Experiment: rhizosphere sample 9; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04175 and ABZR87_RS04180 overlap by 11 nucleotides ABZR87_RS04180 and ABZR87_RS04185 are separated by 22 nucleotides ABZR87_RS04185 and ABZR87_RS04190 are separated by 119 nucleotides ABZR87_RS04190 and ABZR87_RS04195 are separated by 233 nucleotides
ABZR87_RS04175: ABZR87_RS04175 - cupin domain-containing protein, at 874,251 to 874,628
_RS04175
ABZR87_RS04180: ABZR87_RS04180 - TSUP family transporter, at 874,618 to 875,376
_RS04180
ABZR87_RS04185: ABZR87_RS04185 - hypothetical protein, at 875,399 to 875,836
_RS04185
ABZR87_RS04190: ABZR87_RS04190 - hypothetical protein, at 875,956 to 876,207
_RS04190
ABZR87_RS04195: ABZR87_RS04195 - branched-chain amino acid ABC transporter permease, at 876,441 to 877,427
_RS04195
Position (kb) 875
876 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 874.423 kb on - strand, within ABZR87_RS04175 at 874.423 kb on - strand, within ABZR87_RS04175 at 874.637 kb on + strand at 874.637 kb on + strand at 874.638 kb on - strand at 874.638 kb on - strand at 874.638 kb on - strand at 874.871 kb on + strand, within ABZR87_RS04180 at 874.937 kb on + strand, within ABZR87_RS04180 at 874.938 kb on - strand, within ABZR87_RS04180 at 875.097 kb on + strand, within ABZR87_RS04180 at 875.097 kb on + strand, within ABZR87_RS04180 at 875.097 kb on + strand, within ABZR87_RS04180 at 875.098 kb on - strand, within ABZR87_RS04180 at 875.171 kb on + strand, within ABZR87_RS04180 at 875.172 kb on - strand, within ABZR87_RS04180 at 875.273 kb on + strand, within ABZR87_RS04180 at 875.400 kb on + strand at 875.400 kb on + strand at 875.522 kb on + strand, within ABZR87_RS04185 at 875.522 kb on + strand, within ABZR87_RS04185 at 875.523 kb on - strand, within ABZR87_RS04185 at 875.523 kb on - strand, within ABZR87_RS04185 at 875.523 kb on - strand, within ABZR87_RS04185 at 875.523 kb on - strand, within ABZR87_RS04185 at 875.541 kb on + strand, within ABZR87_RS04185 at 875.542 kb on - strand, within ABZR87_RS04185 at 875.542 kb on - strand, within ABZR87_RS04185 at 875.734 kb on + strand, within ABZR87_RS04185 at 875.734 kb on + strand, within ABZR87_RS04185 at 875.735 kb on - strand, within ABZR87_RS04185 at 875.879 kb on + strand at 876.022 kb on + strand, within ABZR87_RS04190 at 876.022 kb on + strand, within ABZR87_RS04190 at 876.023 kb on - strand, within ABZR87_RS04190 at 876.205 kb on + strand at 876.205 kb on + strand at 876.245 kb on + strand at 876.245 kb on + strand at 876.245 kb on + strand at 876.246 kb on - strand at 876.246 kb on - strand at 876.246 kb on - strand at 876.246 kb on - strand at 876.246 kb on - strand at 876.246 kb on - strand at 876.263 kb on + strand at 876.263 kb on + strand at 876.263 kb on + strand at 876.263 kb on + strand at 876.263 kb on + strand at 876.264 kb on - strand at 876.264 kb on - strand at 876.305 kb on + strand at 876.305 kb on + strand at 876.305 kb on + strand at 876.306 kb on - strand at 876.334 kb on + strand at 876.334 kb on + strand at 876.335 kb on - strand at 876.360 kb on + strand at 876.361 kb on - strand at 876.361 kb on - strand at 876.361 kb on - strand at 876.557 kb on + strand, within ABZR87_RS04195 at 876.558 kb on - strand, within ABZR87_RS04195 at 876.829 kb on + strand, within ABZR87_RS04195 at 876.830 kb on - strand, within ABZR87_RS04195
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 9; outgrowth in LB remove 874,423 - ABZR87_RS04175 0.46 -0.7 874,423 - ABZR87_RS04175 0.46 -0.5 874,637 + -0.0 874,637 + -0.3 874,638 - +0.3 874,638 - -0.7 874,638 - -2.8 874,871 + ABZR87_RS04180 0.33 +0.0 874,937 + ABZR87_RS04180 0.42 +0.9 874,938 - ABZR87_RS04180 0.42 -0.9 875,097 + ABZR87_RS04180 0.63 -0.7 875,097 + ABZR87_RS04180 0.63 -0.4 875,097 + ABZR87_RS04180 0.63 +1.6 875,098 - ABZR87_RS04180 0.63 +0.5 875,171 + ABZR87_RS04180 0.73 -0.1 875,172 - ABZR87_RS04180 0.73 +0.2 875,273 + ABZR87_RS04180 0.86 +1.0 875,400 + -0.1 875,400 + -1.1 875,522 + ABZR87_RS04185 0.28 -0.8 875,522 + ABZR87_RS04185 0.28 +0.6 875,523 - ABZR87_RS04185 0.28 -0.1 875,523 - ABZR87_RS04185 0.28 +0.2 875,523 - ABZR87_RS04185 0.28 -0.4 875,523 - ABZR87_RS04185 0.28 +1.5 875,541 + ABZR87_RS04185 0.32 -2.7 875,542 - ABZR87_RS04185 0.33 -1.9 875,542 - ABZR87_RS04185 0.33 +0.1 875,734 + ABZR87_RS04185 0.76 -0.1 875,734 + ABZR87_RS04185 0.76 -0.9 875,735 - ABZR87_RS04185 0.77 +0.9 875,879 + +0.5 876,022 + ABZR87_RS04190 0.26 -2.2 876,022 + ABZR87_RS04190 0.26 +1.9 876,023 - ABZR87_RS04190 0.27 +0.3 876,205 + +0.0 876,205 + -0.3 876,245 + +0.5 876,245 + -0.2 876,245 + -1.1 876,246 - -1.1 876,246 - -1.8 876,246 - -0.8 876,246 - +0.9 876,246 - -0.1 876,246 - -1.3 876,263 + -1.0 876,263 + +2.2 876,263 + +1.2 876,263 + -1.7 876,263 + -1.2 876,264 - +0.1 876,264 - -0.9 876,305 + -1.8 876,305 + +2.5 876,305 + -0.7 876,306 - -1.7 876,334 + -2.3 876,334 + -0.4 876,335 - -0.5 876,360 + -1.6 876,361 - +0.2 876,361 - -1.1 876,361 - -1.1 876,557 + ABZR87_RS04195 0.12 -0.7 876,558 - ABZR87_RS04195 0.12 -0.8 876,829 + ABZR87_RS04195 0.39 -1.2 876,830 - ABZR87_RS04195 0.39 -0.5
Or see this region's nucleotide sequence