Experiment: rhizosphere sample 9; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04335 and ABZR87_RS04340 are separated by 44 nucleotides ABZR87_RS04340 and ABZR87_RS04345 are separated by 14 nucleotides ABZR87_RS04345 and ABZR87_RS04350 are separated by 15 nucleotides
ABZR87_RS04335: ABZR87_RS04335 - septum site-determining protein MinC, at 905,142 to 905,927
_RS04335
ABZR87_RS04340: ABZR87_RS04340 - septum site-determining protein MinD, at 905,972 to 906,790
_RS04340
ABZR87_RS04345: ABZR87_RS04345 - cell division topological specificity factor MinE, at 906,805 to 907,059
_RS04345
ABZR87_RS04350: ABZR87_RS04350 - citrate synthase family protein, at 907,075 to 908,307
_RS04350
Position (kb) 905
906
907 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 905.053 kb on + strand at 905.109 kb on + strand at 905.110 kb on - strand at 905.110 kb on - strand at 905.110 kb on - strand at 905.110 kb on - strand at 905.110 kb on - strand at 905.110 kb on - strand at 905.110 kb on - strand at 905.141 kb on + strand at 905.141 kb on + strand at 905.141 kb on + strand at 905.142 kb on - strand at 905.142 kb on - strand at 905.142 kb on - strand at 905.142 kb on - strand at 905.640 kb on + strand, within ABZR87_RS04335 at 905.640 kb on + strand, within ABZR87_RS04335 at 905.640 kb on + strand, within ABZR87_RS04335 at 905.640 kb on + strand, within ABZR87_RS04335 at 905.640 kb on + strand, within ABZR87_RS04335 at 905.640 kb on + strand, within ABZR87_RS04335 at 905.640 kb on + strand, within ABZR87_RS04335 at 905.641 kb on - strand, within ABZR87_RS04335 at 905.641 kb on - strand, within ABZR87_RS04335 at 905.641 kb on - strand, within ABZR87_RS04335 at 905.641 kb on - strand, within ABZR87_RS04335 at 905.641 kb on - strand, within ABZR87_RS04335 at 905.712 kb on + strand, within ABZR87_RS04335 at 905.712 kb on + strand, within ABZR87_RS04335 at 905.712 kb on + strand, within ABZR87_RS04335 at 905.712 kb on + strand, within ABZR87_RS04335 at 905.712 kb on + strand, within ABZR87_RS04335 at 905.712 kb on + strand, within ABZR87_RS04335 at 905.712 kb on + strand, within ABZR87_RS04335 at 905.712 kb on + strand, within ABZR87_RS04335 at 905.712 kb on + strand, within ABZR87_RS04335 at 905.712 kb on + strand, within ABZR87_RS04335 at 905.713 kb on - strand, within ABZR87_RS04335 at 905.713 kb on - strand, within ABZR87_RS04335 at 905.713 kb on - strand, within ABZR87_RS04335 at 905.713 kb on - strand, within ABZR87_RS04335 at 905.713 kb on - strand, within ABZR87_RS04335 at 905.718 kb on + strand, within ABZR87_RS04335 at 905.718 kb on + strand, within ABZR87_RS04335 at 905.718 kb on + strand, within ABZR87_RS04335 at 905.718 kb on + strand, within ABZR87_RS04335 at 905.718 kb on + strand, within ABZR87_RS04335 at 905.718 kb on + strand, within ABZR87_RS04335 at 905.718 kb on + strand, within ABZR87_RS04335 at 905.719 kb on - strand, within ABZR87_RS04335 at 905.719 kb on - strand, within ABZR87_RS04335 at 905.823 kb on + strand, within ABZR87_RS04335 at 905.824 kb on - strand, within ABZR87_RS04335 at 905.824 kb on - strand, within ABZR87_RS04335 at 905.824 kb on - strand, within ABZR87_RS04335 at 905.857 kb on - strand at 905.857 kb on - strand at 905.951 kb on + strand at 905.952 kb on - strand at 905.956 kb on + strand at 905.956 kb on + strand at 905.957 kb on - strand at 905.964 kb on + strand at 905.965 kb on - strand at 905.988 kb on + strand at 905.989 kb on - strand at 905.989 kb on - strand at 905.989 kb on - strand at 906.143 kb on + strand, within ABZR87_RS04340 at 906.143 kb on + strand, within ABZR87_RS04340 at 906.143 kb on + strand, within ABZR87_RS04340 at 906.143 kb on + strand, within ABZR87_RS04340 at 906.143 kb on + strand, within ABZR87_RS04340 at 906.143 kb on + strand, within ABZR87_RS04340 at 906.144 kb on - strand, within ABZR87_RS04340 at 906.144 kb on - strand, within ABZR87_RS04340 at 906.144 kb on - strand, within ABZR87_RS04340 at 906.317 kb on + strand, within ABZR87_RS04340 at 906.317 kb on + strand, within ABZR87_RS04340 at 906.317 kb on + strand, within ABZR87_RS04340 at 906.317 kb on + strand, within ABZR87_RS04340 at 906.318 kb on - strand, within ABZR87_RS04340 at 906.318 kb on - strand, within ABZR87_RS04340 at 906.371 kb on + strand, within ABZR87_RS04340 at 906.371 kb on + strand, within ABZR87_RS04340 at 906.371 kb on + strand, within ABZR87_RS04340 at 906.371 kb on + strand, within ABZR87_RS04340 at 906.371 kb on + strand, within ABZR87_RS04340 at 906.371 kb on + strand, within ABZR87_RS04340 at 906.372 kb on - strand, within ABZR87_RS04340 at 906.372 kb on - strand, within ABZR87_RS04340 at 906.518 kb on + strand, within ABZR87_RS04340 at 906.518 kb on + strand, within ABZR87_RS04340 at 906.518 kb on + strand, within ABZR87_RS04340 at 906.518 kb on + strand, within ABZR87_RS04340 at 906.518 kb on + strand, within ABZR87_RS04340 at 906.518 kb on + strand, within ABZR87_RS04340 at 906.518 kb on + strand, within ABZR87_RS04340 at 906.519 kb on - strand, within ABZR87_RS04340 at 906.519 kb on - strand, within ABZR87_RS04340 at 906.519 kb on - strand, within ABZR87_RS04340 at 906.686 kb on + strand, within ABZR87_RS04340 at 906.686 kb on + strand, within ABZR87_RS04340 at 906.687 kb on - strand, within ABZR87_RS04340 at 906.734 kb on + strand at 906.735 kb on - strand at 906.743 kb on + strand at 906.743 kb on + strand at 906.743 kb on + strand at 906.743 kb on + strand at 906.744 kb on - strand at 906.744 kb on - strand at 906.744 kb on - strand at 906.744 kb on - strand at 906.788 kb on + strand at 907.136 kb on + strand at 907.136 kb on + strand at 907.137 kb on - strand at 907.137 kb on - strand at 907.137 kb on - strand at 907.137 kb on - strand at 907.137 kb on - strand at 907.409 kb on + strand, within ABZR87_RS04350 at 907.410 kb on - strand, within ABZR87_RS04350 at 907.410 kb on - strand, within ABZR87_RS04350 at 907.766 kb on - strand, within ABZR87_RS04350 at 907.766 kb on - strand, within ABZR87_RS04350
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 9; outgrowth in LB remove 905,053 + -1.5 905,109 + -0.1 905,110 - -0.3 905,110 - -2.3 905,110 - -1.0 905,110 - -0.3 905,110 - -0.2 905,110 - -1.0 905,110 - -0.4 905,141 + -0.2 905,141 + +1.1 905,141 + -1.4 905,142 - +0.1 905,142 - +1.3 905,142 - -0.9 905,142 - -2.0 905,640 + ABZR87_RS04335 0.63 -1.2 905,640 + ABZR87_RS04335 0.63 -0.8 905,640 + ABZR87_RS04335 0.63 -1.5 905,640 + ABZR87_RS04335 0.63 -0.6 905,640 + ABZR87_RS04335 0.63 -1.2 905,640 + ABZR87_RS04335 0.63 +0.6 905,640 + ABZR87_RS04335 0.63 -1.1 905,641 - ABZR87_RS04335 0.63 +0.0 905,641 - ABZR87_RS04335 0.63 -0.4 905,641 - ABZR87_RS04335 0.63 +0.4 905,641 - ABZR87_RS04335 0.63 -0.3 905,641 - ABZR87_RS04335 0.63 -0.8 905,712 + ABZR87_RS04335 0.73 -0.6 905,712 + ABZR87_RS04335 0.73 +1.7 905,712 + ABZR87_RS04335 0.73 -2.1 905,712 + ABZR87_RS04335 0.73 -1.2 905,712 + ABZR87_RS04335 0.73 -2.3 905,712 + ABZR87_RS04335 0.73 -2.4 905,712 + ABZR87_RS04335 0.73 -0.9 905,712 + ABZR87_RS04335 0.73 +0.4 905,712 + ABZR87_RS04335 0.73 -1.9 905,712 + ABZR87_RS04335 0.73 +0.8 905,713 - ABZR87_RS04335 0.73 +0.5 905,713 - ABZR87_RS04335 0.73 +2.4 905,713 - ABZR87_RS04335 0.73 -1.9 905,713 - ABZR87_RS04335 0.73 -1.2 905,713 - ABZR87_RS04335 0.73 +1.0 905,718 + ABZR87_RS04335 0.73 -1.8 905,718 + ABZR87_RS04335 0.73 +0.2 905,718 + ABZR87_RS04335 0.73 +2.5 905,718 + ABZR87_RS04335 0.73 -0.9 905,718 + ABZR87_RS04335 0.73 -3.0 905,718 + ABZR87_RS04335 0.73 -0.0 905,718 + ABZR87_RS04335 0.73 -0.9 905,719 - ABZR87_RS04335 0.73 +1.1 905,719 - ABZR87_RS04335 0.73 -1.3 905,823 + ABZR87_RS04335 0.87 +0.9 905,824 - ABZR87_RS04335 0.87 -1.3 905,824 - ABZR87_RS04335 0.87 -1.3 905,824 - ABZR87_RS04335 0.87 +0.1 905,857 - -1.2 905,857 - -0.6 905,951 + -1.0 905,952 - +1.1 905,956 + -0.4 905,956 + +0.9 905,957 - -0.4 905,964 + -0.2 905,965 - +0.2 905,988 + +0.7 905,989 - +1.0 905,989 - -0.6 905,989 - -1.8 906,143 + ABZR87_RS04340 0.21 -1.2 906,143 + ABZR87_RS04340 0.21 -0.7 906,143 + ABZR87_RS04340 0.21 +0.5 906,143 + ABZR87_RS04340 0.21 +0.5 906,143 + ABZR87_RS04340 0.21 -1.2 906,143 + ABZR87_RS04340 0.21 -1.9 906,144 - ABZR87_RS04340 0.21 -1.2 906,144 - ABZR87_RS04340 0.21 -2.0 906,144 - ABZR87_RS04340 0.21 -0.1 906,317 + ABZR87_RS04340 0.42 -2.2 906,317 + ABZR87_RS04340 0.42 +1.0 906,317 + ABZR87_RS04340 0.42 +0.7 906,317 + ABZR87_RS04340 0.42 -0.2 906,318 - ABZR87_RS04340 0.42 -0.9 906,318 - ABZR87_RS04340 0.42 +0.4 906,371 + ABZR87_RS04340 0.49 -1.3 906,371 + ABZR87_RS04340 0.49 -1.8 906,371 + ABZR87_RS04340 0.49 -0.2 906,371 + ABZR87_RS04340 0.49 +0.0 906,371 + ABZR87_RS04340 0.49 +0.5 906,371 + ABZR87_RS04340 0.49 -1.0 906,372 - ABZR87_RS04340 0.49 +0.1 906,372 - ABZR87_RS04340 0.49 +0.4 906,518 + ABZR87_RS04340 0.67 -1.0 906,518 + ABZR87_RS04340 0.67 +0.7 906,518 + ABZR87_RS04340 0.67 +0.2 906,518 + ABZR87_RS04340 0.67 -1.4 906,518 + ABZR87_RS04340 0.67 -0.3 906,518 + ABZR87_RS04340 0.67 +0.7 906,518 + ABZR87_RS04340 0.67 +0.4 906,519 - ABZR87_RS04340 0.67 +2.9 906,519 - ABZR87_RS04340 0.67 -1.5 906,519 - ABZR87_RS04340 0.67 -1.5 906,686 + ABZR87_RS04340 0.87 +1.3 906,686 + ABZR87_RS04340 0.87 -0.0 906,687 - ABZR87_RS04340 0.87 -0.7 906,734 + +0.1 906,735 - -2.2 906,743 + +0.6 906,743 + +0.4 906,743 + +0.9 906,743 + -1.4 906,744 - -0.0 906,744 - -2.2 906,744 - +0.9 906,744 - -0.0 906,788 + +0.8 907,136 + +1.4 907,136 + +0.2 907,137 - -2.1 907,137 - +1.2 907,137 - -0.6 907,137 - +0.3 907,137 - -0.2 907,409 + ABZR87_RS04350 0.27 -0.0 907,410 - ABZR87_RS04350 0.27 +0.7 907,410 - ABZR87_RS04350 0.27 +0.2 907,766 - ABZR87_RS04350 0.56 -0.9 907,766 - ABZR87_RS04350 0.56 -0.1
Or see this region's nucleotide sequence