Experiment: rhizosphere sample 9; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04495 and ABZR87_RS04500 are separated by 31 nucleotides ABZR87_RS04500 and ABZR87_RS04505 overlap by 4 nucleotides ABZR87_RS04505 and ABZR87_RS04510 are separated by 19 nucleotides ABZR87_RS04510 and ABZR87_RS04515 are separated by 158 nucleotides
ABZR87_RS04495: ABZR87_RS04495 - TorF family putative porin, at 938,019 to 938,816
_RS04495
ABZR87_RS04500: ABZR87_RS04500 - hypothetical protein, at 938,848 to 938,973
_RS04500
ABZR87_RS04505: ABZR87_RS04505 - K(+)-transporting ATPase subunit F, at 938,970 to 939,059
_RS04505
ABZR87_RS04510: ABZR87_RS04510 - potassium-transporting ATPase subunit KdpA, at 939,079 to 940,851
_RS04510
ABZR87_RS04515: ABZR87_RS04515 - potassium-transporting ATPase subunit KdpB, at 941,010 to 943,235
_RS04515
Position (kb) 939
940
941 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 938.184 kb on + strand, within ABZR87_RS04495 at 938.185 kb on - strand, within ABZR87_RS04495 at 938.190 kb on + strand, within ABZR87_RS04495 at 938.191 kb on - strand, within ABZR87_RS04495 at 938.245 kb on - strand, within ABZR87_RS04495 at 938.265 kb on + strand, within ABZR87_RS04495 at 938.265 kb on + strand, within ABZR87_RS04495 at 938.265 kb on + strand, within ABZR87_RS04495 at 938.265 kb on + strand, within ABZR87_RS04495 at 938.266 kb on - strand, within ABZR87_RS04495 at 938.266 kb on - strand, within ABZR87_RS04495 at 938.266 kb on - strand, within ABZR87_RS04495 at 938.355 kb on + strand, within ABZR87_RS04495 at 938.355 kb on + strand, within ABZR87_RS04495 at 938.355 kb on + strand, within ABZR87_RS04495 at 938.355 kb on + strand, within ABZR87_RS04495 at 938.356 kb on - strand, within ABZR87_RS04495 at 938.356 kb on - strand, within ABZR87_RS04495 at 938.406 kb on + strand, within ABZR87_RS04495 at 938.407 kb on - strand, within ABZR87_RS04495 at 938.409 kb on + strand, within ABZR87_RS04495 at 938.409 kb on + strand, within ABZR87_RS04495 at 938.409 kb on + strand, within ABZR87_RS04495 at 938.409 kb on + strand, within ABZR87_RS04495 at 938.410 kb on - strand, within ABZR87_RS04495 at 938.410 kb on - strand, within ABZR87_RS04495 at 938.410 kb on - strand, within ABZR87_RS04495 at 938.410 kb on - strand, within ABZR87_RS04495 at 938.410 kb on - strand, within ABZR87_RS04495 at 938.410 kb on - strand, within ABZR87_RS04495 at 938.410 kb on - strand, within ABZR87_RS04495 at 938.412 kb on + strand, within ABZR87_RS04495 at 938.425 kb on - strand, within ABZR87_RS04495 at 938.437 kb on - strand, within ABZR87_RS04495 at 938.437 kb on - strand, within ABZR87_RS04495 at 938.463 kb on + strand, within ABZR87_RS04495 at 938.500 kb on - strand, within ABZR87_RS04495 at 938.500 kb on - strand, within ABZR87_RS04495 at 938.538 kb on - strand, within ABZR87_RS04495 at 938.554 kb on - strand, within ABZR87_RS04495 at 938.554 kb on - strand, within ABZR87_RS04495 at 938.554 kb on - strand, within ABZR87_RS04495 at 938.597 kb on + strand, within ABZR87_RS04495 at 938.597 kb on + strand, within ABZR87_RS04495 at 938.598 kb on - strand, within ABZR87_RS04495 at 938.598 kb on - strand, within ABZR87_RS04495 at 938.619 kb on + strand, within ABZR87_RS04495 at 938.655 kb on + strand, within ABZR87_RS04495 at 938.655 kb on + strand, within ABZR87_RS04495 at 938.656 kb on - strand, within ABZR87_RS04495 at 938.656 kb on - strand, within ABZR87_RS04495 at 938.719 kb on - strand, within ABZR87_RS04495 at 938.719 kb on - strand, within ABZR87_RS04495 at 938.749 kb on - strand at 938.769 kb on + strand at 938.769 kb on + strand at 938.769 kb on + strand at 938.769 kb on + strand at 938.769 kb on + strand at 938.769 kb on + strand at 938.770 kb on - strand at 938.770 kb on - strand at 938.770 kb on - strand at 938.770 kb on - strand at 938.770 kb on - strand at 938.770 kb on - strand at 938.770 kb on - strand at 938.847 kb on + strand at 938.848 kb on - strand at 938.848 kb on - strand at 938.848 kb on - strand at 938.861 kb on - strand, within ABZR87_RS04500 at 938.861 kb on - strand, within ABZR87_RS04500 at 938.861 kb on - strand, within ABZR87_RS04500 at 938.982 kb on + strand, within ABZR87_RS04505 at 938.982 kb on + strand, within ABZR87_RS04505 at 938.982 kb on + strand, within ABZR87_RS04505 at 938.983 kb on - strand, within ABZR87_RS04505 at 938.983 kb on - strand, within ABZR87_RS04505 at 938.983 kb on - strand, within ABZR87_RS04505 at 938.983 kb on - strand, within ABZR87_RS04505 at 938.983 kb on - strand, within ABZR87_RS04505 at 939.021 kb on + strand, within ABZR87_RS04505 at 939.021 kb on + strand, within ABZR87_RS04505 at 939.021 kb on + strand, within ABZR87_RS04505 at 939.058 kb on - strand at 939.058 kb on - strand at 939.109 kb on + strand at 939.109 kb on + strand at 939.110 kb on - strand at 939.151 kb on + strand at 939.151 kb on + strand at 939.151 kb on + strand at 939.152 kb on - strand at 939.152 kb on - strand at 939.152 kb on - strand at 939.152 kb on - strand at 939.152 kb on - strand at 939.152 kb on - strand at 939.152 kb on - strand at 939.153 kb on + strand at 939.153 kb on + strand at 939.153 kb on + strand at 939.154 kb on - strand at 939.154 kb on - strand at 939.221 kb on - strand at 939.269 kb on - strand, within ABZR87_RS04510 at 939.316 kb on + strand, within ABZR87_RS04510 at 939.317 kb on - strand, within ABZR87_RS04510 at 939.436 kb on + strand, within ABZR87_RS04510 at 939.437 kb on - strand, within ABZR87_RS04510 at 939.460 kb on + strand, within ABZR87_RS04510 at 939.460 kb on + strand, within ABZR87_RS04510 at 939.460 kb on + strand, within ABZR87_RS04510 at 939.460 kb on + strand, within ABZR87_RS04510 at 939.461 kb on - strand, within ABZR87_RS04510 at 939.461 kb on - strand, within ABZR87_RS04510 at 939.461 kb on - strand, within ABZR87_RS04510 at 939.610 kb on + strand, within ABZR87_RS04510 at 939.610 kb on + strand, within ABZR87_RS04510 at 939.611 kb on - strand, within ABZR87_RS04510 at 939.611 kb on - strand, within ABZR87_RS04510 at 939.611 kb on - strand, within ABZR87_RS04510 at 939.611 kb on - strand, within ABZR87_RS04510 at 939.611 kb on - strand, within ABZR87_RS04510 at 939.611 kb on - strand, within ABZR87_RS04510 at 939.685 kb on + strand, within ABZR87_RS04510 at 939.686 kb on - strand, within ABZR87_RS04510 at 939.686 kb on - strand, within ABZR87_RS04510 at 939.718 kb on + strand, within ABZR87_RS04510 at 939.718 kb on + strand, within ABZR87_RS04510 at 939.718 kb on + strand, within ABZR87_RS04510 at 939.719 kb on - strand, within ABZR87_RS04510 at 939.719 kb on - strand, within ABZR87_RS04510 at 939.719 kb on - strand, within ABZR87_RS04510 at 939.975 kb on + strand, within ABZR87_RS04510 at 939.975 kb on + strand, within ABZR87_RS04510 at 939.975 kb on + strand, within ABZR87_RS04510 at 939.975 kb on + strand, within ABZR87_RS04510 at 939.975 kb on + strand, within ABZR87_RS04510 at 939.976 kb on - strand, within ABZR87_RS04510 at 940.330 kb on + strand, within ABZR87_RS04510 at 940.330 kb on + strand, within ABZR87_RS04510 at 940.330 kb on + strand, within ABZR87_RS04510 at 940.330 kb on + strand, within ABZR87_RS04510 at 940.331 kb on - strand, within ABZR87_RS04510 at 940.374 kb on + strand, within ABZR87_RS04510 at 940.374 kb on + strand, within ABZR87_RS04510 at 940.385 kb on - strand, within ABZR87_RS04510 at 940.385 kb on - strand, within ABZR87_RS04510 at 940.546 kb on + strand, within ABZR87_RS04510 at 940.547 kb on - strand, within ABZR87_RS04510 at 940.547 kb on - strand, within ABZR87_RS04510 at 940.547 kb on - strand, within ABZR87_RS04510 at 940.615 kb on + strand, within ABZR87_RS04510 at 940.615 kb on + strand, within ABZR87_RS04510 at 940.616 kb on - strand, within ABZR87_RS04510 at 940.801 kb on + strand at 940.801 kb on + strand at 940.801 kb on + strand at 940.802 kb on - strand at 940.802 kb on - strand at 940.802 kb on - strand at 940.802 kb on - strand at 940.802 kb on - strand at 940.870 kb on - strand at 940.907 kb on + strand at 940.908 kb on - strand at 940.908 kb on - strand at 940.908 kb on - strand at 940.915 kb on + strand at 940.915 kb on + strand at 940.916 kb on - strand at 940.983 kb on - strand at 940.994 kb on + strand at 940.995 kb on - strand at 941.009 kb on + strand at 941.009 kb on + strand at 941.010 kb on - strand at 941.010 kb on - strand at 941.010 kb on - strand at 941.010 kb on - strand at 941.010 kb on - strand at 941.015 kb on + strand at 941.082 kb on - strand at 941.087 kb on + strand at 941.087 kb on + strand at 941.087 kb on + strand at 941.088 kb on - strand at 941.126 kb on + strand at 941.126 kb on + strand at 941.127 kb on - strand at 941.127 kb on - strand at 941.127 kb on - strand at 941.210 kb on + strand at 941.211 kb on - strand at 941.268 kb on + strand, within ABZR87_RS04515 at 941.269 kb on - strand, within ABZR87_RS04515
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 9; outgrowth in LB remove 938,184 + ABZR87_RS04495 0.21 -2.0 938,185 - ABZR87_RS04495 0.21 +1.6 938,190 + ABZR87_RS04495 0.21 -0.6 938,191 - ABZR87_RS04495 0.22 -1.2 938,245 - ABZR87_RS04495 0.28 +1.5 938,265 + ABZR87_RS04495 0.31 -0.5 938,265 + ABZR87_RS04495 0.31 +0.0 938,265 + ABZR87_RS04495 0.31 -0.9 938,265 + ABZR87_RS04495 0.31 +0.0 938,266 - ABZR87_RS04495 0.31 +0.3 938,266 - ABZR87_RS04495 0.31 -1.0 938,266 - ABZR87_RS04495 0.31 -0.1 938,355 + ABZR87_RS04495 0.42 -0.6 938,355 + ABZR87_RS04495 0.42 +1.1 938,355 + ABZR87_RS04495 0.42 -0.9 938,355 + ABZR87_RS04495 0.42 -0.5 938,356 - ABZR87_RS04495 0.42 +0.5 938,356 - ABZR87_RS04495 0.42 +0.4 938,406 + ABZR87_RS04495 0.48 -0.3 938,407 - ABZR87_RS04495 0.49 -0.7 938,409 + ABZR87_RS04495 0.49 +0.1 938,409 + ABZR87_RS04495 0.49 -1.5 938,409 + ABZR87_RS04495 0.49 +0.2 938,409 + ABZR87_RS04495 0.49 -1.0 938,410 - ABZR87_RS04495 0.49 -0.4 938,410 - ABZR87_RS04495 0.49 -0.6 938,410 - ABZR87_RS04495 0.49 +0.6 938,410 - ABZR87_RS04495 0.49 -0.8 938,410 - ABZR87_RS04495 0.49 -0.8 938,410 - ABZR87_RS04495 0.49 +0.8 938,410 - ABZR87_RS04495 0.49 -0.8 938,412 + ABZR87_RS04495 0.49 +0.6 938,425 - ABZR87_RS04495 0.51 +0.6 938,437 - ABZR87_RS04495 0.52 -0.2 938,437 - ABZR87_RS04495 0.52 -0.8 938,463 + ABZR87_RS04495 0.56 -0.8 938,500 - ABZR87_RS04495 0.60 +0.5 938,500 - ABZR87_RS04495 0.60 +0.7 938,538 - ABZR87_RS04495 0.65 -0.9 938,554 - ABZR87_RS04495 0.67 +1.9 938,554 - ABZR87_RS04495 0.67 +0.3 938,554 - ABZR87_RS04495 0.67 +1.3 938,597 + ABZR87_RS04495 0.72 -0.5 938,597 + ABZR87_RS04495 0.72 -0.9 938,598 - ABZR87_RS04495 0.73 -0.0 938,598 - ABZR87_RS04495 0.73 -1.8 938,619 + ABZR87_RS04495 0.75 -0.3 938,655 + ABZR87_RS04495 0.80 +0.1 938,655 + ABZR87_RS04495 0.80 -1.0 938,656 - ABZR87_RS04495 0.80 -0.5 938,656 - ABZR87_RS04495 0.80 -0.3 938,719 - ABZR87_RS04495 0.88 +1.0 938,719 - ABZR87_RS04495 0.88 +0.0 938,749 - +1.1 938,769 + -0.0 938,769 + -0.9 938,769 + -0.9 938,769 + -1.1 938,769 + +0.0 938,769 + -0.7 938,770 - +0.8 938,770 - -0.7 938,770 - +0.2 938,770 - -0.3 938,770 - -0.3 938,770 - -0.0 938,770 - +0.7 938,847 + +1.3 938,848 - -1.0 938,848 - -0.1 938,848 - -0.2 938,861 - ABZR87_RS04500 0.10 -0.8 938,861 - ABZR87_RS04500 0.10 +1.7 938,861 - ABZR87_RS04500 0.10 +0.2 938,982 + ABZR87_RS04505 0.13 -1.5 938,982 + ABZR87_RS04505 0.13 -0.9 938,982 + ABZR87_RS04505 0.13 +0.9 938,983 - ABZR87_RS04505 0.14 -0.7 938,983 - ABZR87_RS04505 0.14 -0.5 938,983 - ABZR87_RS04505 0.14 -0.2 938,983 - ABZR87_RS04505 0.14 +0.8 938,983 - ABZR87_RS04505 0.14 +0.6 939,021 + ABZR87_RS04505 0.57 +0.2 939,021 + ABZR87_RS04505 0.57 -0.1 939,021 + ABZR87_RS04505 0.57 +0.6 939,058 - -0.7 939,058 - -0.3 939,109 + +0.3 939,109 + -1.3 939,110 - +0.3 939,151 + -0.3 939,151 + +0.7 939,151 + +0.4 939,152 - -0.7 939,152 - +0.5 939,152 - +0.8 939,152 - +0.3 939,152 - +1.2 939,152 - -0.8 939,152 - +0.3 939,153 + -1.1 939,153 + -0.1 939,153 + +0.1 939,154 - +0.6 939,154 - +2.3 939,221 - -0.9 939,269 - ABZR87_RS04510 0.11 -2.1 939,316 + ABZR87_RS04510 0.13 +0.6 939,317 - ABZR87_RS04510 0.13 +1.2 939,436 + ABZR87_RS04510 0.20 +0.1 939,437 - ABZR87_RS04510 0.20 +0.1 939,460 + ABZR87_RS04510 0.21 -2.0 939,460 + ABZR87_RS04510 0.21 +1.9 939,460 + ABZR87_RS04510 0.21 -1.8 939,460 + ABZR87_RS04510 0.21 -0.1 939,461 - ABZR87_RS04510 0.22 -0.1 939,461 - ABZR87_RS04510 0.22 +1.1 939,461 - ABZR87_RS04510 0.22 +0.3 939,610 + ABZR87_RS04510 0.30 -1.0 939,610 + ABZR87_RS04510 0.30 +1.5 939,611 - ABZR87_RS04510 0.30 +0.9 939,611 - ABZR87_RS04510 0.30 -0.2 939,611 - ABZR87_RS04510 0.30 -0.9 939,611 - ABZR87_RS04510 0.30 +0.2 939,611 - ABZR87_RS04510 0.30 -1.1 939,611 - ABZR87_RS04510 0.30 -0.6 939,685 + ABZR87_RS04510 0.34 +1.9 939,686 - ABZR87_RS04510 0.34 +1.4 939,686 - ABZR87_RS04510 0.34 -0.1 939,718 + ABZR87_RS04510 0.36 -0.8 939,718 + ABZR87_RS04510 0.36 +1.7 939,718 + ABZR87_RS04510 0.36 +0.8 939,719 - ABZR87_RS04510 0.36 -0.4 939,719 - ABZR87_RS04510 0.36 -2.1 939,719 - ABZR87_RS04510 0.36 -1.2 939,975 + ABZR87_RS04510 0.51 +0.9 939,975 + ABZR87_RS04510 0.51 -0.8 939,975 + ABZR87_RS04510 0.51 -0.5 939,975 + ABZR87_RS04510 0.51 +1.9 939,975 + ABZR87_RS04510 0.51 -2.3 939,976 - ABZR87_RS04510 0.51 -0.4 940,330 + ABZR87_RS04510 0.71 -1.5 940,330 + ABZR87_RS04510 0.71 +0.1 940,330 + ABZR87_RS04510 0.71 -0.9 940,330 + ABZR87_RS04510 0.71 +0.8 940,331 - ABZR87_RS04510 0.71 -1.5 940,374 + ABZR87_RS04510 0.73 -0.7 940,374 + ABZR87_RS04510 0.73 +0.4 940,385 - ABZR87_RS04510 0.74 +0.5 940,385 - ABZR87_RS04510 0.74 +0.3 940,546 + ABZR87_RS04510 0.83 -1.3 940,547 - ABZR87_RS04510 0.83 +1.3 940,547 - ABZR87_RS04510 0.83 +1.0 940,547 - ABZR87_RS04510 0.83 +1.0 940,615 + ABZR87_RS04510 0.87 -0.9 940,615 + ABZR87_RS04510 0.87 +0.8 940,616 - ABZR87_RS04510 0.87 +0.8 940,801 + -0.4 940,801 + +0.4 940,801 + +0.2 940,802 - -0.1 940,802 - +1.3 940,802 - +0.7 940,802 - -0.5 940,802 - +0.5 940,870 - -0.9 940,907 + -1.0 940,908 - -1.3 940,908 - -0.4 940,908 - -0.0 940,915 + -1.5 940,915 + -0.4 940,916 - +0.0 940,983 - +0.6 940,994 + -0.8 940,995 - -3.3 941,009 + -0.1 941,009 + +0.2 941,010 - -0.5 941,010 - -0.5 941,010 - -1.2 941,010 - +4.5 941,010 - -1.5 941,015 + -1.8 941,082 - -0.7 941,087 + +0.9 941,087 + -0.4 941,087 + +0.3 941,088 - +0.7 941,126 + +0.5 941,126 + +0.3 941,127 - -2.4 941,127 - -1.0 941,127 - -0.2 941,210 + -0.1 941,211 - -0.2 941,268 + ABZR87_RS04515 0.12 +0.3 941,269 - ABZR87_RS04515 0.12 -0.2
Or see this region's nucleotide sequence