Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS07895

Experiment: rhizosphere sample 9; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS07890 and ABZR87_RS07895 are separated by 139 nucleotidesABZR87_RS07895 and ABZR87_RS07900 are separated by 31 nucleotides ABZR87_RS07890: ABZR87_RS07890 - LysR substrate-binding domain-containing protein, at 1,676,926 to 1,677,849 _RS07890 ABZR87_RS07895: ABZR87_RS07895 - MFS transporter, at 1,677,989 to 1,679,323 _RS07895 ABZR87_RS07900: ABZR87_RS07900 - M14 family metallopeptidase, at 1,679,355 to 1,680,341 _RS07900 Position (kb) 1677 1678 1679 1680Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1677.247 kb on + strand, within ABZR87_RS07890at 1677.248 kb on - strand, within ABZR87_RS07890at 1677.400 kb on + strand, within ABZR87_RS07890at 1677.400 kb on + strand, within ABZR87_RS07890at 1677.401 kb on - strand, within ABZR87_RS07890at 1677.614 kb on - strand, within ABZR87_RS07890at 1677.911 kb on + strandat 1677.911 kb on + strandat 1677.912 kb on - strandat 1677.912 kb on - strandat 1678.103 kb on + strandat 1678.106 kb on + strandat 1678.107 kb on - strandat 1678.121 kb on + strandat 1678.122 kb on - strandat 1678.122 kb on - strandat 1678.122 kb on - strandat 1678.127 kb on + strand, within ABZR87_RS07895at 1678.256 kb on + strand, within ABZR87_RS07895at 1678.257 kb on - strand, within ABZR87_RS07895at 1678.257 kb on - strand, within ABZR87_RS07895at 1678.346 kb on + strand, within ABZR87_RS07895at 1678.346 kb on + strand, within ABZR87_RS07895at 1678.346 kb on + strand, within ABZR87_RS07895at 1678.346 kb on + strand, within ABZR87_RS07895at 1678.346 kb on + strand, within ABZR87_RS07895at 1678.471 kb on + strand, within ABZR87_RS07895at 1678.471 kb on + strand, within ABZR87_RS07895at 1678.472 kb on - strand, within ABZR87_RS07895at 1678.472 kb on - strand, within ABZR87_RS07895at 1678.479 kb on - strand, within ABZR87_RS07895at 1678.553 kb on + strand, within ABZR87_RS07895at 1678.637 kb on + strand, within ABZR87_RS07895at 1678.637 kb on + strand, within ABZR87_RS07895at 1678.637 kb on + strand, within ABZR87_RS07895at 1678.637 kb on + strand, within ABZR87_RS07895at 1678.637 kb on + strand, within ABZR87_RS07895at 1678.638 kb on - strand, within ABZR87_RS07895at 1678.638 kb on - strand, within ABZR87_RS07895at 1678.638 kb on - strand, within ABZR87_RS07895at 1678.638 kb on - strand, within ABZR87_RS07895at 1678.639 kb on + strand, within ABZR87_RS07895at 1678.639 kb on + strand, within ABZR87_RS07895at 1678.640 kb on - strand, within ABZR87_RS07895at 1678.651 kb on + strand, within ABZR87_RS07895at 1678.652 kb on - strand, within ABZR87_RS07895at 1678.773 kb on + strand, within ABZR87_RS07895at 1678.774 kb on - strand, within ABZR87_RS07895at 1678.799 kb on + strand, within ABZR87_RS07895at 1678.799 kb on + strand, within ABZR87_RS07895at 1678.800 kb on - strand, within ABZR87_RS07895at 1678.814 kb on + strand, within ABZR87_RS07895at 1678.814 kb on + strand, within ABZR87_RS07895at 1678.815 kb on - strand, within ABZR87_RS07895at 1678.815 kb on - strand, within ABZR87_RS07895at 1678.815 kb on - strand, within ABZR87_RS07895at 1678.826 kb on + strand, within ABZR87_RS07895at 1678.826 kb on + strand, within ABZR87_RS07895at 1678.826 kb on + strand, within ABZR87_RS07895at 1678.827 kb on - strand, within ABZR87_RS07895at 1678.827 kb on - strand, within ABZR87_RS07895at 1678.827 kb on - strand, within ABZR87_RS07895at 1678.827 kb on - strand, within ABZR87_RS07895at 1678.827 kb on - strand, within ABZR87_RS07895at 1678.827 kb on - strand, within ABZR87_RS07895at 1678.827 kb on - strand, within ABZR87_RS07895at 1678.827 kb on - strand, within ABZR87_RS07895at 1678.827 kb on - strand, within ABZR87_RS07895at 1678.992 kb on - strand, within ABZR87_RS07895at 1679.064 kb on + strand, within ABZR87_RS07895at 1679.064 kb on + strand, within ABZR87_RS07895at 1679.064 kb on + strand, within ABZR87_RS07895at 1679.064 kb on + strand, within ABZR87_RS07895at 1679.064 kb on + strand, within ABZR87_RS07895at 1679.065 kb on - strand, within ABZR87_RS07895at 1679.065 kb on - strand, within ABZR87_RS07895at 1679.065 kb on - strand, within ABZR87_RS07895at 1679.125 kb on + strand, within ABZR87_RS07895at 1679.126 kb on - strand, within ABZR87_RS07895at 1679.153 kb on + strand, within ABZR87_RS07895at 1679.153 kb on + strand, within ABZR87_RS07895at 1679.153 kb on + strand, within ABZR87_RS07895at 1679.153 kb on + strand, within ABZR87_RS07895at 1679.154 kb on - strand, within ABZR87_RS07895at 1679.154 kb on - strand, within ABZR87_RS07895at 1679.154 kb on - strand, within ABZR87_RS07895at 1679.246 kb on + strandat 1679.246 kb on + strandat 1679.247 kb on - strandat 1679.420 kb on + strandat 1679.457 kb on + strand, within ABZR87_RS07900at 1679.457 kb on + strand, within ABZR87_RS07900at 1679.458 kb on - strand, within ABZR87_RS07900at 1679.458 kb on - strand, within ABZR87_RS07900at 1679.465 kb on + strand, within ABZR87_RS07900at 1679.466 kb on - strand, within ABZR87_RS07900at 1679.466 kb on - strand, within ABZR87_RS07900at 1679.594 kb on + strand, within ABZR87_RS07900at 1679.594 kb on + strand, within ABZR87_RS07900at 1679.594 kb on + strand, within ABZR87_RS07900at 1679.594 kb on + strand, within ABZR87_RS07900at 1679.595 kb on - strand, within ABZR87_RS07900at 1679.595 kb on - strand, within ABZR87_RS07900at 1679.595 kb on - strand, within ABZR87_RS07900at 1679.595 kb on - strand, within ABZR87_RS07900at 1679.622 kb on + strand, within ABZR87_RS07900at 1679.623 kb on - strand, within ABZR87_RS07900at 1679.623 kb on - strand, within ABZR87_RS07900at 1679.637 kb on - strand, within ABZR87_RS07900at 1679.637 kb on - strand, within ABZR87_RS07900at 1679.640 kb on - strand, within ABZR87_RS07900at 1679.928 kb on + strand, within ABZR87_RS07900at 1679.928 kb on + strand, within ABZR87_RS07900at 1679.929 kb on - strand, within ABZR87_RS07900at 1680.068 kb on + strand, within ABZR87_RS07900at 1680.068 kb on + strand, within ABZR87_RS07900at 1680.069 kb on - strand, within ABZR87_RS07900at 1680.069 kb on - strand, within ABZR87_RS07900at 1680.069 kb on - strand, within ABZR87_RS07900at 1680.069 kb on - strand, within ABZR87_RS07900at 1680.069 kb on - strand, within ABZR87_RS07900at 1680.069 kb on - strand, within ABZR87_RS07900at 1680.069 kb on - strand, within ABZR87_RS07900at 1680.069 kb on - strand, within ABZR87_RS07900at 1680.249 kb on + strandat 1680.249 kb on + strandat 1680.250 kb on - strandat 1680.250 kb on - strandat 1680.250 kb on - strandat 1680.251 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 9; outgrowth in LB
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1,677,247 + ABZR87_RS07890 0.35 +1.4
1,677,248 - ABZR87_RS07890 0.35 -0.9
1,677,400 + ABZR87_RS07890 0.51 -0.6
1,677,400 + ABZR87_RS07890 0.51 +0.2
1,677,401 - ABZR87_RS07890 0.51 -0.6
1,677,614 - ABZR87_RS07890 0.74 +1.0
1,677,911 + +1.0
1,677,911 + -0.6
1,677,912 - -1.4
1,677,912 - +0.6
1,678,103 + -0.0
1,678,106 + +0.4
1,678,107 - +1.3
1,678,121 + -0.3
1,678,122 - -0.6
1,678,122 - -0.5
1,678,122 - -0.4
1,678,127 + ABZR87_RS07895 0.10 -1.0
1,678,256 + ABZR87_RS07895 0.20 +0.0
1,678,257 - ABZR87_RS07895 0.20 -0.3
1,678,257 - ABZR87_RS07895 0.20 -1.2
1,678,346 + ABZR87_RS07895 0.27 -1.2
1,678,346 + ABZR87_RS07895 0.27 +0.9
1,678,346 + ABZR87_RS07895 0.27 -0.1
1,678,346 + ABZR87_RS07895 0.27 -2.7
1,678,346 + ABZR87_RS07895 0.27 -0.9
1,678,471 + ABZR87_RS07895 0.36 -0.1
1,678,471 + ABZR87_RS07895 0.36 +0.2
1,678,472 - ABZR87_RS07895 0.36 -0.1
1,678,472 - ABZR87_RS07895 0.36 -1.5
1,678,479 - ABZR87_RS07895 0.37 -1.2
1,678,553 + ABZR87_RS07895 0.42 +1.0
1,678,637 + ABZR87_RS07895 0.49 -1.7
1,678,637 + ABZR87_RS07895 0.49 -1.4
1,678,637 + ABZR87_RS07895 0.49 +0.5
1,678,637 + ABZR87_RS07895 0.49 +1.9
1,678,637 + ABZR87_RS07895 0.49 -1.0
1,678,638 - ABZR87_RS07895 0.49 -0.8
1,678,638 - ABZR87_RS07895 0.49 -0.8
1,678,638 - ABZR87_RS07895 0.49 -0.4
1,678,638 - ABZR87_RS07895 0.49 +0.1
1,678,639 + ABZR87_RS07895 0.49 -1.5
1,678,639 + ABZR87_RS07895 0.49 -0.5
1,678,640 - ABZR87_RS07895 0.49 +0.4
1,678,651 + ABZR87_RS07895 0.50 -2.9
1,678,652 - ABZR87_RS07895 0.50 -1.3
1,678,773 + ABZR87_RS07895 0.59 +0.0
1,678,774 - ABZR87_RS07895 0.59 -1.0
1,678,799 + ABZR87_RS07895 0.61 -0.2
1,678,799 + ABZR87_RS07895 0.61 -1.1
1,678,800 - ABZR87_RS07895 0.61 -0.9
1,678,814 + ABZR87_RS07895 0.62 +0.5
1,678,814 + ABZR87_RS07895 0.62 -1.5
1,678,815 - ABZR87_RS07895 0.62 -1.3
1,678,815 - ABZR87_RS07895 0.62 +0.2
1,678,815 - ABZR87_RS07895 0.62 +0.3
1,678,826 + ABZR87_RS07895 0.63 +0.2
1,678,826 + ABZR87_RS07895 0.63 +0.3
1,678,826 + ABZR87_RS07895 0.63 -0.1
1,678,827 - ABZR87_RS07895 0.63 -0.2
1,678,827 - ABZR87_RS07895 0.63 -0.3
1,678,827 - ABZR87_RS07895 0.63 +0.4
1,678,827 - ABZR87_RS07895 0.63 -0.5
1,678,827 - ABZR87_RS07895 0.63 -0.5
1,678,827 - ABZR87_RS07895 0.63 -0.4
1,678,827 - ABZR87_RS07895 0.63 -0.5
1,678,827 - ABZR87_RS07895 0.63 +0.2
1,678,827 - ABZR87_RS07895 0.63 +1.0
1,678,992 - ABZR87_RS07895 0.75 -0.7
1,679,064 + ABZR87_RS07895 0.81 -0.5
1,679,064 + ABZR87_RS07895 0.81 +0.3
1,679,064 + ABZR87_RS07895 0.81 -0.0
1,679,064 + ABZR87_RS07895 0.81 +0.8
1,679,064 + ABZR87_RS07895 0.81 +1.5
1,679,065 - ABZR87_RS07895 0.81 -1.5
1,679,065 - ABZR87_RS07895 0.81 +1.0
1,679,065 - ABZR87_RS07895 0.81 -0.2
1,679,125 + ABZR87_RS07895 0.85 -0.7
1,679,126 - ABZR87_RS07895 0.85 -0.9
1,679,153 + ABZR87_RS07895 0.87 +0.4
1,679,153 + ABZR87_RS07895 0.87 +0.3
1,679,153 + ABZR87_RS07895 0.87 -0.8
1,679,153 + ABZR87_RS07895 0.87 +1.0
1,679,154 - ABZR87_RS07895 0.87 -0.2
1,679,154 - ABZR87_RS07895 0.87 -0.9
1,679,154 - ABZR87_RS07895 0.87 -1.8
1,679,246 + +1.6
1,679,246 + -0.7
1,679,247 - -0.2
1,679,420 + -0.8
1,679,457 + ABZR87_RS07900 0.10 -0.3
1,679,457 + ABZR87_RS07900 0.10 +0.7
1,679,458 - ABZR87_RS07900 0.10 -1.5
1,679,458 - ABZR87_RS07900 0.10 -1.0
1,679,465 + ABZR87_RS07900 0.11 +0.3
1,679,466 - ABZR87_RS07900 0.11 -0.1
1,679,466 - ABZR87_RS07900 0.11 -0.0
1,679,594 + ABZR87_RS07900 0.24 -2.5
1,679,594 + ABZR87_RS07900 0.24 +1.4
1,679,594 + ABZR87_RS07900 0.24 -1.1
1,679,594 + ABZR87_RS07900 0.24 +0.0
1,679,595 - ABZR87_RS07900 0.24 -0.3
1,679,595 - ABZR87_RS07900 0.24 -0.1
1,679,595 - ABZR87_RS07900 0.24 +0.4
1,679,595 - ABZR87_RS07900 0.24 +0.6
1,679,622 + ABZR87_RS07900 0.27 +2.0
1,679,623 - ABZR87_RS07900 0.27 +0.6
1,679,623 - ABZR87_RS07900 0.27 -0.3
1,679,637 - ABZR87_RS07900 0.29 +0.8
1,679,637 - ABZR87_RS07900 0.29 +0.6
1,679,640 - ABZR87_RS07900 0.29 -1.0
1,679,928 + ABZR87_RS07900 0.58 +2.8
1,679,928 + ABZR87_RS07900 0.58 +0.5
1,679,929 - ABZR87_RS07900 0.58 -0.1
1,680,068 + ABZR87_RS07900 0.72 -1.2
1,680,068 + ABZR87_RS07900 0.72 -0.0
1,680,069 - ABZR87_RS07900 0.72 -0.3
1,680,069 - ABZR87_RS07900 0.72 -0.2
1,680,069 - ABZR87_RS07900 0.72 -1.6
1,680,069 - ABZR87_RS07900 0.72 +0.8
1,680,069 - ABZR87_RS07900 0.72 +1.5
1,680,069 - ABZR87_RS07900 0.72 -0.1
1,680,069 - ABZR87_RS07900 0.72 -0.6
1,680,069 - ABZR87_RS07900 0.72 +1.4
1,680,249 + +1.1
1,680,249 + +0.4
1,680,250 - -1.9
1,680,250 - -0.9
1,680,250 - +0.4
1,680,251 - -0.7

Or see this region's nucleotide sequence