Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS04405

Experiment: rhizosphere sample 9; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS04400 and ABZR87_RS04405 are separated by 54 nucleotidesABZR87_RS04405 and ABZR87_RS04410 are separated by 28 nucleotides ABZR87_RS04400: ABZR87_RS04400 - dienelactone hydrolase family protein, at 923,851 to 924,906 _RS04400 ABZR87_RS04405: ABZR87_RS04405 - chromate resistance protein ChrB domain-containing protein, at 924,961 to 925,923 _RS04405 ABZR87_RS04410: ABZR87_RS04410 - chromate transporter, at 925,952 to 927,124 _RS04410 Position (kb) 924 925 926Strain fitness (log2 ratio) -2 -1 0 1 2at 924.076 kb on + strand, within ABZR87_RS04400at 924.076 kb on + strand, within ABZR87_RS04400at 924.076 kb on + strand, within ABZR87_RS04400at 924.076 kb on + strand, within ABZR87_RS04400at 924.076 kb on + strand, within ABZR87_RS04400at 924.076 kb on + strand, within ABZR87_RS04400at 924.077 kb on - strand, within ABZR87_RS04400at 924.077 kb on - strand, within ABZR87_RS04400at 924.077 kb on - strand, within ABZR87_RS04400at 924.077 kb on - strand, within ABZR87_RS04400at 924.213 kb on + strand, within ABZR87_RS04400at 924.214 kb on + strand, within ABZR87_RS04400at 924.215 kb on - strand, within ABZR87_RS04400at 924.246 kb on + strand, within ABZR87_RS04400at 924.454 kb on + strand, within ABZR87_RS04400at 924.455 kb on - strand, within ABZR87_RS04400at 924.619 kb on + strand, within ABZR87_RS04400at 924.619 kb on + strand, within ABZR87_RS04400at 924.620 kb on - strand, within ABZR87_RS04400at 924.631 kb on + strand, within ABZR87_RS04400at 924.658 kb on + strand, within ABZR87_RS04400at 924.658 kb on + strand, within ABZR87_RS04400at 924.658 kb on + strand, within ABZR87_RS04400at 924.658 kb on + strand, within ABZR87_RS04400at 924.658 kb on + strand, within ABZR87_RS04400at 924.658 kb on + strand, within ABZR87_RS04400at 924.658 kb on + strand, within ABZR87_RS04400at 924.667 kb on + strand, within ABZR87_RS04400at 924.667 kb on + strand, within ABZR87_RS04400at 924.668 kb on - strand, within ABZR87_RS04400at 924.668 kb on - strand, within ABZR87_RS04400at 924.733 kb on + strand, within ABZR87_RS04400at 924.733 kb on + strand, within ABZR87_RS04400at 924.733 kb on + strand, within ABZR87_RS04400at 924.733 kb on + strand, within ABZR87_RS04400at 924.734 kb on - strand, within ABZR87_RS04400at 924.734 kb on - strand, within ABZR87_RS04400at 924.734 kb on - strand, within ABZR87_RS04400at 924.734 kb on - strand, within ABZR87_RS04400at 924.736 kb on + strand, within ABZR87_RS04400at 924.736 kb on + strand, within ABZR87_RS04400at 924.761 kb on - strand, within ABZR87_RS04400at 924.790 kb on + strand, within ABZR87_RS04400at 924.790 kb on + strand, within ABZR87_RS04400at 924.791 kb on - strand, within ABZR87_RS04400at 924.791 kb on - strand, within ABZR87_RS04400at 924.791 kb on - strand, within ABZR87_RS04400at 924.791 kb on - strand, within ABZR87_RS04400at 924.791 kb on - strand, within ABZR87_RS04400at 924.791 kb on - strand, within ABZR87_RS04400at 924.819 kb on + strandat 924.909 kb on + strandat 924.909 kb on + strandat 924.909 kb on + strandat 924.909 kb on + strandat 924.910 kb on - strandat 924.949 kb on + strandat 924.950 kb on - strandat 924.950 kb on - strandat 925.244 kb on - strand, within ABZR87_RS04405at 925.342 kb on + strand, within ABZR87_RS04405at 925.498 kb on + strand, within ABZR87_RS04405at 925.498 kb on + strand, within ABZR87_RS04405at 925.498 kb on + strand, within ABZR87_RS04405at 925.498 kb on + strand, within ABZR87_RS04405at 925.499 kb on - strand, within ABZR87_RS04405at 925.499 kb on - strand, within ABZR87_RS04405at 925.499 kb on - strand, within ABZR87_RS04405at 925.891 kb on + strandat 925.891 kb on + strandat 925.891 kb on + strandat 925.891 kb on + strandat 925.891 kb on + strandat 925.891 kb on + strandat 925.891 kb on + strandat 925.891 kb on + strandat 925.891 kb on + strandat 925.892 kb on - strandat 925.892 kb on - strandat 925.892 kb on - strandat 925.892 kb on - strandat 925.892 kb on - strandat 925.892 kb on - strandat 925.892 kb on - strandat 925.892 kb on - strandat 925.892 kb on - strandat 925.892 kb on - strandat 925.945 kb on + strandat 925.945 kb on + strandat 925.945 kb on + strandat 925.946 kb on - strandat 925.980 kb on - strandat 925.980 kb on - strandat 925.980 kb on - strandat 925.980 kb on - strandat 926.003 kb on + strandat 926.003 kb on + strandat 926.004 kb on - strandat 926.004 kb on - strandat 926.057 kb on + strandat 926.171 kb on + strand, within ABZR87_RS04410at 926.171 kb on + strand, within ABZR87_RS04410at 926.171 kb on + strand, within ABZR87_RS04410at 926.171 kb on + strand, within ABZR87_RS04410at 926.172 kb on - strand, within ABZR87_RS04410at 926.172 kb on - strand, within ABZR87_RS04410at 926.172 kb on - strand, within ABZR87_RS04410at 926.180 kb on + strand, within ABZR87_RS04410at 926.180 kb on + strand, within ABZR87_RS04410at 926.181 kb on - strand, within ABZR87_RS04410at 926.270 kb on + strand, within ABZR87_RS04410at 926.270 kb on + strand, within ABZR87_RS04410at 926.270 kb on + strand, within ABZR87_RS04410at 926.270 kb on + strand, within ABZR87_RS04410at 926.270 kb on + strand, within ABZR87_RS04410at 926.271 kb on - strand, within ABZR87_RS04410at 926.271 kb on - strand, within ABZR87_RS04410at 926.271 kb on - strand, within ABZR87_RS04410at 926.271 kb on - strand, within ABZR87_RS04410at 926.271 kb on - strand, within ABZR87_RS04410at 926.271 kb on - strand, within ABZR87_RS04410at 926.273 kb on - strand, within ABZR87_RS04410at 926.273 kb on - strand, within ABZR87_RS04410at 926.312 kb on + strand, within ABZR87_RS04410at 926.312 kb on + strand, within ABZR87_RS04410at 926.312 kb on + strand, within ABZR87_RS04410at 926.408 kb on + strand, within ABZR87_RS04410at 926.408 kb on + strand, within ABZR87_RS04410at 926.408 kb on + strand, within ABZR87_RS04410at 926.408 kb on + strand, within ABZR87_RS04410at 926.409 kb on - strand, within ABZR87_RS04410at 926.409 kb on - strand, within ABZR87_RS04410at 926.409 kb on - strand, within ABZR87_RS04410at 926.409 kb on - strand, within ABZR87_RS04410at 926.675 kb on + strand, within ABZR87_RS04410at 926.675 kb on + strand, within ABZR87_RS04410at 926.790 kb on - strand, within ABZR87_RS04410at 926.849 kb on + strand, within ABZR87_RS04410at 926.849 kb on + strand, within ABZR87_RS04410at 926.849 kb on + strand, within ABZR87_RS04410at 926.850 kb on - strand, within ABZR87_RS04410at 926.850 kb on - strand, within ABZR87_RS04410at 926.850 kb on - strand, within ABZR87_RS04410at 926.876 kb on + strand, within ABZR87_RS04410at 926.877 kb on - strand, within ABZR87_RS04410at 926.877 kb on - strand, within ABZR87_RS04410at 926.877 kb on - strand, within ABZR87_RS04410at 926.889 kb on - strand, within ABZR87_RS04410at 926.889 kb on - strand, within ABZR87_RS04410

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 9; outgrowth in LB
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924,076 + ABZR87_RS04400 0.21 +0.8
924,076 + ABZR87_RS04400 0.21 -0.6
924,076 + ABZR87_RS04400 0.21 -1.2
924,076 + ABZR87_RS04400 0.21 -0.1
924,076 + ABZR87_RS04400 0.21 -0.8
924,076 + ABZR87_RS04400 0.21 +1.7
924,077 - ABZR87_RS04400 0.21 -1.4
924,077 - ABZR87_RS04400 0.21 -0.6
924,077 - ABZR87_RS04400 0.21 -1.0
924,077 - ABZR87_RS04400 0.21 +0.4
924,213 + ABZR87_RS04400 0.34 +1.4
924,214 + ABZR87_RS04400 0.34 +0.6
924,215 - ABZR87_RS04400 0.34 +0.3
924,246 + ABZR87_RS04400 0.37 +0.8
924,454 + ABZR87_RS04400 0.57 +0.3
924,455 - ABZR87_RS04400 0.57 -1.7
924,619 + ABZR87_RS04400 0.73 +1.3
924,619 + ABZR87_RS04400 0.73 -1.2
924,620 - ABZR87_RS04400 0.73 -0.3
924,631 + ABZR87_RS04400 0.74 +0.4
924,658 + ABZR87_RS04400 0.76 +0.1
924,658 + ABZR87_RS04400 0.76 +1.2
924,658 + ABZR87_RS04400 0.76 -1.1
924,658 + ABZR87_RS04400 0.76 -0.3
924,658 + ABZR87_RS04400 0.76 +0.3
924,658 + ABZR87_RS04400 0.76 +0.8
924,658 + ABZR87_RS04400 0.76 -0.1
924,667 + ABZR87_RS04400 0.77 +0.5
924,667 + ABZR87_RS04400 0.77 +2.4
924,668 - ABZR87_RS04400 0.77 -0.2
924,668 - ABZR87_RS04400 0.77 -1.4
924,733 + ABZR87_RS04400 0.84 -0.4
924,733 + ABZR87_RS04400 0.84 -1.0
924,733 + ABZR87_RS04400 0.84 +0.5
924,733 + ABZR87_RS04400 0.84 +1.0
924,734 - ABZR87_RS04400 0.84 -0.1
924,734 - ABZR87_RS04400 0.84 -0.1
924,734 - ABZR87_RS04400 0.84 -0.3
924,734 - ABZR87_RS04400 0.84 -1.3
924,736 + ABZR87_RS04400 0.84 +0.2
924,736 + ABZR87_RS04400 0.84 +0.6
924,761 - ABZR87_RS04400 0.86 -0.3
924,790 + ABZR87_RS04400 0.89 -0.8
924,790 + ABZR87_RS04400 0.89 +0.7
924,791 - ABZR87_RS04400 0.89 -0.1
924,791 - ABZR87_RS04400 0.89 -0.4
924,791 - ABZR87_RS04400 0.89 +0.0
924,791 - ABZR87_RS04400 0.89 -0.8
924,791 - ABZR87_RS04400 0.89 +1.4
924,791 - ABZR87_RS04400 0.89 -0.0
924,819 + +0.1
924,909 + -0.4
924,909 + -0.6
924,909 + -2.2
924,909 + +0.3
924,910 - +0.0
924,949 + -0.8
924,950 - +0.5
924,950 - -1.6
925,244 - ABZR87_RS04405 0.29 +0.7
925,342 + ABZR87_RS04405 0.40 -0.1
925,498 + ABZR87_RS04405 0.56 +0.5
925,498 + ABZR87_RS04405 0.56 +1.1
925,498 + ABZR87_RS04405 0.56 -0.2
925,498 + ABZR87_RS04405 0.56 -0.3
925,499 - ABZR87_RS04405 0.56 +0.2
925,499 - ABZR87_RS04405 0.56 +0.1
925,499 - ABZR87_RS04405 0.56 +1.1
925,891 + -0.2
925,891 + +1.2
925,891 + -0.6
925,891 + -2.0
925,891 + -1.0
925,891 + +0.2
925,891 + +1.5
925,891 + +0.9
925,891 + +0.1
925,892 - +0.6
925,892 - +1.5
925,892 - +0.4
925,892 - +0.5
925,892 - -2.1
925,892 - +1.1
925,892 - -0.1
925,892 - -0.5
925,892 - +1.9
925,892 - -0.9
925,945 + -0.1
925,945 + -0.5
925,945 + -1.8
925,946 - -0.3
925,980 - -0.4
925,980 - -0.5
925,980 - -1.6
925,980 - +0.4
926,003 + +0.1
926,003 + +0.4
926,004 - -1.5
926,004 - -0.4
926,057 + +0.4
926,171 + ABZR87_RS04410 0.19 +1.1
926,171 + ABZR87_RS04410 0.19 +0.5
926,171 + ABZR87_RS04410 0.19 +0.6
926,171 + ABZR87_RS04410 0.19 -0.7
926,172 - ABZR87_RS04410 0.19 -1.2
926,172 - ABZR87_RS04410 0.19 +1.6
926,172 - ABZR87_RS04410 0.19 -1.5
926,180 + ABZR87_RS04410 0.19 -1.3
926,180 + ABZR87_RS04410 0.19 +0.3
926,181 - ABZR87_RS04410 0.20 +1.9
926,270 + ABZR87_RS04410 0.27 -0.8
926,270 + ABZR87_RS04410 0.27 -0.6
926,270 + ABZR87_RS04410 0.27 +1.6
926,270 + ABZR87_RS04410 0.27 +0.6
926,270 + ABZR87_RS04410 0.27 +0.7
926,271 - ABZR87_RS04410 0.27 -1.4
926,271 - ABZR87_RS04410 0.27 +0.3
926,271 - ABZR87_RS04410 0.27 +0.2
926,271 - ABZR87_RS04410 0.27 -0.9
926,271 - ABZR87_RS04410 0.27 +0.9
926,271 - ABZR87_RS04410 0.27 -1.6
926,273 - ABZR87_RS04410 0.27 +0.1
926,273 - ABZR87_RS04410 0.27 +0.2
926,312 + ABZR87_RS04410 0.31 +1.3
926,312 + ABZR87_RS04410 0.31 -2.2
926,312 + ABZR87_RS04410 0.31 -1.2
926,408 + ABZR87_RS04410 0.39 -1.1
926,408 + ABZR87_RS04410 0.39 -0.9
926,408 + ABZR87_RS04410 0.39 +1.3
926,408 + ABZR87_RS04410 0.39 -0.3
926,409 - ABZR87_RS04410 0.39 -0.5
926,409 - ABZR87_RS04410 0.39 -1.4
926,409 - ABZR87_RS04410 0.39 -0.7
926,409 - ABZR87_RS04410 0.39 +0.4
926,675 + ABZR87_RS04410 0.62 -0.9
926,675 + ABZR87_RS04410 0.62 +1.1
926,790 - ABZR87_RS04410 0.71 -0.7
926,849 + ABZR87_RS04410 0.76 +2.1
926,849 + ABZR87_RS04410 0.76 +0.2
926,849 + ABZR87_RS04410 0.76 -0.8
926,850 - ABZR87_RS04410 0.77 -0.3
926,850 - ABZR87_RS04410 0.77 -0.0
926,850 - ABZR87_RS04410 0.77 +1.2
926,876 + ABZR87_RS04410 0.79 +0.5
926,877 - ABZR87_RS04410 0.79 -0.6
926,877 - ABZR87_RS04410 0.79 +0.8
926,877 - ABZR87_RS04410 0.79 -0.4
926,889 - ABZR87_RS04410 0.80 +0.5
926,889 - ABZR87_RS04410 0.80 +0.8

Or see this region's nucleotide sequence