Experiment: rhizosphere sample 9; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03810 and ABZR87_RS03815 are separated by 35 nucleotides ABZR87_RS03815 and ABZR87_RS03820 are separated by 29 nucleotides ABZR87_RS03820 and ABZR87_RS03825 are separated by 201 nucleotides ABZR87_RS03825 and ABZR87_RS03830 overlap by 4 nucleotides
ABZR87_RS03810: ABZR87_RS03810 - YraN family protein, at 788,372 to 788,749
_RS03810
ABZR87_RS03815: ABZR87_RS03815 - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase, at 788,785 to 789,687
_RS03815
ABZR87_RS03820: ABZR87_RS03820 - septal ring lytic transglycosylase RlpA family protein, at 789,717 to 790,448
_RS03820
ABZR87_RS03825: ABZR87_RS03825 - MBL fold metallo-hydrolase, at 790,650 to 791,306
_RS03825
ABZR87_RS03830: ABZR87_RS03830 - exonuclease, at 791,303 to 792,031
_RS03830
Position (kb) 789
790
791 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 788.843 kb on + strand at 788.843 kb on + strand at 788.843 kb on + strand at 788.843 kb on + strand at 788.843 kb on + strand at 788.843 kb on + strand at 788.843 kb on + strand at 788.843 kb on + strand at 788.843 kb on + strand at 788.843 kb on + strand at 788.843 kb on + strand at 788.843 kb on + strand at 788.844 kb on - strand at 788.844 kb on - strand at 788.844 kb on - strand at 788.844 kb on - strand at 788.844 kb on - strand at 788.844 kb on - strand at 788.844 kb on - strand at 788.844 kb on - strand at 788.844 kb on - strand at 788.844 kb on - strand at 788.844 kb on - strand at 788.844 kb on - strand at 788.844 kb on - strand at 788.844 kb on - strand at 788.845 kb on + strand at 788.845 kb on + strand at 788.845 kb on + strand at 788.845 kb on + strand at 788.845 kb on + strand at 788.845 kb on + strand at 788.845 kb on + strand at 788.845 kb on + strand at 788.845 kb on + strand at 788.845 kb on + strand at 788.845 kb on + strand at 788.845 kb on + strand at 788.845 kb on + strand at 788.845 kb on + strand at 788.845 kb on + strand at 788.845 kb on + strand at 788.845 kb on + strand at 788.845 kb on + strand at 788.845 kb on + strand at 788.845 kb on + strand at 788.846 kb on - strand at 788.846 kb on - strand at 788.846 kb on - strand at 788.846 kb on - strand at 788.846 kb on - strand at 788.846 kb on - strand at 788.846 kb on - strand at 788.846 kb on - strand at 788.846 kb on - strand at 788.846 kb on - strand at 788.846 kb on - strand at 788.846 kb on - strand at 788.846 kb on - strand at 788.846 kb on - strand at 788.846 kb on - strand at 788.846 kb on - strand at 788.846 kb on - strand at 788.899 kb on + strand, within ABZR87_RS03815 at 788.899 kb on + strand, within ABZR87_RS03815 at 788.899 kb on + strand, within ABZR87_RS03815 at 788.899 kb on + strand, within ABZR87_RS03815 at 788.899 kb on + strand, within ABZR87_RS03815 at 788.900 kb on - strand, within ABZR87_RS03815 at 788.947 kb on - strand, within ABZR87_RS03815 at 789.067 kb on + strand, within ABZR87_RS03815 at 789.067 kb on + strand, within ABZR87_RS03815 at 789.067 kb on + strand, within ABZR87_RS03815 at 789.067 kb on + strand, within ABZR87_RS03815 at 789.067 kb on + strand, within ABZR87_RS03815 at 789.067 kb on + strand, within ABZR87_RS03815 at 789.067 kb on + strand, within ABZR87_RS03815 at 789.067 kb on + strand, within ABZR87_RS03815 at 789.067 kb on + strand, within ABZR87_RS03815 at 789.067 kb on + strand, within ABZR87_RS03815 at 789.067 kb on + strand, within ABZR87_RS03815 at 789.067 kb on + strand, within ABZR87_RS03815 at 789.067 kb on + strand, within ABZR87_RS03815 at 789.067 kb on + strand, within ABZR87_RS03815 at 789.067 kb on + strand, within ABZR87_RS03815 at 789.067 kb on + strand, within ABZR87_RS03815 at 789.068 kb on - strand, within ABZR87_RS03815 at 789.068 kb on - strand, within ABZR87_RS03815 at 789.068 kb on - strand, within ABZR87_RS03815 at 789.068 kb on - strand, within ABZR87_RS03815 at 789.319 kb on + strand, within ABZR87_RS03815 at 789.319 kb on + strand, within ABZR87_RS03815 at 789.319 kb on + strand, within ABZR87_RS03815 at 789.320 kb on - strand, within ABZR87_RS03815 at 789.320 kb on - strand, within ABZR87_RS03815 at 789.320 kb on - strand, within ABZR87_RS03815 at 789.621 kb on + strand at 789.646 kb on + strand at 789.646 kb on + strand at 789.646 kb on + strand at 789.646 kb on + strand at 789.922 kb on + strand, within ABZR87_RS03820 at 789.922 kb on + strand, within ABZR87_RS03820 at 789.922 kb on + strand, within ABZR87_RS03820 at 789.922 kb on + strand, within ABZR87_RS03820 at 789.922 kb on + strand, within ABZR87_RS03820 at 789.923 kb on - strand, within ABZR87_RS03820 at 789.923 kb on - strand, within ABZR87_RS03820 at 789.923 kb on - strand, within ABZR87_RS03820 at 789.949 kb on + strand, within ABZR87_RS03820 at 789.949 kb on + strand, within ABZR87_RS03820 at 789.949 kb on + strand, within ABZR87_RS03820 at 789.949 kb on + strand, within ABZR87_RS03820 at 789.949 kb on + strand, within ABZR87_RS03820 at 789.949 kb on + strand, within ABZR87_RS03820 at 789.950 kb on - strand, within ABZR87_RS03820 at 789.950 kb on - strand, within ABZR87_RS03820 at 789.950 kb on - strand, within ABZR87_RS03820 at 789.952 kb on + strand, within ABZR87_RS03820 at 789.952 kb on + strand, within ABZR87_RS03820 at 789.953 kb on - strand, within ABZR87_RS03820 at 789.953 kb on - strand, within ABZR87_RS03820 at 790.064 kb on + strand, within ABZR87_RS03820 at 790.064 kb on + strand, within ABZR87_RS03820 at 790.065 kb on - strand, within ABZR87_RS03820 at 790.114 kb on + strand, within ABZR87_RS03820 at 790.460 kb on + strand at 790.460 kb on + strand at 790.461 kb on - strand at 790.461 kb on - strand at 790.483 kb on - strand at 790.486 kb on + strand at 790.499 kb on - strand at 790.499 kb on - strand at 790.539 kb on - strand at 790.557 kb on + strand at 790.604 kb on - strand at 790.673 kb on + strand at 790.940 kb on - strand, within ABZR87_RS03825 at 791.023 kb on + strand, within ABZR87_RS03825 at 791.023 kb on + strand, within ABZR87_RS03825 at 791.023 kb on + strand, within ABZR87_RS03825 at 791.023 kb on + strand, within ABZR87_RS03825 at 791.024 kb on - strand, within ABZR87_RS03825 at 791.024 kb on - strand, within ABZR87_RS03825 at 791.024 kb on - strand, within ABZR87_RS03825 at 791.024 kb on - strand, within ABZR87_RS03825 at 791.024 kb on - strand, within ABZR87_RS03825 at 791.265 kb on + strand at 791.265 kb on + strand at 791.266 kb on - strand at 791.441 kb on + strand, within ABZR87_RS03830 at 791.441 kb on + strand, within ABZR87_RS03830 at 791.441 kb on + strand, within ABZR87_RS03830 at 791.442 kb on - strand, within ABZR87_RS03830 at 791.442 kb on - strand, within ABZR87_RS03830 at 791.442 kb on - strand, within ABZR87_RS03830
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 9; outgrowth in LB remove 788,843 + +0.0 788,843 + +0.6 788,843 + -0.6 788,843 + +0.0 788,843 + +2.9 788,843 + -2.0 788,843 + -1.5 788,843 + -0.1 788,843 + -0.5 788,843 + +1.4 788,843 + -0.3 788,843 + +0.8 788,844 - +0.3 788,844 - -0.4 788,844 - +1.2 788,844 - -0.8 788,844 - +0.3 788,844 - +0.6 788,844 - -0.5 788,844 - -0.4 788,844 - +1.0 788,844 - -2.8 788,844 - +1.3 788,844 - +0.2 788,844 - +0.0 788,844 - -0.4 788,845 + +0.8 788,845 + -0.5 788,845 + +1.3 788,845 + -1.2 788,845 + +1.7 788,845 + +0.4 788,845 + -0.6 788,845 + +0.5 788,845 + -0.2 788,845 + -0.6 788,845 + +0.2 788,845 + -0.4 788,845 + -0.0 788,845 + -1.2 788,845 + -0.9 788,845 + -0.9 788,845 + +0.2 788,845 + +0.0 788,845 + -0.1 788,845 + -1.2 788,846 - +1.3 788,846 - -1.1 788,846 - +0.3 788,846 - -0.6 788,846 - +0.3 788,846 - -1.2 788,846 - +0.2 788,846 - +0.6 788,846 - +0.5 788,846 - -2.4 788,846 - +1.0 788,846 - -0.8 788,846 - -0.4 788,846 - +0.5 788,846 - +1.0 788,846 - -0.2 788,846 - +0.6 788,899 + ABZR87_RS03815 0.13 -0.9 788,899 + ABZR87_RS03815 0.13 -0.2 788,899 + ABZR87_RS03815 0.13 -0.1 788,899 + ABZR87_RS03815 0.13 -0.4 788,899 + ABZR87_RS03815 0.13 -0.7 788,900 - ABZR87_RS03815 0.13 -0.6 788,947 - ABZR87_RS03815 0.18 +0.4 789,067 + ABZR87_RS03815 0.31 -0.4 789,067 + ABZR87_RS03815 0.31 -0.4 789,067 + ABZR87_RS03815 0.31 -1.6 789,067 + ABZR87_RS03815 0.31 +0.6 789,067 + ABZR87_RS03815 0.31 +0.4 789,067 + ABZR87_RS03815 0.31 -0.6 789,067 + ABZR87_RS03815 0.31 -0.9 789,067 + ABZR87_RS03815 0.31 -0.4 789,067 + ABZR87_RS03815 0.31 +0.1 789,067 + ABZR87_RS03815 0.31 -0.2 789,067 + ABZR87_RS03815 0.31 +2.4 789,067 + ABZR87_RS03815 0.31 +0.6 789,067 + ABZR87_RS03815 0.31 -0.4 789,067 + ABZR87_RS03815 0.31 -0.7 789,067 + ABZR87_RS03815 0.31 +0.3 789,067 + ABZR87_RS03815 0.31 -0.6 789,068 - ABZR87_RS03815 0.31 +0.3 789,068 - ABZR87_RS03815 0.31 -0.0 789,068 - ABZR87_RS03815 0.31 +1.8 789,068 - ABZR87_RS03815 0.31 -0.1 789,319 + ABZR87_RS03815 0.59 +0.6 789,319 + ABZR87_RS03815 0.59 +0.9 789,319 + ABZR87_RS03815 0.59 -0.9 789,320 - ABZR87_RS03815 0.59 -0.6 789,320 - ABZR87_RS03815 0.59 +0.6 789,320 - ABZR87_RS03815 0.59 +1.5 789,621 + +0.2 789,646 + +0.1 789,646 + +0.3 789,646 + +0.3 789,646 + +3.2 789,922 + ABZR87_RS03820 0.28 -0.4 789,922 + ABZR87_RS03820 0.28 -0.3 789,922 + ABZR87_RS03820 0.28 -1.4 789,922 + ABZR87_RS03820 0.28 +0.2 789,922 + ABZR87_RS03820 0.28 -1.6 789,923 - ABZR87_RS03820 0.28 +0.9 789,923 - ABZR87_RS03820 0.28 -0.4 789,923 - ABZR87_RS03820 0.28 +0.2 789,949 + ABZR87_RS03820 0.32 -0.5 789,949 + ABZR87_RS03820 0.32 +0.2 789,949 + ABZR87_RS03820 0.32 -0.9 789,949 + ABZR87_RS03820 0.32 -1.1 789,949 + ABZR87_RS03820 0.32 -0.9 789,949 + ABZR87_RS03820 0.32 -0.2 789,950 - ABZR87_RS03820 0.32 -0.8 789,950 - ABZR87_RS03820 0.32 +0.2 789,950 - ABZR87_RS03820 0.32 +0.3 789,952 + ABZR87_RS03820 0.32 -0.4 789,952 + ABZR87_RS03820 0.32 +0.7 789,953 - ABZR87_RS03820 0.32 +0.6 789,953 - ABZR87_RS03820 0.32 +0.4 790,064 + ABZR87_RS03820 0.47 +0.0 790,064 + ABZR87_RS03820 0.47 -0.8 790,065 - ABZR87_RS03820 0.48 +0.7 790,114 + ABZR87_RS03820 0.54 +0.5 790,460 + -0.1 790,460 + +0.2 790,461 - +0.4 790,461 - +1.2 790,483 - +0.9 790,486 + -0.4 790,499 - -1.1 790,499 - +0.6 790,539 - +0.1 790,557 + -0.1 790,604 - -0.1 790,673 + +1.8 790,940 - ABZR87_RS03825 0.44 -0.4 791,023 + ABZR87_RS03825 0.57 -1.2 791,023 + ABZR87_RS03825 0.57 -1.3 791,023 + ABZR87_RS03825 0.57 +0.1 791,023 + ABZR87_RS03825 0.57 +0.5 791,024 - ABZR87_RS03825 0.57 -2.3 791,024 - ABZR87_RS03825 0.57 +1.5 791,024 - ABZR87_RS03825 0.57 -0.9 791,024 - ABZR87_RS03825 0.57 -0.6 791,024 - ABZR87_RS03825 0.57 -0.7 791,265 + -0.4 791,265 + -0.7 791,266 - -0.7 791,441 + ABZR87_RS03830 0.19 -1.6 791,441 + ABZR87_RS03830 0.19 +0.7 791,441 + ABZR87_RS03830 0.19 +0.7 791,442 - ABZR87_RS03830 0.19 +0.0 791,442 - ABZR87_RS03830 0.19 -0.3 791,442 - ABZR87_RS03830 0.19 +0.2
Or see this region's nucleotide sequence