Experiment: rhizosphere sample 9; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03845 and ABZR87_RS03850 are separated by 94 nucleotides ABZR87_RS03850 and ABZR87_RS03855 overlap by 4 nucleotides ABZR87_RS03855 and ABZR87_RS03860 are separated by 343 nucleotides
ABZR87_RS03845: ABZR87_RS03845 - M20/M25/M40 family metallo-hydrolase, at 793,703 to 794,977
_RS03845
ABZR87_RS03850: ABZR87_RS03850 - ureidoglycolate lyase, at 795,072 to 795,599
_RS03850
ABZR87_RS03855: ABZR87_RS03855 - allantoicase, at 795,596 to 796,606
_RS03855
ABZR87_RS03860: ABZR87_RS03860 - C4-dicarboxylate transporter DctA, at 796,950 to 798,290
_RS03860
Position (kb) 795
796
797 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 794.628 kb on + strand, within ABZR87_RS03845 at 795.073 kb on + strand at 795.073 kb on + strand at 795.073 kb on + strand at 795.073 kb on + strand at 795.073 kb on + strand at 795.074 kb on - strand at 795.074 kb on - strand at 795.074 kb on - strand at 795.074 kb on - strand at 795.074 kb on - strand at 795.074 kb on - strand at 795.226 kb on + strand, within ABZR87_RS03850 at 795.226 kb on + strand, within ABZR87_RS03850 at 795.226 kb on + strand, within ABZR87_RS03850 at 795.227 kb on - strand, within ABZR87_RS03850 at 795.310 kb on + strand, within ABZR87_RS03850 at 795.310 kb on + strand, within ABZR87_RS03850 at 795.310 kb on + strand, within ABZR87_RS03850 at 795.699 kb on + strand, within ABZR87_RS03855 at 795.699 kb on + strand, within ABZR87_RS03855 at 795.699 kb on + strand, within ABZR87_RS03855 at 795.699 kb on + strand, within ABZR87_RS03855 at 795.700 kb on - strand, within ABZR87_RS03855 at 795.700 kb on - strand, within ABZR87_RS03855 at 795.700 kb on - strand, within ABZR87_RS03855 at 795.700 kb on - strand, within ABZR87_RS03855 at 795.700 kb on - strand, within ABZR87_RS03855 at 795.700 kb on - strand, within ABZR87_RS03855 at 795.700 kb on - strand, within ABZR87_RS03855 at 795.700 kb on - strand, within ABZR87_RS03855 at 795.702 kb on + strand, within ABZR87_RS03855 at 795.702 kb on + strand, within ABZR87_RS03855 at 795.702 kb on + strand, within ABZR87_RS03855 at 795.702 kb on + strand, within ABZR87_RS03855 at 795.702 kb on + strand, within ABZR87_RS03855 at 795.703 kb on - strand, within ABZR87_RS03855 at 795.703 kb on - strand, within ABZR87_RS03855 at 795.703 kb on - strand, within ABZR87_RS03855 at 796.023 kb on + strand, within ABZR87_RS03855 at 796.023 kb on + strand, within ABZR87_RS03855 at 796.023 kb on + strand, within ABZR87_RS03855 at 796.023 kb on + strand, within ABZR87_RS03855 at 796.023 kb on + strand, within ABZR87_RS03855 at 796.024 kb on - strand, within ABZR87_RS03855 at 796.024 kb on - strand, within ABZR87_RS03855 at 796.024 kb on - strand, within ABZR87_RS03855 at 796.024 kb on - strand, within ABZR87_RS03855 at 796.024 kb on - strand, within ABZR87_RS03855 at 796.024 kb on - strand, within ABZR87_RS03855 at 796.024 kb on - strand, within ABZR87_RS03855 at 796.024 kb on - strand, within ABZR87_RS03855 at 796.101 kb on + strand, within ABZR87_RS03855 at 796.101 kb on + strand, within ABZR87_RS03855 at 796.102 kb on - strand, within ABZR87_RS03855 at 796.185 kb on + strand, within ABZR87_RS03855 at 796.185 kb on + strand, within ABZR87_RS03855 at 796.185 kb on + strand, within ABZR87_RS03855 at 796.185 kb on + strand, within ABZR87_RS03855 at 796.186 kb on - strand, within ABZR87_RS03855 at 796.186 kb on - strand, within ABZR87_RS03855 at 796.186 kb on - strand, within ABZR87_RS03855 at 796.186 kb on - strand, within ABZR87_RS03855 at 796.186 kb on - strand, within ABZR87_RS03855 at 796.269 kb on + strand, within ABZR87_RS03855 at 796.269 kb on + strand, within ABZR87_RS03855 at 796.270 kb on - strand, within ABZR87_RS03855 at 796.270 kb on - strand, within ABZR87_RS03855 at 796.380 kb on + strand, within ABZR87_RS03855 at 796.381 kb on - strand, within ABZR87_RS03855 at 796.381 kb on - strand, within ABZR87_RS03855 at 796.440 kb on + strand, within ABZR87_RS03855 at 796.440 kb on + strand, within ABZR87_RS03855 at 796.440 kb on + strand, within ABZR87_RS03855 at 796.440 kb on + strand, within ABZR87_RS03855 at 796.441 kb on - strand, within ABZR87_RS03855 at 796.441 kb on - strand, within ABZR87_RS03855 at 796.594 kb on + strand at 796.594 kb on + strand at 796.594 kb on + strand at 796.595 kb on - strand at 796.638 kb on + strand at 796.638 kb on + strand at 796.638 kb on + strand at 796.638 kb on + strand at 796.638 kb on + strand at 796.639 kb on - strand at 796.639 kb on - strand at 796.639 kb on - strand at 796.639 kb on - strand at 796.639 kb on - strand at 796.639 kb on - strand at 796.640 kb on + strand at 796.640 kb on + strand at 796.640 kb on + strand at 796.640 kb on + strand at 796.640 kb on + strand at 796.640 kb on + strand at 796.640 kb on + strand at 796.641 kb on - strand at 796.641 kb on - strand at 796.641 kb on - strand at 796.641 kb on - strand at 796.641 kb on - strand at 796.641 kb on - strand at 796.641 kb on - strand at 796.641 kb on - strand at 796.641 kb on - strand at 796.641 kb on - strand at 796.641 kb on - strand at 796.641 kb on - strand at 796.717 kb on + strand at 796.717 kb on + strand at 796.717 kb on + strand at 796.717 kb on + strand at 796.717 kb on + strand at 796.763 kb on + strand at 796.805 kb on + strand at 796.806 kb on - strand at 796.806 kb on - strand at 796.929 kb on + strand at 796.929 kb on + strand at 796.930 kb on - strand at 796.930 kb on - strand at 796.961 kb on + strand at 796.962 kb on - strand at 797.184 kb on + strand, within ABZR87_RS03860 at 797.185 kb on - strand, within ABZR87_RS03860 at 797.185 kb on - strand, within ABZR87_RS03860 at 797.185 kb on - strand, within ABZR87_RS03860 at 797.235 kb on + strand, within ABZR87_RS03860 at 797.235 kb on + strand, within ABZR87_RS03860 at 797.235 kb on + strand, within ABZR87_RS03860 at 797.235 kb on + strand, within ABZR87_RS03860 at 797.235 kb on + strand, within ABZR87_RS03860 at 797.235 kb on + strand, within ABZR87_RS03860 at 797.236 kb on - strand, within ABZR87_RS03860 at 797.236 kb on - strand, within ABZR87_RS03860 at 797.236 kb on - strand, within ABZR87_RS03860 at 797.236 kb on - strand, within ABZR87_RS03860 at 797.236 kb on - strand, within ABZR87_RS03860 at 797.304 kb on + strand, within ABZR87_RS03860 at 797.304 kb on + strand, within ABZR87_RS03860 at 797.304 kb on + strand, within ABZR87_RS03860 at 797.304 kb on + strand, within ABZR87_RS03860 at 797.304 kb on + strand, within ABZR87_RS03860 at 797.305 kb on - strand, within ABZR87_RS03860 at 797.305 kb on - strand, within ABZR87_RS03860 at 797.305 kb on - strand, within ABZR87_RS03860 at 797.305 kb on - strand, within ABZR87_RS03860 at 797.305 kb on - strand, within ABZR87_RS03860 at 797.372 kb on + strand, within ABZR87_RS03860 at 797.373 kb on - strand, within ABZR87_RS03860 at 797.373 kb on - strand, within ABZR87_RS03860 at 797.373 kb on - strand, within ABZR87_RS03860 at 797.586 kb on + strand, within ABZR87_RS03860 at 797.587 kb on - strand, within ABZR87_RS03860
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 9; outgrowth in LB remove 794,628 + ABZR87_RS03845 0.73 +1.0 795,073 + +0.3 795,073 + -2.3 795,073 + +0.3 795,073 + -0.2 795,073 + -1.7 795,074 - +0.4 795,074 - -0.1 795,074 - -0.9 795,074 - -0.1 795,074 - +0.5 795,074 - -0.4 795,226 + ABZR87_RS03850 0.29 -3.0 795,226 + ABZR87_RS03850 0.29 -1.0 795,226 + ABZR87_RS03850 0.29 -2.3 795,227 - ABZR87_RS03850 0.29 -1.0 795,310 + ABZR87_RS03850 0.45 -2.5 795,310 + ABZR87_RS03850 0.45 -1.9 795,310 + ABZR87_RS03850 0.45 -1.2 795,699 + ABZR87_RS03855 0.10 -0.0 795,699 + ABZR87_RS03855 0.10 +0.3 795,699 + ABZR87_RS03855 0.10 +0.7 795,699 + ABZR87_RS03855 0.10 -1.1 795,700 - ABZR87_RS03855 0.10 -0.1 795,700 - ABZR87_RS03855 0.10 -1.4 795,700 - ABZR87_RS03855 0.10 -1.0 795,700 - ABZR87_RS03855 0.10 +0.1 795,700 - ABZR87_RS03855 0.10 -2.7 795,700 - ABZR87_RS03855 0.10 +0.3 795,700 - ABZR87_RS03855 0.10 -0.5 795,700 - ABZR87_RS03855 0.10 -0.8 795,702 + ABZR87_RS03855 0.10 +0.3 795,702 + ABZR87_RS03855 0.10 -0.9 795,702 + ABZR87_RS03855 0.10 +0.6 795,702 + ABZR87_RS03855 0.10 -0.4 795,702 + ABZR87_RS03855 0.10 -2.2 795,703 - ABZR87_RS03855 0.11 -1.1 795,703 - ABZR87_RS03855 0.11 -0.4 795,703 - ABZR87_RS03855 0.11 +0.2 796,023 + ABZR87_RS03855 0.42 -1.5 796,023 + ABZR87_RS03855 0.42 -0.7 796,023 + ABZR87_RS03855 0.42 -1.2 796,023 + ABZR87_RS03855 0.42 -1.2 796,023 + ABZR87_RS03855 0.42 -0.7 796,024 - ABZR87_RS03855 0.42 -0.3 796,024 - ABZR87_RS03855 0.42 -1.6 796,024 - ABZR87_RS03855 0.42 +0.6 796,024 - ABZR87_RS03855 0.42 -0.2 796,024 - ABZR87_RS03855 0.42 +0.1 796,024 - ABZR87_RS03855 0.42 +0.1 796,024 - ABZR87_RS03855 0.42 +0.0 796,024 - ABZR87_RS03855 0.42 -2.5 796,101 + ABZR87_RS03855 0.50 -0.8 796,101 + ABZR87_RS03855 0.50 +0.4 796,102 - ABZR87_RS03855 0.50 -2.4 796,185 + ABZR87_RS03855 0.58 -1.7 796,185 + ABZR87_RS03855 0.58 -0.9 796,185 + ABZR87_RS03855 0.58 +0.5 796,185 + ABZR87_RS03855 0.58 +0.2 796,186 - ABZR87_RS03855 0.58 -0.5 796,186 - ABZR87_RS03855 0.58 -0.7 796,186 - ABZR87_RS03855 0.58 -2.0 796,186 - ABZR87_RS03855 0.58 -0.4 796,186 - ABZR87_RS03855 0.58 -0.2 796,269 + ABZR87_RS03855 0.67 -0.7 796,269 + ABZR87_RS03855 0.67 +0.3 796,270 - ABZR87_RS03855 0.67 -1.4 796,270 - ABZR87_RS03855 0.67 +1.3 796,380 + ABZR87_RS03855 0.78 -1.2 796,381 - ABZR87_RS03855 0.78 -0.6 796,381 - ABZR87_RS03855 0.78 +0.1 796,440 + ABZR87_RS03855 0.83 -0.1 796,440 + ABZR87_RS03855 0.83 +0.3 796,440 + ABZR87_RS03855 0.83 -1.7 796,440 + ABZR87_RS03855 0.83 -1.5 796,441 - ABZR87_RS03855 0.84 +0.5 796,441 - ABZR87_RS03855 0.84 +0.0 796,594 + -0.5 796,594 + -1.2 796,594 + -1.3 796,595 - +0.3 796,638 + +1.3 796,638 + +0.0 796,638 + +1.2 796,638 + -0.7 796,638 + +0.0 796,639 - -0.8 796,639 - -0.1 796,639 - -1.4 796,639 - +0.6 796,639 - +1.3 796,639 - -0.7 796,640 + -2.0 796,640 + -0.4 796,640 + -0.8 796,640 + +1.6 796,640 + +2.5 796,640 + -0.2 796,640 + -0.0 796,641 - -0.7 796,641 - +0.1 796,641 - +0.3 796,641 - +0.0 796,641 - +0.9 796,641 - -0.5 796,641 - -1.0 796,641 - -1.1 796,641 - -0.1 796,641 - +2.0 796,641 - +0.0 796,641 - +1.1 796,717 + -1.0 796,717 + +0.9 796,717 + +1.7 796,717 + +0.8 796,717 + +1.2 796,763 + -0.3 796,805 + -1.4 796,806 - -1.3 796,806 - -0.0 796,929 + -1.1 796,929 + -0.5 796,930 - -0.3 796,930 - -0.9 796,961 + -1.0 796,962 - -0.9 797,184 + ABZR87_RS03860 0.17 -1.3 797,185 - ABZR87_RS03860 0.18 -0.7 797,185 - ABZR87_RS03860 0.18 +0.6 797,185 - ABZR87_RS03860 0.18 +0.2 797,235 + ABZR87_RS03860 0.21 -0.0 797,235 + ABZR87_RS03860 0.21 +0.2 797,235 + ABZR87_RS03860 0.21 +0.4 797,235 + ABZR87_RS03860 0.21 +0.6 797,235 + ABZR87_RS03860 0.21 -0.5 797,235 + ABZR87_RS03860 0.21 -0.5 797,236 - ABZR87_RS03860 0.21 +0.2 797,236 - ABZR87_RS03860 0.21 -0.4 797,236 - ABZR87_RS03860 0.21 -0.3 797,236 - ABZR87_RS03860 0.21 -0.4 797,236 - ABZR87_RS03860 0.21 -0.2 797,304 + ABZR87_RS03860 0.26 +1.3 797,304 + ABZR87_RS03860 0.26 +1.7 797,304 + ABZR87_RS03860 0.26 +1.3 797,304 + ABZR87_RS03860 0.26 -0.3 797,304 + ABZR87_RS03860 0.26 -0.2 797,305 - ABZR87_RS03860 0.26 -1.0 797,305 - ABZR87_RS03860 0.26 +0.1 797,305 - ABZR87_RS03860 0.26 -1.8 797,305 - ABZR87_RS03860 0.26 +1.2 797,305 - ABZR87_RS03860 0.26 +1.1 797,372 + ABZR87_RS03860 0.31 -0.6 797,373 - ABZR87_RS03860 0.32 -1.2 797,373 - ABZR87_RS03860 0.32 -0.2 797,373 - ABZR87_RS03860 0.32 +1.7 797,586 + ABZR87_RS03860 0.47 +0.2 797,587 - ABZR87_RS03860 0.48 +0.3
Or see this region's nucleotide sequence