Experiment: rhizosphere sample 9; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01445 and ABZR87_RS01450 are separated by 20 nucleotides ABZR87_RS01450 and ABZR87_RS01455 overlap by 4 nucleotides ABZR87_RS01455 and ABZR87_RS01460 overlap by 4 nucleotides
ABZR87_RS01445: ABZR87_RS01445 - galactonate dehydratase, at 304,406 to 305,554
_RS01445
ABZR87_RS01450: ABZR87_RS01450 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 305,575 to 306,201
_RS01450
ABZR87_RS01455: ABZR87_RS01455 - SDR family oxidoreductase, at 306,198 to 307,004
_RS01455
ABZR87_RS01460: ABZR87_RS01460 - aldose 1-epimerase, at 307,001 to 307,885
_RS01460
Position (kb) 305
306
307 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 304.578 kb on + strand, within ABZR87_RS01445 at 304.578 kb on + strand, within ABZR87_RS01445 at 304.578 kb on + strand, within ABZR87_RS01445 at 304.578 kb on + strand, within ABZR87_RS01445 at 304.579 kb on - strand, within ABZR87_RS01445 at 304.579 kb on - strand, within ABZR87_RS01445 at 304.579 kb on - strand, within ABZR87_RS01445 at 304.579 kb on - strand, within ABZR87_RS01445 at 304.579 kb on - strand, within ABZR87_RS01445 at 304.605 kb on + strand, within ABZR87_RS01445 at 304.605 kb on + strand, within ABZR87_RS01445 at 304.606 kb on - strand, within ABZR87_RS01445 at 304.606 kb on - strand, within ABZR87_RS01445 at 304.606 kb on - strand, within ABZR87_RS01445 at 304.606 kb on - strand, within ABZR87_RS01445 at 304.722 kb on + strand, within ABZR87_RS01445 at 304.723 kb on - strand, within ABZR87_RS01445 at 304.723 kb on - strand, within ABZR87_RS01445 at 304.896 kb on + strand, within ABZR87_RS01445 at 304.896 kb on + strand, within ABZR87_RS01445 at 304.896 kb on + strand, within ABZR87_RS01445 at 304.896 kb on + strand, within ABZR87_RS01445 at 304.897 kb on - strand, within ABZR87_RS01445 at 304.897 kb on - strand, within ABZR87_RS01445 at 304.934 kb on - strand, within ABZR87_RS01445 at 305.205 kb on + strand, within ABZR87_RS01445 at 305.205 kb on + strand, within ABZR87_RS01445 at 305.205 kb on + strand, within ABZR87_RS01445 at 305.205 kb on + strand, within ABZR87_RS01445 at 305.206 kb on - strand, within ABZR87_RS01445 at 305.206 kb on - strand, within ABZR87_RS01445 at 305.206 kb on - strand, within ABZR87_RS01445 at 305.248 kb on - strand, within ABZR87_RS01445 at 305.338 kb on - strand, within ABZR87_RS01445 at 305.352 kb on + strand, within ABZR87_RS01445 at 305.352 kb on + strand, within ABZR87_RS01445 at 305.353 kb on - strand, within ABZR87_RS01445 at 305.353 kb on - strand, within ABZR87_RS01445 at 305.353 kb on - strand, within ABZR87_RS01445 at 305.353 kb on - strand, within ABZR87_RS01445 at 305.403 kb on + strand, within ABZR87_RS01445 at 305.404 kb on - strand, within ABZR87_RS01445 at 305.404 kb on - strand, within ABZR87_RS01445 at 305.529 kb on + strand at 305.529 kb on + strand at 305.529 kb on + strand at 305.530 kb on - strand at 305.530 kb on - strand at 305.603 kb on + strand at 305.664 kb on - strand, within ABZR87_RS01450 at 305.664 kb on - strand, within ABZR87_RS01450 at 305.709 kb on - strand, within ABZR87_RS01450 at 305.793 kb on - strand, within ABZR87_RS01450 at 306.209 kb on - strand at 306.293 kb on - strand, within ABZR87_RS01455 at 306.293 kb on - strand, within ABZR87_RS01455 at 306.454 kb on + strand, within ABZR87_RS01455 at 306.455 kb on - strand, within ABZR87_RS01455 at 306.457 kb on + strand, within ABZR87_RS01455 at 307.032 kb on + strand at 307.033 kb on - strand at 307.164 kb on + strand, within ABZR87_RS01460 at 307.164 kb on + strand, within ABZR87_RS01460 at 307.164 kb on + strand, within ABZR87_RS01460 at 307.165 kb on - strand, within ABZR87_RS01460 at 307.165 kb on - strand, within ABZR87_RS01460 at 307.165 kb on - strand, within ABZR87_RS01460 at 307.165 kb on - strand, within ABZR87_RS01460 at 307.165 kb on - strand, within ABZR87_RS01460 at 307.174 kb on - strand, within ABZR87_RS01460 at 307.174 kb on - strand, within ABZR87_RS01460 at 307.174 kb on - strand, within ABZR87_RS01460
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 9; outgrowth in LB remove 304,578 + ABZR87_RS01445 0.15 -0.6 304,578 + ABZR87_RS01445 0.15 +0.5 304,578 + ABZR87_RS01445 0.15 -1.7 304,578 + ABZR87_RS01445 0.15 +0.4 304,579 - ABZR87_RS01445 0.15 -1.5 304,579 - ABZR87_RS01445 0.15 +0.2 304,579 - ABZR87_RS01445 0.15 +0.3 304,579 - ABZR87_RS01445 0.15 -1.6 304,579 - ABZR87_RS01445 0.15 +0.7 304,605 + ABZR87_RS01445 0.17 +0.7 304,605 + ABZR87_RS01445 0.17 -1.5 304,606 - ABZR87_RS01445 0.17 -0.6 304,606 - ABZR87_RS01445 0.17 +0.0 304,606 - ABZR87_RS01445 0.17 -0.8 304,606 - ABZR87_RS01445 0.17 +1.4 304,722 + ABZR87_RS01445 0.28 +1.0 304,723 - ABZR87_RS01445 0.28 -0.4 304,723 - ABZR87_RS01445 0.28 +2.8 304,896 + ABZR87_RS01445 0.43 +0.5 304,896 + ABZR87_RS01445 0.43 -1.6 304,896 + ABZR87_RS01445 0.43 -0.4 304,896 + ABZR87_RS01445 0.43 -0.6 304,897 - ABZR87_RS01445 0.43 -0.5 304,897 - ABZR87_RS01445 0.43 -0.1 304,934 - ABZR87_RS01445 0.46 -0.3 305,205 + ABZR87_RS01445 0.70 -0.9 305,205 + ABZR87_RS01445 0.70 +0.1 305,205 + ABZR87_RS01445 0.70 +2.6 305,205 + ABZR87_RS01445 0.70 -0.1 305,206 - ABZR87_RS01445 0.70 +0.2 305,206 - ABZR87_RS01445 0.70 +1.2 305,206 - ABZR87_RS01445 0.70 -1.0 305,248 - ABZR87_RS01445 0.73 -0.3 305,338 - ABZR87_RS01445 0.81 -0.5 305,352 + ABZR87_RS01445 0.82 -1.0 305,352 + ABZR87_RS01445 0.82 -1.3 305,353 - ABZR87_RS01445 0.82 -0.7 305,353 - ABZR87_RS01445 0.82 -0.2 305,353 - ABZR87_RS01445 0.82 -1.8 305,353 - ABZR87_RS01445 0.82 +1.0 305,403 + ABZR87_RS01445 0.87 +1.0 305,404 - ABZR87_RS01445 0.87 -0.2 305,404 - ABZR87_RS01445 0.87 +0.9 305,529 + -0.8 305,529 + -3.1 305,529 + -0.6 305,530 - +0.3 305,530 - -0.9 305,603 + +0.4 305,664 - ABZR87_RS01450 0.14 -1.0 305,664 - ABZR87_RS01450 0.14 -1.5 305,709 - ABZR87_RS01450 0.21 -3.3 305,793 - ABZR87_RS01450 0.35 -1.4 306,209 - -0.5 306,293 - ABZR87_RS01455 0.12 -1.3 306,293 - ABZR87_RS01455 0.12 +0.7 306,454 + ABZR87_RS01455 0.32 -0.0 306,455 - ABZR87_RS01455 0.32 -0.9 306,457 + ABZR87_RS01455 0.32 +1.0 307,032 + +1.2 307,033 - -1.6 307,164 + ABZR87_RS01460 0.18 +0.1 307,164 + ABZR87_RS01460 0.18 +1.0 307,164 + ABZR87_RS01460 0.18 +1.2 307,165 - ABZR87_RS01460 0.19 -0.0 307,165 - ABZR87_RS01460 0.19 +1.2 307,165 - ABZR87_RS01460 0.19 +0.5 307,165 - ABZR87_RS01460 0.19 +0.5 307,165 - ABZR87_RS01460 0.19 -0.8 307,174 - ABZR87_RS01460 0.20 +0.5 307,174 - ABZR87_RS01460 0.20 -2.5 307,174 - ABZR87_RS01460 0.20 +0.8
Or see this region's nucleotide sequence