Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06120

Experiment: rhizosphere sample 9; outgrowth in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS06115 and ABZR87_RS06120 are separated by 255 nucleotidesABZR87_RS06120 and ABZR87_RS06125 are separated by 185 nucleotides ABZR87_RS06115: ABZR87_RS06115 - hydrolase, at 1,305,093 to 1,305,776 _RS06115 ABZR87_RS06120: ABZR87_RS06120 - LysR family transcriptional regulator, at 1,306,032 to 1,306,964 _RS06120 ABZR87_RS06125: ABZR87_RS06125 - 3-hydroxybutyryl-CoA dehydrogenase, at 1,307,150 to 1,308,004 _RS06125 Position (kb) 1306 1307Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1305.076 kb on + strandat 1305.076 kb on + strandat 1305.076 kb on + strandat 1305.076 kb on + strandat 1305.077 kb on - strandat 1305.077 kb on - strandat 1305.077 kb on - strandat 1305.077 kb on - strandat 1305.077 kb on - strandat 1305.079 kb on - strandat 1305.166 kb on + strand, within ABZR87_RS06115at 1305.167 kb on - strand, within ABZR87_RS06115at 1305.167 kb on - strand, within ABZR87_RS06115at 1305.172 kb on + strand, within ABZR87_RS06115at 1305.172 kb on + strand, within ABZR87_RS06115at 1305.173 kb on - strand, within ABZR87_RS06115at 1305.173 kb on - strand, within ABZR87_RS06115at 1305.191 kb on - strand, within ABZR87_RS06115at 1305.232 kb on + strand, within ABZR87_RS06115at 1305.232 kb on + strand, within ABZR87_RS06115at 1305.232 kb on + strand, within ABZR87_RS06115at 1305.232 kb on + strand, within ABZR87_RS06115at 1305.233 kb on - strand, within ABZR87_RS06115at 1305.233 kb on - strand, within ABZR87_RS06115at 1305.233 kb on - strand, within ABZR87_RS06115at 1305.328 kb on + strand, within ABZR87_RS06115at 1305.328 kb on + strand, within ABZR87_RS06115at 1305.350 kb on + strand, within ABZR87_RS06115at 1305.350 kb on + strand, within ABZR87_RS06115at 1305.351 kb on - strand, within ABZR87_RS06115at 1305.376 kb on + strand, within ABZR87_RS06115at 1305.376 kb on + strand, within ABZR87_RS06115at 1305.376 kb on + strand, within ABZR87_RS06115at 1305.376 kb on + strand, within ABZR87_RS06115at 1305.376 kb on + strand, within ABZR87_RS06115at 1305.376 kb on + strand, within ABZR87_RS06115at 1305.376 kb on + strand, within ABZR87_RS06115at 1305.377 kb on - strand, within ABZR87_RS06115at 1305.377 kb on - strand, within ABZR87_RS06115at 1305.377 kb on - strand, within ABZR87_RS06115at 1305.377 kb on - strand, within ABZR87_RS06115at 1305.377 kb on - strand, within ABZR87_RS06115at 1305.377 kb on - strand, within ABZR87_RS06115at 1305.377 kb on - strand, within ABZR87_RS06115at 1305.377 kb on - strand, within ABZR87_RS06115at 1305.377 kb on - strand, within ABZR87_RS06115at 1305.377 kb on - strand, within ABZR87_RS06115at 1305.571 kb on + strand, within ABZR87_RS06115at 1305.572 kb on - strand, within ABZR87_RS06115at 1305.577 kb on + strand, within ABZR87_RS06115at 1305.578 kb on - strand, within ABZR87_RS06115at 1305.609 kb on - strand, within ABZR87_RS06115at 1305.609 kb on - strand, within ABZR87_RS06115at 1305.609 kb on - strand, within ABZR87_RS06115at 1305.752 kb on + strandat 1305.804 kb on + strandat 1305.804 kb on + strandat 1305.804 kb on + strandat 1305.804 kb on + strandat 1305.804 kb on + strandat 1305.805 kb on - strandat 1305.805 kb on - strandat 1305.805 kb on - strandat 1305.869 kb on + strandat 1305.869 kb on + strandat 1305.869 kb on + strandat 1305.869 kb on + strandat 1305.870 kb on - strandat 1305.870 kb on - strandat 1305.870 kb on - strandat 1306.183 kb on + strand, within ABZR87_RS06120at 1306.183 kb on + strand, within ABZR87_RS06120at 1306.184 kb on - strand, within ABZR87_RS06120at 1306.184 kb on - strand, within ABZR87_RS06120at 1306.277 kb on - strand, within ABZR87_RS06120at 1306.277 kb on - strand, within ABZR87_RS06120at 1306.391 kb on - strand, within ABZR87_RS06120at 1306.442 kb on - strand, within ABZR87_RS06120at 1306.453 kb on + strand, within ABZR87_RS06120at 1306.453 kb on + strand, within ABZR87_RS06120at 1306.453 kb on + strand, within ABZR87_RS06120at 1306.454 kb on - strand, within ABZR87_RS06120at 1306.613 kb on - strand, within ABZR87_RS06120at 1306.683 kb on + strand, within ABZR87_RS06120at 1306.683 kb on + strand, within ABZR87_RS06120at 1306.684 kb on - strand, within ABZR87_RS06120at 1306.684 kb on - strand, within ABZR87_RS06120at 1306.684 kb on - strand, within ABZR87_RS06120at 1306.684 kb on - strand, within ABZR87_RS06120at 1306.684 kb on - strand, within ABZR87_RS06120at 1306.684 kb on - strand, within ABZR87_RS06120at 1306.768 kb on + strand, within ABZR87_RS06120at 1306.768 kb on + strand, within ABZR87_RS06120at 1306.768 kb on + strand, within ABZR87_RS06120at 1306.769 kb on - strand, within ABZR87_RS06120at 1306.769 kb on - strand, within ABZR87_RS06120at 1306.769 kb on - strand, within ABZR87_RS06120at 1306.769 kb on - strand, within ABZR87_RS06120at 1306.771 kb on + strand, within ABZR87_RS06120at 1306.771 kb on + strand, within ABZR87_RS06120at 1306.771 kb on + strand, within ABZR87_RS06120at 1306.771 kb on + strand, within ABZR87_RS06120at 1306.771 kb on + strand, within ABZR87_RS06120at 1306.771 kb on + strand, within ABZR87_RS06120at 1306.771 kb on + strand, within ABZR87_RS06120at 1306.772 kb on - strand, within ABZR87_RS06120at 1306.772 kb on - strand, within ABZR87_RS06120at 1306.772 kb on - strand, within ABZR87_RS06120at 1306.772 kb on - strand, within ABZR87_RS06120at 1306.772 kb on - strand, within ABZR87_RS06120at 1306.836 kb on - strand, within ABZR87_RS06120at 1307.017 kb on - strandat 1307.081 kb on + strandat 1307.130 kb on + strandat 1307.130 kb on + strandat 1307.130 kb on + strandat 1307.130 kb on + strandat 1307.130 kb on + strandat 1307.130 kb on + strandat 1307.130 kb on + strandat 1307.131 kb on - strandat 1307.131 kb on - strandat 1307.248 kb on + strand, within ABZR87_RS06125at 1307.248 kb on + strand, within ABZR87_RS06125at 1307.249 kb on - strand, within ABZR87_RS06125at 1307.249 kb on - strand, within ABZR87_RS06125at 1307.378 kb on + strand, within ABZR87_RS06125at 1307.378 kb on + strand, within ABZR87_RS06125at 1307.378 kb on + strand, within ABZR87_RS06125at 1307.891 kb on + strand, within ABZR87_RS06125at 1307.891 kb on + strand, within ABZR87_RS06125at 1307.891 kb on + strand, within ABZR87_RS06125at 1307.892 kb on - strand, within ABZR87_RS06125at 1307.892 kb on - strand, within ABZR87_RS06125at 1307.892 kb on - strand, within ABZR87_RS06125at 1307.892 kb on - strand, within ABZR87_RS06125at 1307.916 kb on - strand, within ABZR87_RS06125

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 9; outgrowth in LB
remove
1,305,076 + -0.3
1,305,076 + +1.1
1,305,076 + -0.3
1,305,076 + +0.1
1,305,077 - +0.4
1,305,077 - -0.5
1,305,077 - -0.7
1,305,077 - +0.7
1,305,077 - -0.5
1,305,079 - -0.6
1,305,166 + ABZR87_RS06115 0.11 -0.3
1,305,167 - ABZR87_RS06115 0.11 +0.4
1,305,167 - ABZR87_RS06115 0.11 +2.1
1,305,172 + ABZR87_RS06115 0.12 +2.9
1,305,172 + ABZR87_RS06115 0.12 +0.4
1,305,173 - ABZR87_RS06115 0.12 +0.9
1,305,173 - ABZR87_RS06115 0.12 +0.3
1,305,191 - ABZR87_RS06115 0.14 +1.0
1,305,232 + ABZR87_RS06115 0.20 -0.6
1,305,232 + ABZR87_RS06115 0.20 +0.2
1,305,232 + ABZR87_RS06115 0.20 +0.5
1,305,232 + ABZR87_RS06115 0.20 -0.3
1,305,233 - ABZR87_RS06115 0.20 -1.0
1,305,233 - ABZR87_RS06115 0.20 -0.7
1,305,233 - ABZR87_RS06115 0.20 -1.2
1,305,328 + ABZR87_RS06115 0.34 +0.5
1,305,328 + ABZR87_RS06115 0.34 +0.2
1,305,350 + ABZR87_RS06115 0.38 +0.6
1,305,350 + ABZR87_RS06115 0.38 -0.9
1,305,351 - ABZR87_RS06115 0.38 +0.7
1,305,376 + ABZR87_RS06115 0.41 -0.6
1,305,376 + ABZR87_RS06115 0.41 -1.0
1,305,376 + ABZR87_RS06115 0.41 +0.4
1,305,376 + ABZR87_RS06115 0.41 +0.5
1,305,376 + ABZR87_RS06115 0.41 -0.6
1,305,376 + ABZR87_RS06115 0.41 +3.5
1,305,376 + ABZR87_RS06115 0.41 +0.7
1,305,377 - ABZR87_RS06115 0.42 +0.8
1,305,377 - ABZR87_RS06115 0.42 -0.4
1,305,377 - ABZR87_RS06115 0.42 -2.3
1,305,377 - ABZR87_RS06115 0.42 +0.0
1,305,377 - ABZR87_RS06115 0.42 -0.2
1,305,377 - ABZR87_RS06115 0.42 +1.9
1,305,377 - ABZR87_RS06115 0.42 -1.6
1,305,377 - ABZR87_RS06115 0.42 -0.3
1,305,377 - ABZR87_RS06115 0.42 -1.7
1,305,377 - ABZR87_RS06115 0.42 +1.5
1,305,571 + ABZR87_RS06115 0.70 +0.3
1,305,572 - ABZR87_RS06115 0.70 +1.1
1,305,577 + ABZR87_RS06115 0.71 -0.5
1,305,578 - ABZR87_RS06115 0.71 -0.7
1,305,609 - ABZR87_RS06115 0.75 +0.6
1,305,609 - ABZR87_RS06115 0.75 -1.1
1,305,609 - ABZR87_RS06115 0.75 +1.2
1,305,752 + -1.1
1,305,804 + +0.1
1,305,804 + +0.7
1,305,804 + +1.2
1,305,804 + +0.4
1,305,804 + -1.4
1,305,805 - -0.6
1,305,805 - -0.9
1,305,805 - -1.4
1,305,869 + -0.6
1,305,869 + -0.2
1,305,869 + -0.6
1,305,869 + -0.8
1,305,870 - +2.1
1,305,870 - -1.2
1,305,870 - -1.1
1,306,183 + ABZR87_RS06120 0.16 +2.4
1,306,183 + ABZR87_RS06120 0.16 -1.3
1,306,184 - ABZR87_RS06120 0.16 -1.3
1,306,184 - ABZR87_RS06120 0.16 +1.7
1,306,277 - ABZR87_RS06120 0.26 +1.0
1,306,277 - ABZR87_RS06120 0.26 -0.1
1,306,391 - ABZR87_RS06120 0.38 -2.2
1,306,442 - ABZR87_RS06120 0.44 -0.7
1,306,453 + ABZR87_RS06120 0.45 -0.5
1,306,453 + ABZR87_RS06120 0.45 -1.0
1,306,453 + ABZR87_RS06120 0.45 -0.4
1,306,454 - ABZR87_RS06120 0.45 -0.8
1,306,613 - ABZR87_RS06120 0.62 -1.3
1,306,683 + ABZR87_RS06120 0.70 -1.0
1,306,683 + ABZR87_RS06120 0.70 +0.3
1,306,684 - ABZR87_RS06120 0.70 -0.4
1,306,684 - ABZR87_RS06120 0.70 +1.3
1,306,684 - ABZR87_RS06120 0.70 +0.9
1,306,684 - ABZR87_RS06120 0.70 +0.1
1,306,684 - ABZR87_RS06120 0.70 -1.4
1,306,684 - ABZR87_RS06120 0.70 +1.3
1,306,768 + ABZR87_RS06120 0.79 +0.5
1,306,768 + ABZR87_RS06120 0.79 +1.1
1,306,768 + ABZR87_RS06120 0.79 +1.1
1,306,769 - ABZR87_RS06120 0.79 +0.3
1,306,769 - ABZR87_RS06120 0.79 +0.7
1,306,769 - ABZR87_RS06120 0.79 -0.7
1,306,769 - ABZR87_RS06120 0.79 -0.6
1,306,771 + ABZR87_RS06120 0.79 -0.5
1,306,771 + ABZR87_RS06120 0.79 +1.7
1,306,771 + ABZR87_RS06120 0.79 -3.2
1,306,771 + ABZR87_RS06120 0.79 +0.9
1,306,771 + ABZR87_RS06120 0.79 +0.0
1,306,771 + ABZR87_RS06120 0.79 +0.6
1,306,771 + ABZR87_RS06120 0.79 +0.1
1,306,772 - ABZR87_RS06120 0.79 +0.6
1,306,772 - ABZR87_RS06120 0.79 -0.4
1,306,772 - ABZR87_RS06120 0.79 -0.1
1,306,772 - ABZR87_RS06120 0.79 -0.7
1,306,772 - ABZR87_RS06120 0.79 +0.3
1,306,836 - ABZR87_RS06120 0.86 -0.3
1,307,017 - +0.3
1,307,081 + -0.6
1,307,130 + +0.1
1,307,130 + -1.8
1,307,130 + +0.8
1,307,130 + +0.1
1,307,130 + +1.7
1,307,130 + +3.5
1,307,130 + +1.4
1,307,131 - -2.2
1,307,131 - +0.4
1,307,248 + ABZR87_RS06125 0.11 +0.4
1,307,248 + ABZR87_RS06125 0.11 -0.5
1,307,249 - ABZR87_RS06125 0.12 -0.5
1,307,249 - ABZR87_RS06125 0.12 +0.1
1,307,378 + ABZR87_RS06125 0.27 -1.9
1,307,378 + ABZR87_RS06125 0.27 -0.9
1,307,378 + ABZR87_RS06125 0.27 -0.7
1,307,891 + ABZR87_RS06125 0.87 +1.4
1,307,891 + ABZR87_RS06125 0.87 -0.2
1,307,891 + ABZR87_RS06125 0.87 -1.7
1,307,892 - ABZR87_RS06125 0.87 +0.9
1,307,892 - ABZR87_RS06125 0.87 -2.4
1,307,892 - ABZR87_RS06125 0.87 +2.1
1,307,892 - ABZR87_RS06125 0.87 -1.0
1,307,916 - ABZR87_RS06125 0.90 +1.8

Or see this region's nucleotide sequence