Experiment: rhizosphere sample 9; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03295 and ABZR87_RS03300 are separated by 9 nucleotides ABZR87_RS03300 and ABZR87_RS03305 are separated by 162 nucleotides ABZR87_RS03305 and ABZR87_RS03310 are separated by 183 nucleotides
ABZR87_RS03295: ABZR87_RS03295 - xanthine dehydrogenase family protein subunit M, at 694,792 to 695,814
_RS03295
ABZR87_RS03300: ABZR87_RS03300 - 2Fe-2S iron-sulfur cluster-binding protein, at 695,824 to 696,564
_RS03300
ABZR87_RS03305: ABZR87_RS03305 - M20/M25/M40 family metallo-hydrolase, at 696,727 to 698,037
_RS03305
ABZR87_RS03310: ABZR87_RS03310 - DUF1835 domain-containing protein, at 698,221 to 699,015
_RS03310
Position (kb) 696
697
698
699 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 695.737 kb on - strand at 695.737 kb on - strand at 695.737 kb on - strand at 695.737 kb on - strand at 695.738 kb on + strand at 695.738 kb on + strand at 695.738 kb on + strand at 695.738 kb on + strand at 695.738 kb on + strand at 695.738 kb on + strand at 695.739 kb on - strand at 695.739 kb on - strand at 695.798 kb on + strand at 695.798 kb on + strand at 695.799 kb on - strand at 695.799 kb on - strand at 695.799 kb on - strand at 695.825 kb on + strand at 695.825 kb on + strand at 695.825 kb on + strand at 695.882 kb on + strand at 696.016 kb on + strand, within ABZR87_RS03300 at 696.017 kb on - strand, within ABZR87_RS03300 at 696.053 kb on + strand, within ABZR87_RS03300 at 696.339 kb on - strand, within ABZR87_RS03300 at 696.339 kb on - strand, within ABZR87_RS03300 at 696.339 kb on - strand, within ABZR87_RS03300 at 696.339 kb on - strand, within ABZR87_RS03300 at 696.354 kb on + strand, within ABZR87_RS03300 at 696.354 kb on + strand, within ABZR87_RS03300 at 696.354 kb on + strand, within ABZR87_RS03300 at 696.355 kb on - strand, within ABZR87_RS03300 at 696.355 kb on - strand, within ABZR87_RS03300 at 696.593 kb on + strand at 696.593 kb on + strand at 696.594 kb on - strand at 696.594 kb on - strand at 696.594 kb on - strand at 696.629 kb on + strand at 696.698 kb on + strand at 696.698 kb on + strand at 696.698 kb on + strand at 696.699 kb on - strand at 696.705 kb on + strand at 696.728 kb on + strand at 696.728 kb on + strand at 696.728 kb on + strand at 696.728 kb on + strand at 696.728 kb on + strand at 696.729 kb on - strand at 696.785 kb on + strand at 696.785 kb on + strand at 696.785 kb on + strand at 696.786 kb on - strand at 696.786 kb on - strand at 696.786 kb on - strand at 696.818 kb on + strand at 696.818 kb on + strand at 696.818 kb on + strand at 696.819 kb on - strand at 696.819 kb on - strand at 696.819 kb on - strand at 696.819 kb on - strand at 696.819 kb on - strand at 696.965 kb on + strand, within ABZR87_RS03305 at 696.965 kb on + strand, within ABZR87_RS03305 at 696.966 kb on - strand, within ABZR87_RS03305 at 697.271 kb on + strand, within ABZR87_RS03305 at 697.271 kb on + strand, within ABZR87_RS03305 at 697.271 kb on + strand, within ABZR87_RS03305 at 697.272 kb on - strand, within ABZR87_RS03305 at 697.272 kb on - strand, within ABZR87_RS03305 at 697.272 kb on - strand, within ABZR87_RS03305 at 697.272 kb on - strand, within ABZR87_RS03305 at 697.505 kb on + strand, within ABZR87_RS03305 at 697.506 kb on - strand, within ABZR87_RS03305 at 697.506 kb on - strand, within ABZR87_RS03305 at 697.593 kb on - strand, within ABZR87_RS03305 at 697.646 kb on + strand, within ABZR87_RS03305 at 697.646 kb on + strand, within ABZR87_RS03305 at 697.646 kb on + strand, within ABZR87_RS03305 at 697.646 kb on + strand, within ABZR87_RS03305 at 697.646 kb on + strand, within ABZR87_RS03305 at 697.646 kb on + strand, within ABZR87_RS03305 at 697.647 kb on - strand, within ABZR87_RS03305 at 697.647 kb on - strand, within ABZR87_RS03305 at 697.751 kb on + strand, within ABZR87_RS03305 at 697.751 kb on + strand, within ABZR87_RS03305 at 697.751 kb on + strand, within ABZR87_RS03305 at 697.752 kb on - strand, within ABZR87_RS03305 at 697.925 kb on + strand at 697.925 kb on + strand at 697.926 kb on - strand at 697.926 kb on - strand at 698.059 kb on + strand at 698.059 kb on + strand at 698.059 kb on + strand at 698.059 kb on + strand at 698.060 kb on - strand at 698.060 kb on - strand at 698.060 kb on - strand at 698.060 kb on - strand at 698.060 kb on - strand at 698.060 kb on - strand at 698.060 kb on - strand at 698.060 kb on - strand at 698.063 kb on + strand at 698.063 kb on + strand at 698.064 kb on - strand at 698.064 kb on - strand at 698.064 kb on - strand at 698.064 kb on - strand at 698.064 kb on - strand at 698.136 kb on - strand at 698.136 kb on - strand at 698.161 kb on + strand at 698.161 kb on + strand at 698.162 kb on - strand at 698.162 kb on - strand at 698.167 kb on + strand at 698.167 kb on + strand at 698.167 kb on + strand at 698.167 kb on + strand at 698.167 kb on + strand at 698.167 kb on + strand at 698.167 kb on + strand at 698.168 kb on - strand at 698.168 kb on - strand at 698.168 kb on - strand at 698.168 kb on - strand at 698.168 kb on - strand at 698.169 kb on + strand at 698.227 kb on + strand at 698.227 kb on + strand at 698.227 kb on + strand at 698.227 kb on + strand at 698.227 kb on + strand at 698.227 kb on + strand at 698.227 kb on + strand at 698.227 kb on + strand at 698.227 kb on + strand at 698.228 kb on - strand at 698.228 kb on - strand at 698.228 kb on - strand at 698.228 kb on - strand at 698.228 kb on - strand at 698.228 kb on - strand at 698.228 kb on - strand at 698.228 kb on - strand at 698.228 kb on - strand at 698.228 kb on - strand at 698.228 kb on - strand at 698.306 kb on + strand, within ABZR87_RS03310 at 698.312 kb on + strand, within ABZR87_RS03310 at 698.312 kb on + strand, within ABZR87_RS03310 at 698.313 kb on - strand, within ABZR87_RS03310 at 698.313 kb on - strand, within ABZR87_RS03310 at 698.313 kb on - strand, within ABZR87_RS03310 at 698.638 kb on + strand, within ABZR87_RS03310 at 698.638 kb on + strand, within ABZR87_RS03310 at 698.638 kb on + strand, within ABZR87_RS03310 at 698.638 kb on + strand, within ABZR87_RS03310 at 698.639 kb on - strand, within ABZR87_RS03310 at 698.639 kb on - strand, within ABZR87_RS03310 at 698.639 kb on - strand, within ABZR87_RS03310 at 698.639 kb on - strand, within ABZR87_RS03310 at 698.639 kb on - strand, within ABZR87_RS03310 at 698.639 kb on - strand, within ABZR87_RS03310 at 698.713 kb on + strand, within ABZR87_RS03310 at 698.714 kb on - strand, within ABZR87_RS03310 at 698.788 kb on + strand, within ABZR87_RS03310 at 698.789 kb on - strand, within ABZR87_RS03310 at 699.013 kb on + strand at 699.013 kb on + strand at 699.014 kb on - strand at 699.014 kb on - strand at 699.014 kb on - strand at 699.014 kb on - strand at 699.014 kb on - strand at 699.014 kb on - strand at 699.014 kb on - strand at 699.021 kb on + strand at 699.021 kb on + strand at 699.021 kb on + strand at 699.021 kb on + strand at 699.021 kb on + strand at 699.022 kb on - strand at 699.022 kb on - strand at 699.022 kb on - strand at 699.022 kb on - strand at 699.022 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 9; outgrowth in LB remove 695,737 - -0.6 695,737 - -0.9 695,737 - +1.3 695,737 - -0.1 695,738 + +0.2 695,738 + -0.7 695,738 + +0.3 695,738 + +1.5 695,738 + -0.1 695,738 + +0.1 695,739 - +1.6 695,739 - +1.1 695,798 + +0.2 695,798 + +0.1 695,799 - +0.5 695,799 - -0.1 695,799 - +2.3 695,825 + +0.8 695,825 + -0.2 695,825 + +0.6 695,882 + -0.9 696,016 + ABZR87_RS03300 0.26 -2.3 696,017 - ABZR87_RS03300 0.26 -0.2 696,053 + ABZR87_RS03300 0.31 +0.1 696,339 - ABZR87_RS03300 0.70 -1.1 696,339 - ABZR87_RS03300 0.70 +0.2 696,339 - ABZR87_RS03300 0.70 -1.0 696,339 - ABZR87_RS03300 0.70 -0.2 696,354 + ABZR87_RS03300 0.72 -1.1 696,354 + ABZR87_RS03300 0.72 -0.1 696,354 + ABZR87_RS03300 0.72 +1.2 696,355 - ABZR87_RS03300 0.72 +1.2 696,355 - ABZR87_RS03300 0.72 +0.2 696,593 + -2.0 696,593 + -0.6 696,594 - -0.3 696,594 - +1.2 696,594 - -0.5 696,629 + -1.0 696,698 + -0.9 696,698 + +1.0 696,698 + -0.1 696,699 - -0.3 696,705 + -0.4 696,728 + -0.6 696,728 + +0.7 696,728 + +0.6 696,728 + -0.5 696,728 + -0.4 696,729 - +0.2 696,785 + -0.2 696,785 + +0.2 696,785 + -0.5 696,786 - -0.4 696,786 - +0.5 696,786 - +0.7 696,818 + +0.4 696,818 + -0.3 696,818 + +0.7 696,819 - +0.7 696,819 - -2.1 696,819 - +1.3 696,819 - -0.3 696,819 - +1.2 696,965 + ABZR87_RS03305 0.18 -0.1 696,965 + ABZR87_RS03305 0.18 -0.4 696,966 - ABZR87_RS03305 0.18 +0.2 697,271 + ABZR87_RS03305 0.41 -0.0 697,271 + ABZR87_RS03305 0.41 -0.8 697,271 + ABZR87_RS03305 0.41 -0.2 697,272 - ABZR87_RS03305 0.42 -2.0 697,272 - ABZR87_RS03305 0.42 -0.9 697,272 - ABZR87_RS03305 0.42 -1.8 697,272 - ABZR87_RS03305 0.42 -0.4 697,505 + ABZR87_RS03305 0.59 -0.4 697,506 - ABZR87_RS03305 0.59 +0.2 697,506 - ABZR87_RS03305 0.59 -0.9 697,593 - ABZR87_RS03305 0.66 -0.3 697,646 + ABZR87_RS03305 0.70 -0.1 697,646 + ABZR87_RS03305 0.70 -1.2 697,646 + ABZR87_RS03305 0.70 -1.2 697,646 + ABZR87_RS03305 0.70 +0.1 697,646 + ABZR87_RS03305 0.70 -0.9 697,646 + ABZR87_RS03305 0.70 -0.9 697,647 - ABZR87_RS03305 0.70 -1.0 697,647 - ABZR87_RS03305 0.70 -0.8 697,751 + ABZR87_RS03305 0.78 +0.3 697,751 + ABZR87_RS03305 0.78 +0.0 697,751 + ABZR87_RS03305 0.78 +0.2 697,752 - ABZR87_RS03305 0.78 +1.5 697,925 + -0.5 697,925 + -0.1 697,926 - +0.2 697,926 - +0.3 698,059 + +0.6 698,059 + +1.2 698,059 + -0.1 698,059 + -0.4 698,060 - -1.2 698,060 - -1.4 698,060 - -0.2 698,060 - +0.3 698,060 - -0.4 698,060 - +0.8 698,060 - -1.2 698,060 - +0.1 698,063 + -0.4 698,063 + -0.4 698,064 - -0.9 698,064 - -1.2 698,064 - +0.2 698,064 - -1.9 698,064 - +1.0 698,136 - +2.2 698,136 - +0.8 698,161 + -1.6 698,161 + +0.5 698,162 - +3.9 698,162 - +0.0 698,167 + -0.7 698,167 + -0.5 698,167 + +0.4 698,167 + +0.6 698,167 + -0.5 698,167 + -0.3 698,167 + -2.4 698,168 - -1.4 698,168 - +1.8 698,168 - +0.3 698,168 - +0.9 698,168 - -0.0 698,169 + -0.1 698,227 + +0.8 698,227 + +0.2 698,227 + +0.3 698,227 + -1.0 698,227 + -0.4 698,227 + +0.1 698,227 + -0.2 698,227 + -0.5 698,227 + -0.1 698,228 - +0.4 698,228 - +0.3 698,228 - -0.1 698,228 - +0.8 698,228 - +2.9 698,228 - +0.8 698,228 - +0.6 698,228 - +0.4 698,228 - +2.2 698,228 - +0.2 698,228 - +1.8 698,306 + ABZR87_RS03310 0.11 -0.5 698,312 + ABZR87_RS03310 0.11 +0.5 698,312 + ABZR87_RS03310 0.11 +0.2 698,313 - ABZR87_RS03310 0.12 +0.3 698,313 - ABZR87_RS03310 0.12 +1.5 698,313 - ABZR87_RS03310 0.12 -0.4 698,638 + ABZR87_RS03310 0.52 -0.1 698,638 + ABZR87_RS03310 0.52 -0.7 698,638 + ABZR87_RS03310 0.52 +1.1 698,638 + ABZR87_RS03310 0.52 +0.1 698,639 - ABZR87_RS03310 0.53 +0.5 698,639 - ABZR87_RS03310 0.53 -0.8 698,639 - ABZR87_RS03310 0.53 +0.6 698,639 - ABZR87_RS03310 0.53 +0.2 698,639 - ABZR87_RS03310 0.53 -0.3 698,639 - ABZR87_RS03310 0.53 -0.1 698,713 + ABZR87_RS03310 0.62 +0.8 698,714 - ABZR87_RS03310 0.62 +0.3 698,788 + ABZR87_RS03310 0.71 +0.8 698,789 - ABZR87_RS03310 0.71 -0.0 699,013 + -0.8 699,013 + +1.0 699,014 - -1.1 699,014 - +1.5 699,014 - -0.5 699,014 - +0.1 699,014 - +0.1 699,014 - -0.0 699,014 - +0.2 699,021 + +0.1 699,021 + -1.2 699,021 + -1.1 699,021 + -1.1 699,021 + +0.1 699,022 - +0.0 699,022 - -0.7 699,022 - +0.2 699,022 - -0.5 699,022 - -1.1
Or see this region's nucleotide sequence