Experiment: rhizosphere sample 9; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00680 and ABZR87_RS00685 are separated by 109 nucleotides ABZR87_RS00685 and ABZR87_RS00690 are separated by 254 nucleotides ABZR87_RS00690 and ABZR87_RS00695 are separated by 146 nucleotides
ABZR87_RS00680: ABZR87_RS00680 - IclR family transcriptional regulator, at 138,724 to 139,494
_RS00680
ABZR87_RS00685: ABZR87_RS00685 - hypothetical protein, at 139,604 to 140,116
_RS00685
ABZR87_RS00690: ABZR87_RS00690 - ester cyclase, at 140,371 to 140,916
_RS00690
ABZR87_RS00695: ABZR87_RS00695 - DUF2167 domain-containing protein, at 141,063 to 141,992
_RS00695
Position (kb) 140
141 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 139.579 kb on + strand at 139.580 kb on - strand at 139.599 kb on + strand at 139.599 kb on + strand at 139.600 kb on - strand at 139.600 kb on - strand at 139.600 kb on - strand at 139.606 kb on - strand at 139.606 kb on - strand at 139.710 kb on + strand, within ABZR87_RS00685 at 139.710 kb on + strand, within ABZR87_RS00685 at 139.710 kb on + strand, within ABZR87_RS00685 at 139.770 kb on + strand, within ABZR87_RS00685 at 140.101 kb on + strand at 140.102 kb on - strand at 140.135 kb on + strand at 140.135 kb on + strand at 140.135 kb on + strand at 140.135 kb on + strand at 140.135 kb on + strand at 140.136 kb on - strand at 140.136 kb on - strand at 140.136 kb on - strand at 140.163 kb on + strand at 140.220 kb on + strand at 140.221 kb on - strand at 140.221 kb on - strand at 140.333 kb on + strand at 140.333 kb on + strand at 140.334 kb on - strand at 140.334 kb on - strand at 140.334 kb on - strand at 140.334 kb on - strand at 140.542 kb on + strand, within ABZR87_RS00690 at 140.560 kb on - strand, within ABZR87_RS00690 at 140.576 kb on - strand, within ABZR87_RS00690 at 140.831 kb on - strand, within ABZR87_RS00690 at 140.915 kb on - strand at 140.933 kb on - strand at 140.968 kb on - strand at 140.968 kb on - strand at 140.968 kb on - strand at 140.968 kb on - strand at 141.417 kb on + strand, within ABZR87_RS00695 at 141.417 kb on + strand, within ABZR87_RS00695 at 141.418 kb on - strand, within ABZR87_RS00695 at 141.418 kb on - strand, within ABZR87_RS00695 at 141.418 kb on - strand, within ABZR87_RS00695 at 141.432 kb on + strand, within ABZR87_RS00695 at 141.432 kb on + strand, within ABZR87_RS00695 at 141.433 kb on - strand, within ABZR87_RS00695 at 141.433 kb on - strand, within ABZR87_RS00695 at 141.477 kb on + strand, within ABZR87_RS00695 at 141.477 kb on + strand, within ABZR87_RS00695 at 141.477 kb on + strand, within ABZR87_RS00695 at 141.478 kb on - strand, within ABZR87_RS00695 at 141.577 kb on - strand, within ABZR87_RS00695 at 141.577 kb on - strand, within ABZR87_RS00695 at 141.660 kb on + strand, within ABZR87_RS00695 at 141.660 kb on + strand, within ABZR87_RS00695 at 141.660 kb on + strand, within ABZR87_RS00695 at 141.661 kb on - strand, within ABZR87_RS00695 at 141.661 kb on - strand, within ABZR87_RS00695 at 141.661 kb on - strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.690 kb on + strand, within ABZR87_RS00695 at 141.690 kb on + strand, within ABZR87_RS00695 at 141.690 kb on + strand, within ABZR87_RS00695 at 141.690 kb on + strand, within ABZR87_RS00695 at 141.691 kb on - strand, within ABZR87_RS00695 at 141.691 kb on - strand, within ABZR87_RS00695 at 141.792 kb on + strand, within ABZR87_RS00695 at 141.793 kb on - strand, within ABZR87_RS00695 at 141.831 kb on + strand, within ABZR87_RS00695
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 9; outgrowth in LB remove 139,579 + -2.2 139,580 - +0.7 139,599 + -1.0 139,599 + -1.6 139,600 - -0.5 139,600 - +0.1 139,600 - -1.2 139,606 - -0.4 139,606 - -1.8 139,710 + ABZR87_RS00685 0.21 +0.4 139,710 + ABZR87_RS00685 0.21 -0.4 139,710 + ABZR87_RS00685 0.21 +0.8 139,770 + ABZR87_RS00685 0.32 +2.1 140,101 + -0.4 140,102 - +0.5 140,135 + +0.3 140,135 + +0.4 140,135 + -0.6 140,135 + -0.8 140,135 + +0.9 140,136 - +0.0 140,136 - +0.8 140,136 - -0.4 140,163 + -0.5 140,220 + +0.2 140,221 - -1.6 140,221 - -0.4 140,333 + +0.2 140,333 + -0.3 140,334 - +0.3 140,334 - +1.5 140,334 - -0.4 140,334 - +0.2 140,542 + ABZR87_RS00690 0.31 -0.2 140,560 - ABZR87_RS00690 0.35 +1.0 140,576 - ABZR87_RS00690 0.38 -0.7 140,831 - ABZR87_RS00690 0.84 -0.7 140,915 - -0.5 140,933 - +1.1 140,968 - -2.6 140,968 - -1.0 140,968 - -0.8 140,968 - +0.0 141,417 + ABZR87_RS00695 0.38 -0.8 141,417 + ABZR87_RS00695 0.38 +0.3 141,418 - ABZR87_RS00695 0.38 -0.7 141,418 - ABZR87_RS00695 0.38 +0.3 141,418 - ABZR87_RS00695 0.38 -0.2 141,432 + ABZR87_RS00695 0.40 +1.2 141,432 + ABZR87_RS00695 0.40 -0.6 141,433 - ABZR87_RS00695 0.40 -1.2 141,433 - ABZR87_RS00695 0.40 +0.6 141,477 + ABZR87_RS00695 0.45 +1.0 141,477 + ABZR87_RS00695 0.45 -0.0 141,477 + ABZR87_RS00695 0.45 +0.9 141,478 - ABZR87_RS00695 0.45 -0.7 141,577 - ABZR87_RS00695 0.55 -1.1 141,577 - ABZR87_RS00695 0.55 -1.2 141,660 + ABZR87_RS00695 0.64 -0.6 141,660 + ABZR87_RS00695 0.64 -0.1 141,660 + ABZR87_RS00695 0.64 +0.2 141,661 - ABZR87_RS00695 0.64 +0.2 141,661 - ABZR87_RS00695 0.64 -0.1 141,661 - ABZR87_RS00695 0.64 +2.5 141,669 + ABZR87_RS00695 0.65 -2.3 141,669 + ABZR87_RS00695 0.65 +1.3 141,669 + ABZR87_RS00695 0.65 -0.4 141,669 + ABZR87_RS00695 0.65 -0.7 141,669 + ABZR87_RS00695 0.65 +3.2 141,669 + ABZR87_RS00695 0.65 +0.9 141,669 + ABZR87_RS00695 0.65 +0.4 141,669 + ABZR87_RS00695 0.65 -1.3 141,669 + ABZR87_RS00695 0.65 +0.9 141,669 + ABZR87_RS00695 0.65 -1.2 141,669 + ABZR87_RS00695 0.65 -0.7 141,669 + ABZR87_RS00695 0.65 +1.9 141,669 + ABZR87_RS00695 0.65 -2.4 141,669 + ABZR87_RS00695 0.65 +0.3 141,669 + ABZR87_RS00695 0.65 -0.7 141,670 - ABZR87_RS00695 0.65 +0.9 141,670 - ABZR87_RS00695 0.65 +0.2 141,670 - ABZR87_RS00695 0.65 +0.0 141,670 - ABZR87_RS00695 0.65 +0.3 141,670 - ABZR87_RS00695 0.65 +0.4 141,670 - ABZR87_RS00695 0.65 -0.0 141,670 - ABZR87_RS00695 0.65 -0.8 141,670 - ABZR87_RS00695 0.65 +0.1 141,670 - ABZR87_RS00695 0.65 +1.5 141,670 - ABZR87_RS00695 0.65 +0.3 141,670 - ABZR87_RS00695 0.65 -0.9 141,670 - ABZR87_RS00695 0.65 +0.4 141,670 - ABZR87_RS00695 0.65 -0.1 141,670 - ABZR87_RS00695 0.65 -0.7 141,670 - ABZR87_RS00695 0.65 -1.6 141,670 - ABZR87_RS00695 0.65 -0.0 141,670 - ABZR87_RS00695 0.65 -0.4 141,670 - ABZR87_RS00695 0.65 -0.5 141,670 - ABZR87_RS00695 0.65 -0.7 141,670 - ABZR87_RS00695 0.65 -1.0 141,690 + ABZR87_RS00695 0.67 -0.3 141,690 + ABZR87_RS00695 0.67 +0.1 141,690 + ABZR87_RS00695 0.67 +0.4 141,690 + ABZR87_RS00695 0.67 -0.6 141,691 - ABZR87_RS00695 0.68 +1.8 141,691 - ABZR87_RS00695 0.68 -2.1 141,792 + ABZR87_RS00695 0.78 -0.3 141,793 - ABZR87_RS00695 0.78 +0.6 141,831 + ABZR87_RS00695 0.83 -0.7
Or see this region's nucleotide sequence