Experiment: rhizosphere sample 9; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01280 and ABZR87_RS01285 are separated by 105 nucleotides ABZR87_RS01285 and ABZR87_RS01290 are separated by 110 nucleotides
ABZR87_RS01280: ABZR87_RS01280 - tRNA guanosine(34) transglycosylase Tgt, at 266,818 to 267,969
_RS01280
ABZR87_RS01285: ABZR87_RS01285 - preprotein translocase subunit YajC, at 268,075 to 268,407
_RS01285
ABZR87_RS01290: ABZR87_RS01290 - protein translocase subunit SecD, at 268,518 to 270,407
_RS01290
Position (kb) 268
269 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 267.262 kb on + strand, within ABZR87_RS01280 at 267.263 kb on - strand, within ABZR87_RS01280 at 267.485 kb on - strand, within ABZR87_RS01280 at 267.580 kb on + strand, within ABZR87_RS01280 at 267.580 kb on + strand, within ABZR87_RS01280 at 267.581 kb on - strand, within ABZR87_RS01280 at 267.581 kb on - strand, within ABZR87_RS01280 at 267.581 kb on - strand, within ABZR87_RS01280 at 267.726 kb on - strand, within ABZR87_RS01280 at 267.769 kb on + strand, within ABZR87_RS01280 at 267.770 kb on - strand, within ABZR87_RS01280 at 267.797 kb on - strand, within ABZR87_RS01280 at 267.862 kb on + strand at 267.865 kb on + strand at 267.865 kb on + strand at 267.865 kb on + strand at 267.865 kb on + strand at 267.865 kb on + strand at 267.866 kb on - strand at 267.866 kb on - strand at 267.866 kb on - strand at 267.866 kb on - strand at 267.866 kb on - strand at 267.866 kb on - strand at 267.866 kb on - strand at 267.866 kb on - strand at 267.868 kb on + strand at 267.868 kb on + strand at 267.869 kb on - strand at 267.968 kb on - strand at 267.968 kb on - strand at 267.968 kb on - strand at 267.968 kb on - strand at 267.968 kb on - strand at 268.021 kb on + strand at 268.021 kb on + strand at 268.021 kb on + strand at 268.021 kb on + strand at 268.021 kb on + strand at 268.021 kb on + strand at 268.021 kb on + strand at 268.021 kb on + strand at 268.021 kb on + strand at 268.022 kb on - strand at 268.022 kb on - strand at 268.096 kb on + strand at 268.312 kb on + strand, within ABZR87_RS01285 at 268.312 kb on + strand, within ABZR87_RS01285 at 268.312 kb on + strand, within ABZR87_RS01285 at 268.405 kb on + strand at 268.470 kb on + strand at 268.470 kb on + strand at 268.470 kb on + strand at 268.470 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 9; outgrowth in LB remove 267,262 + ABZR87_RS01280 0.39 -0.2 267,263 - ABZR87_RS01280 0.39 -0.6 267,485 - ABZR87_RS01280 0.58 -0.8 267,580 + ABZR87_RS01280 0.66 -2.9 267,580 + ABZR87_RS01280 0.66 -1.4 267,581 - ABZR87_RS01280 0.66 +0.7 267,581 - ABZR87_RS01280 0.66 -1.3 267,581 - ABZR87_RS01280 0.66 -1.3 267,726 - ABZR87_RS01280 0.79 -1.6 267,769 + ABZR87_RS01280 0.83 -1.1 267,770 - ABZR87_RS01280 0.83 -0.5 267,797 - ABZR87_RS01280 0.85 +0.3 267,862 + -1.7 267,865 + -1.8 267,865 + +1.2 267,865 + -2.1 267,865 + +0.6 267,865 + -1.2 267,866 - +0.2 267,866 - +0.2 267,866 - +0.5 267,866 - -2.1 267,866 - +1.6 267,866 - -1.1 267,866 - +0.7 267,866 - +0.7 267,868 + +0.2 267,868 + -0.4 267,869 - +1.8 267,968 - -0.7 267,968 - -1.0 267,968 - +0.2 267,968 - +0.4 267,968 - +0.8 268,021 + -1.6 268,021 + -0.6 268,021 + +1.5 268,021 + -0.5 268,021 + +0.1 268,021 + -1.3 268,021 + +0.7 268,021 + +0.5 268,021 + +0.1 268,022 - +0.8 268,022 - -0.4 268,096 + -0.9 268,312 + ABZR87_RS01285 0.71 -1.0 268,312 + ABZR87_RS01285 0.71 +0.5 268,312 + ABZR87_RS01285 0.71 +2.1 268,405 + +0.2 268,470 + -1.8 268,470 + +0.1 268,470 + +2.0 268,470 + +1.6
Or see this region's nucleotide sequence