Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02870

Experiment: rhizosphere sample 9; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS02860 and ABZR87_RS02865 are separated by 186 nucleotidesABZR87_RS02865 and ABZR87_RS02870 are separated by 297 nucleotidesABZR87_RS02870 and ABZR87_RS02875 are separated by 99 nucleotides ABZR87_RS02860: ABZR87_RS02860 - 30S ribosomal protein S7, at 593,671 to 594,141 _RS02860 ABZR87_RS02865: ABZR87_RS02865 - 30S ribosomal protein S12, at 594,328 to 594,705 _RS02865 ABZR87_RS02870: ABZR87_RS02870 - MFS transporter, at 595,003 to 596,256 _RS02870 ABZR87_RS02875: ABZR87_RS02875 - LysR family transcriptional regulator, at 596,356 to 597,276 _RS02875 Position (kb) 595 596 597Strain fitness (log2 ratio) -2 -1 0 1 2at 595.055 kb on - strandat 595.102 kb on + strandat 595.102 kb on + strandat 595.184 kb on + strand, within ABZR87_RS02870at 595.185 kb on - strand, within ABZR87_RS02870at 595.185 kb on - strand, within ABZR87_RS02870at 595.185 kb on - strand, within ABZR87_RS02870at 595.235 kb on + strand, within ABZR87_RS02870at 595.235 kb on + strand, within ABZR87_RS02870at 595.236 kb on - strand, within ABZR87_RS02870at 595.236 kb on - strand, within ABZR87_RS02870at 595.236 kb on - strand, within ABZR87_RS02870at 595.236 kb on - strand, within ABZR87_RS02870at 595.594 kb on + strand, within ABZR87_RS02870at 595.594 kb on + strand, within ABZR87_RS02870at 595.595 kb on - strand, within ABZR87_RS02870at 595.622 kb on + strand, within ABZR87_RS02870at 595.622 kb on + strand, within ABZR87_RS02870at 595.623 kb on - strand, within ABZR87_RS02870at 595.623 kb on - strand, within ABZR87_RS02870at 595.643 kb on + strand, within ABZR87_RS02870at 595.730 kb on + strand, within ABZR87_RS02870at 595.730 kb on + strand, within ABZR87_RS02870at 595.731 kb on - strand, within ABZR87_RS02870at 595.731 kb on - strand, within ABZR87_RS02870at 595.795 kb on + strand, within ABZR87_RS02870at 595.795 kb on + strand, within ABZR87_RS02870at 595.795 kb on + strand, within ABZR87_RS02870at 595.795 kb on + strand, within ABZR87_RS02870at 595.795 kb on + strand, within ABZR87_RS02870at 595.796 kb on - strand, within ABZR87_RS02870at 595.796 kb on - strand, within ABZR87_RS02870at 595.796 kb on - strand, within ABZR87_RS02870at 595.796 kb on - strand, within ABZR87_RS02870at 595.796 kb on - strand, within ABZR87_RS02870at 595.796 kb on - strand, within ABZR87_RS02870at 595.796 kb on - strand, within ABZR87_RS02870at 595.981 kb on + strand, within ABZR87_RS02870at 595.981 kb on + strand, within ABZR87_RS02870at 596.143 kb on - strandat 596.290 kb on + strandat 596.291 kb on - strandat 596.291 kb on - strandat 596.291 kb on - strandat 596.291 kb on - strandat 596.291 kb on - strandat 596.291 kb on - strandat 596.291 kb on - strandat 596.291 kb on - strandat 596.291 kb on - strandat 596.312 kb on + strandat 596.313 kb on - strandat 596.317 kb on + strandat 596.332 kb on + strandat 596.332 kb on + strandat 596.333 kb on - strandat 596.343 kb on + strandat 596.343 kb on + strandat 596.355 kb on + strandat 596.355 kb on + strandat 596.355 kb on + strandat 596.356 kb on - strandat 596.847 kb on + strand, within ABZR87_RS02875at 596.847 kb on + strand, within ABZR87_RS02875at 596.847 kb on + strand, within ABZR87_RS02875at 596.847 kb on + strand, within ABZR87_RS02875at 596.848 kb on - strand, within ABZR87_RS02875at 596.848 kb on - strand, within ABZR87_RS02875at 596.848 kb on - strand, within ABZR87_RS02875at 596.848 kb on - strand, within ABZR87_RS02875at 596.851 kb on + strand, within ABZR87_RS02875at 596.851 kb on + strand, within ABZR87_RS02875at 596.851 kb on + strand, within ABZR87_RS02875at 596.852 kb on - strand, within ABZR87_RS02875at 596.852 kb on - strand, within ABZR87_RS02875at 596.852 kb on - strand, within ABZR87_RS02875at 596.852 kb on - strand, within ABZR87_RS02875at 596.867 kb on - strand, within ABZR87_RS02875at 596.930 kb on - strand, within ABZR87_RS02875at 596.930 kb on - strand, within ABZR87_RS02875at 596.930 kb on - strand, within ABZR87_RS02875at 596.938 kb on + strand, within ABZR87_RS02875at 596.938 kb on + strand, within ABZR87_RS02875at 596.938 kb on + strand, within ABZR87_RS02875at 596.938 kb on + strand, within ABZR87_RS02875at 596.939 kb on - strand, within ABZR87_RS02875at 596.950 kb on + strand, within ABZR87_RS02875at 596.951 kb on - strand, within ABZR87_RS02875at 597.082 kb on + strand, within ABZR87_RS02875at 597.082 kb on + strand, within ABZR87_RS02875at 597.083 kb on - strand, within ABZR87_RS02875at 597.083 kb on - strand, within ABZR87_RS02875at 597.083 kb on - strand, within ABZR87_RS02875at 597.100 kb on - strand, within ABZR87_RS02875at 597.136 kb on + strand, within ABZR87_RS02875at 597.136 kb on + strand, within ABZR87_RS02875at 597.136 kb on + strand, within ABZR87_RS02875at 597.136 kb on + strand, within ABZR87_RS02875at 597.136 kb on + strand, within ABZR87_RS02875at 597.136 kb on + strand, within ABZR87_RS02875

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 9; outgrowth in LB
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595,055 - +2.2
595,102 + +0.3
595,102 + -0.5
595,184 + ABZR87_RS02870 0.14 +0.0
595,185 - ABZR87_RS02870 0.15 -0.9
595,185 - ABZR87_RS02870 0.15 +0.5
595,185 - ABZR87_RS02870 0.15 -0.8
595,235 + ABZR87_RS02870 0.19 +0.8
595,235 + ABZR87_RS02870 0.19 -0.2
595,236 - ABZR87_RS02870 0.19 -0.6
595,236 - ABZR87_RS02870 0.19 +0.7
595,236 - ABZR87_RS02870 0.19 -0.4
595,236 - ABZR87_RS02870 0.19 -0.6
595,594 + ABZR87_RS02870 0.47 -1.2
595,594 + ABZR87_RS02870 0.47 -2.4
595,595 - ABZR87_RS02870 0.47 +0.3
595,622 + ABZR87_RS02870 0.49 +1.6
595,622 + ABZR87_RS02870 0.49 -1.3
595,623 - ABZR87_RS02870 0.49 +0.2
595,623 - ABZR87_RS02870 0.49 -0.4
595,643 + ABZR87_RS02870 0.51 +1.6
595,730 + ABZR87_RS02870 0.58 -0.5
595,730 + ABZR87_RS02870 0.58 -0.6
595,731 - ABZR87_RS02870 0.58 +1.3
595,731 - ABZR87_RS02870 0.58 -0.5
595,795 + ABZR87_RS02870 0.63 +0.5
595,795 + ABZR87_RS02870 0.63 -1.2
595,795 + ABZR87_RS02870 0.63 +0.5
595,795 + ABZR87_RS02870 0.63 +0.5
595,795 + ABZR87_RS02870 0.63 +0.0
595,796 - ABZR87_RS02870 0.63 -1.6
595,796 - ABZR87_RS02870 0.63 +0.5
595,796 - ABZR87_RS02870 0.63 -0.5
595,796 - ABZR87_RS02870 0.63 +0.4
595,796 - ABZR87_RS02870 0.63 +0.6
595,796 - ABZR87_RS02870 0.63 +1.2
595,796 - ABZR87_RS02870 0.63 +1.3
595,981 + ABZR87_RS02870 0.78 +0.2
595,981 + ABZR87_RS02870 0.78 -0.3
596,143 - +1.7
596,290 + +0.7
596,291 - +1.5
596,291 - -1.4
596,291 - -0.7
596,291 - -2.4
596,291 - +0.1
596,291 - +0.4
596,291 - +0.7
596,291 - +0.5
596,291 - -0.5
596,312 + +0.9
596,313 - +0.2
596,317 + +1.7
596,332 + -0.3
596,332 + -2.2
596,333 - -0.4
596,343 + -1.8
596,343 + +0.6
596,355 + +0.5
596,355 + -1.2
596,355 + -0.6
596,356 - +1.9
596,847 + ABZR87_RS02875 0.53 +1.2
596,847 + ABZR87_RS02875 0.53 -1.0
596,847 + ABZR87_RS02875 0.53 -1.2
596,847 + ABZR87_RS02875 0.53 -0.2
596,848 - ABZR87_RS02875 0.53 +0.1
596,848 - ABZR87_RS02875 0.53 +1.2
596,848 - ABZR87_RS02875 0.53 -0.1
596,848 - ABZR87_RS02875 0.53 -0.1
596,851 + ABZR87_RS02875 0.54 -0.3
596,851 + ABZR87_RS02875 0.54 -1.1
596,851 + ABZR87_RS02875 0.54 +0.3
596,852 - ABZR87_RS02875 0.54 +0.4
596,852 - ABZR87_RS02875 0.54 -0.0
596,852 - ABZR87_RS02875 0.54 -1.6
596,852 - ABZR87_RS02875 0.54 +0.2
596,867 - ABZR87_RS02875 0.55 -0.1
596,930 - ABZR87_RS02875 0.62 +0.3
596,930 - ABZR87_RS02875 0.62 +0.2
596,930 - ABZR87_RS02875 0.62 +0.0
596,938 + ABZR87_RS02875 0.63 -1.2
596,938 + ABZR87_RS02875 0.63 +0.4
596,938 + ABZR87_RS02875 0.63 -0.3
596,938 + ABZR87_RS02875 0.63 -0.8
596,939 - ABZR87_RS02875 0.63 +0.8
596,950 + ABZR87_RS02875 0.64 +0.2
596,951 - ABZR87_RS02875 0.65 -0.4
597,082 + ABZR87_RS02875 0.79 +1.2
597,082 + ABZR87_RS02875 0.79 -0.8
597,083 - ABZR87_RS02875 0.79 -1.9
597,083 - ABZR87_RS02875 0.79 -0.6
597,083 - ABZR87_RS02875 0.79 +0.6
597,100 - ABZR87_RS02875 0.81 +1.7
597,136 + ABZR87_RS02875 0.85 +0.7
597,136 + ABZR87_RS02875 0.85 -0.4
597,136 + ABZR87_RS02875 0.85 -1.0
597,136 + ABZR87_RS02875 0.85 -0.3
597,136 + ABZR87_RS02875 0.85 -0.8
597,136 + ABZR87_RS02875 0.85 +0.9

Or see this region's nucleotide sequence