Experiment: rhizosphere sample 9; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01675 and ABZR87_RS01680 are separated by 9 nucleotides ABZR87_RS01680 and ABZR87_RS01685 are separated by 251 nucleotides
ABZR87_RS01675: ABZR87_RS01675 - carbohydrate kinase family protein, at 350,964 to 351,899
_RS01675
ABZR87_RS01680: ABZR87_RS01680 - membrane protein, at 351,909 to 352,376
_RS01680
ABZR87_RS01685: ABZR87_RS01685 - histone H1-like DNA-binding protein, at 352,628 to 353,203
_RS01685
Position (kb) 352
353
354 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 351.663 kb on + strand, within ABZR87_RS01675 at 351.664 kb on - strand, within ABZR87_RS01675 at 351.741 kb on + strand, within ABZR87_RS01675 at 351.741 kb on + strand, within ABZR87_RS01675 at 351.891 kb on + strand at 351.892 kb on - strand at 351.897 kb on + strand at 351.898 kb on - strand at 351.921 kb on + strand at 351.921 kb on + strand at 351.921 kb on + strand at 351.921 kb on + strand at 351.921 kb on + strand at 351.922 kb on - strand at 351.922 kb on - strand at 351.922 kb on - strand at 351.922 kb on - strand at 351.922 kb on - strand at 351.922 kb on - strand at 352.002 kb on + strand, within ABZR87_RS01680 at 352.002 kb on + strand, within ABZR87_RS01680 at 352.002 kb on + strand, within ABZR87_RS01680 at 352.002 kb on + strand, within ABZR87_RS01680 at 352.002 kb on + strand, within ABZR87_RS01680 at 352.003 kb on - strand, within ABZR87_RS01680 at 352.003 kb on - strand, within ABZR87_RS01680 at 352.003 kb on - strand, within ABZR87_RS01680 at 352.003 kb on - strand, within ABZR87_RS01680 at 352.003 kb on - strand, within ABZR87_RS01680 at 352.003 kb on - strand, within ABZR87_RS01680 at 352.004 kb on + strand, within ABZR87_RS01680 at 352.004 kb on + strand, within ABZR87_RS01680 at 352.004 kb on + strand, within ABZR87_RS01680 at 352.005 kb on - strand, within ABZR87_RS01680 at 352.005 kb on - strand, within ABZR87_RS01680 at 352.005 kb on - strand, within ABZR87_RS01680 at 352.051 kb on + strand, within ABZR87_RS01680 at 352.051 kb on + strand, within ABZR87_RS01680 at 352.052 kb on - strand, within ABZR87_RS01680 at 352.396 kb on - strand at 352.396 kb on - strand at 352.450 kb on + strand at 352.451 kb on - strand at 352.451 kb on - strand at 352.467 kb on + strand at 352.467 kb on + strand at 352.467 kb on + strand at 352.467 kb on + strand at 352.467 kb on + strand at 352.468 kb on - strand at 352.468 kb on - strand at 352.468 kb on - strand at 352.468 kb on - strand at 352.554 kb on + strand at 352.629 kb on + strand at 352.629 kb on + strand at 352.629 kb on + strand at 352.630 kb on - strand at 352.630 kb on - strand at 352.630 kb on - strand at 352.630 kb on - strand at 352.630 kb on - strand at 353.059 kb on + strand, within ABZR87_RS01685 at 353.059 kb on + strand, within ABZR87_RS01685 at 353.059 kb on + strand, within ABZR87_RS01685 at 353.059 kb on + strand, within ABZR87_RS01685 at 353.059 kb on + strand, within ABZR87_RS01685 at 353.059 kb on + strand, within ABZR87_RS01685 at 353.059 kb on + strand, within ABZR87_RS01685 at 353.060 kb on - strand, within ABZR87_RS01685 at 353.060 kb on - strand, within ABZR87_RS01685 at 353.060 kb on - strand, within ABZR87_RS01685 at 353.060 kb on - strand, within ABZR87_RS01685 at 353.060 kb on - strand, within ABZR87_RS01685 at 353.060 kb on - strand, within ABZR87_RS01685 at 353.060 kb on - strand, within ABZR87_RS01685 at 353.089 kb on + strand, within ABZR87_RS01685 at 353.188 kb on + strand at 353.189 kb on - strand at 353.189 kb on - strand at 353.189 kb on - strand at 353.235 kb on - strand at 353.235 kb on - strand at 353.235 kb on - strand at 353.341 kb on - strand at 353.530 kb on - strand at 353.530 kb on - strand at 353.603 kb on + strand at 353.603 kb on + strand at 353.606 kb on + strand at 353.606 kb on + strand at 353.606 kb on + strand at 353.607 kb on - strand at 353.607 kb on - strand at 353.607 kb on - strand at 353.700 kb on - strand at 353.700 kb on - strand at 353.787 kb on + strand at 353.788 kb on - strand at 353.809 kb on + strand at 353.809 kb on + strand at 353.809 kb on + strand at 353.809 kb on + strand at 353.810 kb on - strand at 353.818 kb on + strand at 353.818 kb on + strand at 353.819 kb on - strand at 353.819 kb on - strand at 353.819 kb on - strand at 354.125 kb on + strand at 354.125 kb on + strand at 354.125 kb on + strand at 354.125 kb on + strand at 354.125 kb on + strand at 354.125 kb on + strand at 354.125 kb on + strand at 354.125 kb on + strand at 354.126 kb on - strand at 354.126 kb on - strand at 354.126 kb on - strand at 354.126 kb on - strand at 354.126 kb on - strand at 354.126 kb on - strand at 354.126 kb on - strand at 354.126 kb on - strand at 354.169 kb on + strand at 354.169 kb on + strand at 354.170 kb on - strand at 354.201 kb on + strand at 354.202 kb on - strand at 354.202 kb on - strand at 354.202 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 9; outgrowth in LB remove 351,663 + ABZR87_RS01675 0.75 +2.9 351,664 - ABZR87_RS01675 0.75 +1.0 351,741 + ABZR87_RS01675 0.83 -0.3 351,741 + ABZR87_RS01675 0.83 +1.0 351,891 + -1.2 351,892 - +1.4 351,897 + +0.0 351,898 - -2.3 351,921 + -0.2 351,921 + +0.2 351,921 + +0.1 351,921 + +1.3 351,921 + +0.0 351,922 - +0.0 351,922 - -0.4 351,922 - -1.4 351,922 - -0.7 351,922 - -0.8 351,922 - +0.1 352,002 + ABZR87_RS01680 0.20 +0.8 352,002 + ABZR87_RS01680 0.20 -0.5 352,002 + ABZR87_RS01680 0.20 +0.2 352,002 + ABZR87_RS01680 0.20 -0.0 352,002 + ABZR87_RS01680 0.20 -0.5 352,003 - ABZR87_RS01680 0.20 -0.2 352,003 - ABZR87_RS01680 0.20 -1.9 352,003 - ABZR87_RS01680 0.20 +0.1 352,003 - ABZR87_RS01680 0.20 -0.1 352,003 - ABZR87_RS01680 0.20 -1.7 352,003 - ABZR87_RS01680 0.20 +1.3 352,004 + ABZR87_RS01680 0.20 +0.9 352,004 + ABZR87_RS01680 0.20 -1.0 352,004 + ABZR87_RS01680 0.20 -0.4 352,005 - ABZR87_RS01680 0.21 +0.9 352,005 - ABZR87_RS01680 0.21 -0.2 352,005 - ABZR87_RS01680 0.21 +0.5 352,051 + ABZR87_RS01680 0.30 -0.2 352,051 + ABZR87_RS01680 0.30 +0.6 352,052 - ABZR87_RS01680 0.31 -0.6 352,396 - -0.2 352,396 - -1.4 352,450 + +0.2 352,451 - -1.0 352,451 - -1.5 352,467 + -0.4 352,467 + -1.7 352,467 + -1.2 352,467 + +0.0 352,467 + -1.0 352,468 - -1.0 352,468 - +0.5 352,468 - -0.8 352,468 - +0.4 352,554 + +0.4 352,629 + +1.4 352,629 + +1.2 352,629 + +0.9 352,630 - -1.8 352,630 - -0.3 352,630 - +0.1 352,630 - -1.4 352,630 - +0.6 353,059 + ABZR87_RS01685 0.75 -2.1 353,059 + ABZR87_RS01685 0.75 -1.6 353,059 + ABZR87_RS01685 0.75 -1.7 353,059 + ABZR87_RS01685 0.75 +1.1 353,059 + ABZR87_RS01685 0.75 -0.2 353,059 + ABZR87_RS01685 0.75 -0.3 353,059 + ABZR87_RS01685 0.75 -2.2 353,060 - ABZR87_RS01685 0.75 +0.4 353,060 - ABZR87_RS01685 0.75 -2.6 353,060 - ABZR87_RS01685 0.75 -3.3 353,060 - ABZR87_RS01685 0.75 -0.0 353,060 - ABZR87_RS01685 0.75 -1.7 353,060 - ABZR87_RS01685 0.75 +0.9 353,060 - ABZR87_RS01685 0.75 -0.8 353,089 + ABZR87_RS01685 0.80 -1.8 353,188 + -0.7 353,189 - -1.3 353,189 - +0.2 353,189 - -1.5 353,235 - -1.9 353,235 - -0.3 353,235 - +0.1 353,341 - -1.8 353,530 - -0.5 353,530 - -2.0 353,603 + -0.4 353,603 + -0.0 353,606 + -1.0 353,606 + +0.8 353,606 + -0.4 353,607 - -1.0 353,607 - -0.4 353,607 - +1.0 353,700 - +0.3 353,700 - +0.2 353,787 + +0.2 353,788 - +0.8 353,809 + -2.7 353,809 + +0.1 353,809 + -2.1 353,809 + -2.0 353,810 - -1.4 353,818 + -0.1 353,818 + -0.6 353,819 - -0.5 353,819 - -1.2 353,819 - -1.1 354,125 + -1.0 354,125 + -1.5 354,125 + -1.6 354,125 + -0.5 354,125 + +0.5 354,125 + -0.2 354,125 + +0.6 354,125 + -1.0 354,126 - -1.4 354,126 - +0.0 354,126 - -0.9 354,126 - -1.2 354,126 - -0.6 354,126 - -2.9 354,126 - +0.9 354,126 - +0.5 354,169 + +1.2 354,169 + +0.5 354,170 - +0.6 354,201 + -0.7 354,202 - +0.4 354,202 - +0.0 354,202 - +1.1
Or see this region's nucleotide sequence