
1,750,248 + -0.5
1,750,248 - +0.3
1,750,249 - +0.1
1,750,249 - -0.4
1,750,249 - +0.8
1,750,249 - +1.0
1,750,472 + ABZR87_RS08230 0.44 -2.3
1,750,472 + ABZR87_RS08230 0.44 +0.1
1,750,505 + ABZR87_RS08230 0.50 -1.1
1,750,505 + ABZR87_RS08230 0.50 -1.2
1,750,506 - ABZR87_RS08230 0.50 -1.6
1,750,779 + +0.8
1,750,859 + ABZR87_RS08235 0.14 -0.4
1,751,654 + ABZR87_RS08245 0.54 -2.1
1,751,654 + ABZR87_RS08245 0.54 +0.4
1,751,655 - ABZR87_RS08245 0.54 -0.5
1,751,655 - ABZR87_RS08245 0.54 -0.1
1,751,655 - ABZR87_RS08245 0.54 +2.0
1,751,655 - ABZR87_RS08245 0.54 -0.0
1,751,656 + ABZR87_RS08245 0.55 -0.7
1,751,702 + ABZR87_RS08245 0.68 +0.4
1,751,702 + ABZR87_RS08245 0.68 -1.7
1,751,702 + ABZR87_RS08245 0.68 +0.3
1,751,702 + ABZR87_RS08245 0.68 -0.0
1,751,703 - ABZR87_RS08245 0.68 +1.1

Or see this region's nucleotide sequence