Experiment: Pectin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0548 and BT0549 are separated by 409 nucleotides BT0549 and BT0550 are separated by 125 nucleotides BT0550 and BT0551 are separated by 223 nucleotides
BT0548: BT0548 - diaminopimelate epimerase (NCBI ptt file), at 674,370 to 675,173
BT0548
BT0549: BT0549 - putative thioredoxin (NCBI ptt file), at 675,583 to 675,879
BT0549
BT0550: BT0550 - putative glycerophosphodiester phosphodiesterase (NCBI ptt file), at 676,005 to 676,742
BT0550
BT0551: BT0551 - asparagine synthetase B [glutamine-hydrolyzing] (NCBI ptt file), at 676,966 to 678,645
BT0551
Position (kb) 676
677 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 675.118 kb on + strand at 675.119 kb on - strand at 675.120 kb on + strand at 675.500 kb on + strand at 675.501 kb on - strand at 675.505 kb on + strand at 675.668 kb on - strand, within BT0549 at 675.694 kb on - strand, within BT0549 at 675.697 kb on + strand, within BT0549 at 675.765 kb on + strand, within BT0549 at 675.828 kb on - strand, within BT0549 at 675.860 kb on + strand at 675.860 kb on + strand at 675.899 kb on + strand at 675.914 kb on + strand at 675.914 kb on + strand at 675.949 kb on - strand at 675.953 kb on - strand at 676.002 kb on + strand at 676.094 kb on + strand, within BT0550 at 676.095 kb on - strand, within BT0550 at 676.107 kb on + strand, within BT0550 at 676.225 kb on - strand, within BT0550 at 676.225 kb on - strand, within BT0550 at 676.391 kb on + strand, within BT0550 at 676.422 kb on - strand, within BT0550 at 676.535 kb on + strand, within BT0550 at 676.536 kb on - strand, within BT0550 at 676.578 kb on - strand, within BT0550 at 676.584 kb on + strand, within BT0550 at 676.585 kb on - strand, within BT0550 at 676.832 kb on - strand at 676.913 kb on + strand at 676.914 kb on - strand at 676.936 kb on - strand at 677.121 kb on - strand at 677.241 kb on + strand, within BT0551 at 677.330 kb on - strand, within BT0551 at 677.411 kb on - strand, within BT0551 at 677.496 kb on - strand, within BT0551 at 677.499 kb on + strand, within BT0551 at 677.518 kb on - strand, within BT0551 at 677.674 kb on + strand, within BT0551
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin (C) remove 675,118 + -0.2 675,119 - -1.6 675,120 + +0.6 675,500 + -0.0 675,501 - -0.7 675,505 + -2.3 675,668 - BT0549 0.29 -2.6 675,694 - BT0549 0.37 +0.8 675,697 + BT0549 0.38 -0.7 675,765 + BT0549 0.61 +2.1 675,828 - BT0549 0.82 -1.9 675,860 + -1.2 675,860 + -0.6 675,899 + -0.7 675,914 + -1.7 675,914 + +0.6 675,949 - -0.9 675,953 - -2.7 676,002 + -0.5 676,094 + BT0550 0.12 -2.8 676,095 - BT0550 0.12 -1.9 676,107 + BT0550 0.14 -0.0 676,225 - BT0550 0.30 -1.8 676,225 - BT0550 0.30 -0.0 676,391 + BT0550 0.52 -1.9 676,422 - BT0550 0.57 -0.3 676,535 + BT0550 0.72 -1.9 676,536 - BT0550 0.72 -1.2 676,578 - BT0550 0.78 -2.7 676,584 + BT0550 0.78 -0.0 676,585 - BT0550 0.79 -0.7 676,832 - -1.2 676,913 + -2.4 676,914 - +0.3 676,936 - -0.4 677,121 - -2.1 677,241 + BT0551 0.16 -3.1 677,330 - BT0551 0.22 -0.2 677,411 - BT0551 0.26 -0.4 677,496 - BT0551 0.32 -2.1 677,499 + BT0551 0.32 -0.7 677,518 - BT0551 0.33 -0.9 677,674 + BT0551 0.42 -1.0
Or see this region's nucleotide sequence