Experiment: rhizosphere sample 9; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00075 and ABZR87_RS00080 overlap by 1 nucleotides ABZR87_RS00080 and ABZR87_RS00085 overlap by 11 nucleotides ABZR87_RS00085 and ABZR87_RS00090 overlap by 4 nucleotides
ABZR87_RS00075: ABZR87_RS00075 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 16,327 to 17,391
_RS00075
ABZR87_RS00080: ABZR87_RS00080 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 17,391 to 18,011
_RS00080
ABZR87_RS00085: ABZR87_RS00085 - ABC transporter ATP-binding protein, at 18,001 to 18,840
_RS00085
ABZR87_RS00090: ABZR87_RS00090 - iron ABC transporter permease, at 18,837 to 19,856
_RS00090
Position (kb) 18
19 Strain fitness (log2 ratio) -2
-1
0
1 at 17.322 kb on + strand at 17.322 kb on + strand at 17.392 kb on + strand at 17.393 kb on - strand at 17.572 kb on + strand, within ABZR87_RS00080 at 17.572 kb on + strand, within ABZR87_RS00080 at 17.573 kb on - strand, within ABZR87_RS00080 at 17.579 kb on - strand, within ABZR87_RS00080 at 17.710 kb on + strand, within ABZR87_RS00080 at 17.710 kb on + strand, within ABZR87_RS00080 at 17.710 kb on + strand, within ABZR87_RS00080 at 17.711 kb on - strand, within ABZR87_RS00080 at 18.500 kb on + strand, within ABZR87_RS00085 at 18.500 kb on + strand, within ABZR87_RS00085 at 18.500 kb on + strand, within ABZR87_RS00085 at 18.500 kb on + strand, within ABZR87_RS00085 at 18.501 kb on - strand, within ABZR87_RS00085 at 18.862 kb on + strand at 18.862 kb on + strand at 18.862 kb on + strand at 18.863 kb on - strand at 18.894 kb on - strand at 18.894 kb on - strand at 18.894 kb on - strand at 18.894 kb on - strand at 18.933 kb on - strand at 19.112 kb on - strand, within ABZR87_RS00090 at 19.112 kb on - strand, within ABZR87_RS00090 at 19.112 kb on - strand, within ABZR87_RS00090 at 19.112 kb on - strand, within ABZR87_RS00090 at 19.112 kb on - strand, within ABZR87_RS00090 at 19.250 kb on - strand, within ABZR87_RS00090 at 19.561 kb on + strand, within ABZR87_RS00090 at 19.561 kb on + strand, within ABZR87_RS00090 at 19.561 kb on + strand, within ABZR87_RS00090 at 19.561 kb on + strand, within ABZR87_RS00090 at 19.561 kb on + strand, within ABZR87_RS00090 at 19.561 kb on + strand, within ABZR87_RS00090
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 9; outgrowth in LB remove 17,322 + +0.2 17,322 + -1.4 17,392 + -1.1 17,393 - -0.8 17,572 + ABZR87_RS00080 0.29 -0.4 17,572 + ABZR87_RS00080 0.29 +0.1 17,573 - ABZR87_RS00080 0.29 -0.9 17,579 - ABZR87_RS00080 0.30 -0.9 17,710 + ABZR87_RS00080 0.51 -0.7 17,710 + ABZR87_RS00080 0.51 -1.1 17,710 + ABZR87_RS00080 0.51 -2.3 17,711 - ABZR87_RS00080 0.52 +1.0 18,500 + ABZR87_RS00085 0.59 -0.8 18,500 + ABZR87_RS00085 0.59 +0.4 18,500 + ABZR87_RS00085 0.59 -1.0 18,500 + ABZR87_RS00085 0.59 -0.9 18,501 - ABZR87_RS00085 0.60 +1.6 18,862 + +0.1 18,862 + +0.8 18,862 + -1.3 18,863 - +0.8 18,894 - +0.1 18,894 - -0.8 18,894 - +0.6 18,894 - +0.2 18,933 - -2.5 19,112 - ABZR87_RS00090 0.27 +1.4 19,112 - ABZR87_RS00090 0.27 +0.4 19,112 - ABZR87_RS00090 0.27 -1.2 19,112 - ABZR87_RS00090 0.27 -0.5 19,112 - ABZR87_RS00090 0.27 +1.1 19,250 - ABZR87_RS00090 0.40 -0.1 19,561 + ABZR87_RS00090 0.71 -1.4 19,561 + ABZR87_RS00090 0.71 -0.1 19,561 + ABZR87_RS00090 0.71 +1.7 19,561 + ABZR87_RS00090 0.71 +0.1 19,561 + ABZR87_RS00090 0.71 -0.7 19,561 + ABZR87_RS00090 0.71 -0.6
Or see this region's nucleotide sequence