Experiment: Thallium(I) acetate 0.0078125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_1890 and labA are separated by 157 nucleotides labA and Synpcc7942_1892 overlap by 4 nucleotides Synpcc7942_1892 and natA overlap by 25 nucleotides natA and natC overlap by 11 nucleotides
Synpcc7942_1890: Synpcc7942_1890 - hypothetical protein, at 1,963,748 to 1,964,254
_1890
Synpcc7942_1891: labA - hypothetical protein, at 1,964,412 to 1,964,972
labA
Synpcc7942_1892: Synpcc7942_1892 - Rhodanese-like, at 1,964,969 to 1,965,778
_1892
Synpcc7942_1893: natA - ATPase, at 1,965,754 to 1,966,530
natA
Synpcc7942_1894: natC - integral membrane protein of the ABC-type Nat permease for neutral amino acids, at 1,966,520 to 1,967,599
natC
Position (kb) 1964
1965
1966 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1963.979 kb on - strand, within Synpcc7942_1890 at 1963.984 kb on - strand, within Synpcc7942_1890 at 1963.984 kb on - strand, within Synpcc7942_1890 at 1964.008 kb on - strand, within Synpcc7942_1890 at 1964.013 kb on - strand, within Synpcc7942_1890 at 1964.031 kb on + strand, within Synpcc7942_1890 at 1964.043 kb on - strand, within Synpcc7942_1890 at 1964.046 kb on + strand, within Synpcc7942_1890 at 1964.067 kb on + strand, within Synpcc7942_1890 at 1964.071 kb on + strand, within Synpcc7942_1890 at 1964.071 kb on + strand, within Synpcc7942_1890 at 1964.076 kb on + strand at 1964.076 kb on + strand, within Synpcc7942_1890 at 1964.076 kb on + strand, within Synpcc7942_1890 at 1964.092 kb on + strand, within Synpcc7942_1890 at 1964.100 kb on - strand, within Synpcc7942_1890 at 1964.110 kb on + strand, within Synpcc7942_1890 at 1964.110 kb on + strand, within Synpcc7942_1890 at 1964.118 kb on - strand, within Synpcc7942_1890 at 1964.118 kb on - strand, within Synpcc7942_1890 at 1964.120 kb on - strand, within Synpcc7942_1890 at 1964.184 kb on + strand, within Synpcc7942_1890 at 1964.204 kb on - strand at 1964.209 kb on - strand at 1964.210 kb on - strand at 1964.210 kb on - strand at 1964.213 kb on + strand at 1964.215 kb on - strand at 1964.237 kb on - strand at 1964.243 kb on - strand at 1964.301 kb on + strand at 1964.301 kb on + strand at 1964.331 kb on + strand at 1964.366 kb on + strand at 1964.383 kb on - strand at 1964.513 kb on + strand, within labA at 1964.546 kb on + strand, within labA at 1964.546 kb on + strand, within labA at 1964.554 kb on - strand, within labA at 1964.554 kb on - strand, within labA at 1964.620 kb on - strand, within labA at 1964.629 kb on - strand, within labA at 1964.674 kb on - strand, within labA at 1964.762 kb on + strand, within labA at 1964.929 kb on + strand at 1964.937 kb on - strand at 1964.937 kb on - strand at 1964.966 kb on + strand at 1964.974 kb on - strand at 1964.981 kb on - strand at 1964.989 kb on - strand at 1965.008 kb on + strand at 1965.027 kb on + strand at 1965.032 kb on - strand at 1965.056 kb on + strand, within Synpcc7942_1892 at 1965.064 kb on - strand at 1965.087 kb on + strand, within Synpcc7942_1892 at 1965.095 kb on - strand, within Synpcc7942_1892 at 1965.097 kb on - strand, within Synpcc7942_1892 at 1965.121 kb on - strand, within Synpcc7942_1892 at 1965.128 kb on - strand, within Synpcc7942_1892 at 1965.128 kb on - strand, within Synpcc7942_1892 at 1965.128 kb on - strand, within Synpcc7942_1892 at 1965.229 kb on + strand, within Synpcc7942_1892 at 1965.231 kb on - strand, within Synpcc7942_1892 at 1965.269 kb on + strand, within Synpcc7942_1892 at 1965.282 kb on - strand, within Synpcc7942_1892 at 1965.306 kb on + strand, within Synpcc7942_1892 at 1965.306 kb on + strand, within Synpcc7942_1892 at 1965.316 kb on - strand, within Synpcc7942_1892 at 1965.316 kb on - strand, within Synpcc7942_1892 at 1965.336 kb on + strand, within Synpcc7942_1892 at 1965.337 kb on + strand, within Synpcc7942_1892 at 1965.337 kb on + strand, within Synpcc7942_1892 at 1965.344 kb on - strand, within Synpcc7942_1892 at 1965.344 kb on - strand, within Synpcc7942_1892 at 1965.345 kb on - strand, within Synpcc7942_1892 at 1965.345 kb on - strand, within Synpcc7942_1892 at 1965.345 kb on - strand, within Synpcc7942_1892 at 1965.345 kb on - strand, within Synpcc7942_1892 at 1965.352 kb on + strand, within Synpcc7942_1892 at 1965.355 kb on - strand, within Synpcc7942_1892 at 1965.446 kb on + strand, within Synpcc7942_1892 at 1965.452 kb on + strand, within Synpcc7942_1892 at 1965.460 kb on - strand, within Synpcc7942_1892 at 1965.498 kb on - strand, within Synpcc7942_1892 at 1965.498 kb on - strand, within Synpcc7942_1892 at 1965.513 kb on + strand, within Synpcc7942_1892 at 1965.521 kb on + strand, within Synpcc7942_1892 at 1965.542 kb on - strand, within Synpcc7942_1892 at 1965.542 kb on - strand, within Synpcc7942_1892 at 1965.600 kb on - strand, within Synpcc7942_1892 at 1965.634 kb on - strand, within Synpcc7942_1892 at 1965.691 kb on + strand, within Synpcc7942_1892 at 1965.750 kb on - strand at 1965.757 kb on + strand at 1965.790 kb on - strand at 1965.813 kb on - strand at 1965.876 kb on - strand, within natA at 1965.882 kb on + strand, within natA at 1965.894 kb on - strand, within natA at 1965.909 kb on + strand, within natA at 1965.909 kb on + strand, within natA at 1965.909 kb on + strand, within natA at 1965.926 kb on + strand, within natA at 1965.963 kb on + strand, within natA at 1965.963 kb on + strand, within natA at 1965.963 kb on + strand, within natA at 1965.963 kb on + strand, within natA at 1965.963 kb on + strand, within natA at 1965.963 kb on + strand, within natA at 1965.963 kb on + strand, within natA at 1965.971 kb on - strand, within natA at 1965.971 kb on - strand, within natA at 1965.971 kb on - strand, within natA at 1965.971 kb on - strand, within natA at 1965.971 kb on - strand, within natA at 1965.971 kb on - strand, within natA at 1965.971 kb on - strand, within natA at 1965.971 kb on - strand, within natA at 1965.971 kb on - strand, within natA at 1965.971 kb on - strand, within natA at 1965.999 kb on - strand, within natA at 1966.036 kb on + strand, within natA at 1966.042 kb on - strand, within natA at 1966.043 kb on + strand, within natA at 1966.058 kb on + strand, within natA at 1966.067 kb on - strand, within natA at 1966.073 kb on + strand, within natA at 1966.073 kb on + strand, within natA at 1966.081 kb on - strand, within natA at 1966.086 kb on - strand, within natA at 1966.114 kb on - strand, within natA at 1966.137 kb on + strand, within natA at 1966.137 kb on + strand, within natA at 1966.145 kb on - strand, within natA at 1966.146 kb on - strand, within natA at 1966.146 kb on - strand, within natA at 1966.146 kb on - strand, within natA at 1966.203 kb on + strand, within natA at 1966.211 kb on - strand, within natA at 1966.211 kb on - strand, within natA at 1966.211 kb on - strand, within natA at 1966.211 kb on - strand, within natA at 1966.228 kb on + strand, within natA at 1966.236 kb on - strand, within natA at 1966.236 kb on - strand, within natA at 1966.236 kb on - strand, within natA at 1966.271 kb on + strand, within natA at 1966.276 kb on + strand, within natA at 1966.288 kb on - strand, within natA at 1966.304 kb on + strand, within natA at 1966.342 kb on - strand, within natA at 1966.364 kb on - strand, within natA at 1966.372 kb on - strand, within natA at 1966.375 kb on - strand, within natA at 1966.411 kb on - strand, within natA at 1966.439 kb on + strand, within natA at 1966.456 kb on + strand at 1966.494 kb on + strand at 1966.494 kb on + strand at 1966.511 kb on + strand at 1966.519 kb on - strand at 1966.540 kb on - strand at 1966.584 kb on + strand at 1966.592 kb on + strand at 1966.595 kb on - strand at 1966.609 kb on - strand at 1966.626 kb on + strand at 1966.645 kb on - strand, within natC at 1966.675 kb on + strand, within natC at 1966.679 kb on + strand, within natC at 1966.687 kb on + strand, within natC at 1966.687 kb on - strand, within natC at 1966.703 kb on + strand, within natC at 1966.703 kb on + strand, within natC at 1966.703 kb on + strand, within natC at 1966.703 kb on + strand, within natC at 1966.703 kb on + strand, within natC at 1966.703 kb on + strand, within natC at 1966.703 kb on + strand, within natC at 1966.703 kb on + strand, within natC at 1966.703 kb on + strand, within natC at 1966.703 kb on + strand, within natC at 1966.703 kb on + strand, within natC at 1966.703 kb on + strand, within natC at 1966.703 kb on + strand, within natC at 1966.711 kb on - strand, within natC at 1966.711 kb on - strand, within natC at 1966.711 kb on - strand, within natC at 1966.711 kb on - strand at 1966.711 kb on - strand, within natC at 1966.711 kb on - strand, within natC at 1966.711 kb on - strand, within natC at 1966.711 kb on - strand, within natC at 1966.711 kb on - strand, within natC at 1966.713 kb on + strand, within natC at 1966.722 kb on - strand, within natC at 1966.722 kb on - strand, within natC at 1966.729 kb on - strand, within natC at 1966.731 kb on + strand, within natC at 1966.736 kb on + strand, within natC at 1966.741 kb on + strand, within natC at 1966.759 kb on + strand, within natC at 1966.766 kb on + strand, within natC at 1966.767 kb on - strand, within natC at 1966.767 kb on - strand, within natC
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.0078125 mg/ml remove 1,963,979 - Synpcc7942_1890 0.46 -1.1 1,963,984 - Synpcc7942_1890 0.47 -2.4 1,963,984 - Synpcc7942_1890 0.47 +1.1 1,964,008 - Synpcc7942_1890 0.51 -2.8 1,964,013 - Synpcc7942_1890 0.52 +0.9 1,964,031 + Synpcc7942_1890 0.56 -0.9 1,964,043 - Synpcc7942_1890 0.58 -1.1 1,964,046 + Synpcc7942_1890 0.59 -0.1 1,964,067 + Synpcc7942_1890 0.63 +1.7 1,964,071 + Synpcc7942_1890 0.64 -0.2 1,964,071 + Synpcc7942_1890 0.64 -2.4 1,964,076 + -0.1 1,964,076 + Synpcc7942_1890 0.65 -0.1 1,964,076 + Synpcc7942_1890 0.65 -0.3 1,964,092 + Synpcc7942_1890 0.68 +2.9 1,964,100 - Synpcc7942_1890 0.69 -2.1 1,964,110 + Synpcc7942_1890 0.71 -0.1 1,964,110 + Synpcc7942_1890 0.71 +0.9 1,964,118 - Synpcc7942_1890 0.73 +1.5 1,964,118 - Synpcc7942_1890 0.73 -1.1 1,964,120 - Synpcc7942_1890 0.73 +1.7 1,964,184 + Synpcc7942_1890 0.86 +0.1 1,964,204 - -0.5 1,964,209 - -2.1 1,964,210 - -2.1 1,964,210 - -2.1 1,964,213 + -0.1 1,964,215 - -2.1 1,964,237 - +1.7 1,964,243 - +1.6 1,964,301 + -1.1 1,964,301 + -0.1 1,964,331 + -2.1 1,964,366 + -2.9 1,964,383 - -1.1 1,964,513 + labA Synpcc7942_1891 0.18 -1.9 1,964,546 + labA Synpcc7942_1891 0.24 -1.1 1,964,546 + labA Synpcc7942_1891 0.24 -3.1 1,964,554 - labA Synpcc7942_1891 0.25 -1.7 1,964,554 - labA Synpcc7942_1891 0.25 -2.4 1,964,620 - labA Synpcc7942_1891 0.37 -0.1 1,964,629 - labA Synpcc7942_1891 0.39 -2.7 1,964,674 - labA Synpcc7942_1891 0.47 -2.4 1,964,762 + labA Synpcc7942_1891 0.62 -0.1 1,964,929 + +2.0 1,964,937 - -2.1 1,964,937 - -0.1 1,964,966 + -1.7 1,964,974 - +1.1 1,964,981 - -0.7 1,964,989 - +2.2 1,965,008 + +0.5 1,965,027 + -2.9 1,965,032 - +2.0 1,965,056 + Synpcc7942_1892 0.11 +0.7 1,965,064 - -0.1 1,965,087 + Synpcc7942_1892 0.15 +1.3 1,965,095 - Synpcc7942_1892 0.16 +0.9 1,965,097 - Synpcc7942_1892 0.16 +1.9 1,965,121 - Synpcc7942_1892 0.19 -0.1 1,965,128 - Synpcc7942_1892 0.20 -1.7 1,965,128 - Synpcc7942_1892 0.20 -2.4 1,965,128 - Synpcc7942_1892 0.20 +0.5 1,965,229 + Synpcc7942_1892 0.32 -0.5 1,965,231 - Synpcc7942_1892 0.32 +0.9 1,965,269 + Synpcc7942_1892 0.37 +0.9 1,965,282 - Synpcc7942_1892 0.39 -0.1 1,965,306 + Synpcc7942_1892 0.42 -0.5 1,965,306 + Synpcc7942_1892 0.42 +0.9 1,965,316 - Synpcc7942_1892 0.43 -0.1 1,965,316 - Synpcc7942_1892 0.43 -0.1 1,965,336 + Synpcc7942_1892 0.45 +0.5 1,965,337 + Synpcc7942_1892 0.45 -2.4 1,965,337 + Synpcc7942_1892 0.45 +1.1 1,965,344 - Synpcc7942_1892 0.46 -0.7 1,965,344 - Synpcc7942_1892 0.46 -1.1 1,965,345 - Synpcc7942_1892 0.46 -1.1 1,965,345 - Synpcc7942_1892 0.46 +1.1 1,965,345 - Synpcc7942_1892 0.46 -1.1 1,965,345 - Synpcc7942_1892 0.46 +0.3 1,965,352 + Synpcc7942_1892 0.47 -0.3 1,965,355 - Synpcc7942_1892 0.48 -0.1 1,965,446 + Synpcc7942_1892 0.59 +0.3 1,965,452 + Synpcc7942_1892 0.60 +0.3 1,965,460 - Synpcc7942_1892 0.61 +0.9 1,965,498 - Synpcc7942_1892 0.65 +1.1 1,965,498 - Synpcc7942_1892 0.65 -0.7 1,965,513 + Synpcc7942_1892 0.67 +2.5 1,965,521 + Synpcc7942_1892 0.68 +1.8 1,965,542 - Synpcc7942_1892 0.71 -0.1 1,965,542 - Synpcc7942_1892 0.71 -1.1 1,965,600 - Synpcc7942_1892 0.78 +1.2 1,965,634 - Synpcc7942_1892 0.82 -0.1 1,965,691 + Synpcc7942_1892 0.89 -0.1 1,965,750 - -1.1 1,965,757 + -0.1 1,965,790 - +1.9 1,965,813 - -2.4 1,965,876 - natA Synpcc7942_1893 0.16 +1.7 1,965,882 + natA Synpcc7942_1893 0.16 -0.1 1,965,894 - natA Synpcc7942_1893 0.18 +2.7 1,965,909 + natA Synpcc7942_1893 0.20 +0.5 1,965,909 + natA Synpcc7942_1893 0.20 +1.3 1,965,909 + natA Synpcc7942_1893 0.20 -1.2 1,965,926 + natA Synpcc7942_1893 0.22 -2.7 1,965,963 + natA Synpcc7942_1893 0.27 -1.7 1,965,963 + natA Synpcc7942_1893 0.27 +1.3 1,965,963 + natA Synpcc7942_1893 0.27 -1.1 1,965,963 + natA Synpcc7942_1893 0.27 -0.1 1,965,963 + natA Synpcc7942_1893 0.27 +0.3 1,965,963 + natA Synpcc7942_1893 0.27 -2.4 1,965,963 + natA Synpcc7942_1893 0.27 +0.9 1,965,971 - natA Synpcc7942_1893 0.28 -1.1 1,965,971 - natA Synpcc7942_1893 0.28 -2.1 1,965,971 - natA Synpcc7942_1893 0.28 +0.9 1,965,971 - natA Synpcc7942_1893 0.28 +0.6 1,965,971 - natA Synpcc7942_1893 0.28 -0.1 1,965,971 - natA Synpcc7942_1893 0.28 -0.1 1,965,971 - natA Synpcc7942_1893 0.28 +0.6 1,965,971 - natA Synpcc7942_1893 0.28 -1.3 1,965,971 - natA Synpcc7942_1893 0.28 +0.9 1,965,971 - natA Synpcc7942_1893 0.28 -1.1 1,965,999 - natA Synpcc7942_1893 0.32 -1.1 1,966,036 + natA Synpcc7942_1893 0.36 +0.6 1,966,042 - natA Synpcc7942_1893 0.37 +0.9 1,966,043 + natA Synpcc7942_1893 0.37 -1.1 1,966,058 + natA Synpcc7942_1893 0.39 +0.9 1,966,067 - natA Synpcc7942_1893 0.40 -1.1 1,966,073 + natA Synpcc7942_1893 0.41 -2.7 1,966,073 + natA Synpcc7942_1893 0.41 -1.7 1,966,081 - natA Synpcc7942_1893 0.42 -0.2 1,966,086 - natA Synpcc7942_1893 0.43 +1.9 1,966,114 - natA Synpcc7942_1893 0.46 -0.1 1,966,137 + natA Synpcc7942_1893 0.49 +0.3 1,966,137 + natA Synpcc7942_1893 0.49 -0.1 1,966,145 - natA Synpcc7942_1893 0.50 -0.1 1,966,146 - natA Synpcc7942_1893 0.50 -1.1 1,966,146 - natA Synpcc7942_1893 0.50 -0.1 1,966,146 - natA Synpcc7942_1893 0.50 +2.1 1,966,203 + natA Synpcc7942_1893 0.58 -1.7 1,966,211 - natA Synpcc7942_1893 0.59 -2.1 1,966,211 - natA Synpcc7942_1893 0.59 +1.5 1,966,211 - natA Synpcc7942_1893 0.59 -1.4 1,966,211 - natA Synpcc7942_1893 0.59 +0.1 1,966,228 + natA Synpcc7942_1893 0.61 -1.1 1,966,236 - natA Synpcc7942_1893 0.62 -1.7 1,966,236 - natA Synpcc7942_1893 0.62 +1.9 1,966,236 - natA Synpcc7942_1893 0.62 +0.9 1,966,271 + natA Synpcc7942_1893 0.67 -0.1 1,966,276 + natA Synpcc7942_1893 0.67 -2.1 1,966,288 - natA Synpcc7942_1893 0.69 +1.7 1,966,304 + natA Synpcc7942_1893 0.71 +1.2 1,966,342 - natA Synpcc7942_1893 0.76 -1.1 1,966,364 - natA Synpcc7942_1893 0.79 -1.1 1,966,372 - natA Synpcc7942_1893 0.80 -1.1 1,966,375 - natA Synpcc7942_1893 0.80 +0.7 1,966,411 - natA Synpcc7942_1893 0.85 +0.3 1,966,439 + natA Synpcc7942_1893 0.88 -0.1 1,966,456 + -2.1 1,966,494 + -0.5 1,966,494 + -0.7 1,966,511 + -1.8 1,966,519 - -1.1 1,966,540 - -1.4 1,966,584 + -2.1 1,966,592 + -1.7 1,966,595 - +1.6 1,966,609 - -0.5 1,966,626 + +1.0 1,966,645 - natC Synpcc7942_1894 0.12 +1.2 1,966,675 + natC Synpcc7942_1894 0.14 +1.2 1,966,679 + natC Synpcc7942_1894 0.15 -1.1 1,966,687 + natC Synpcc7942_1894 0.15 +1.6 1,966,687 - natC Synpcc7942_1894 0.15 -0.3 1,966,703 + natC Synpcc7942_1894 0.17 -2.5 1,966,703 + natC Synpcc7942_1894 0.17 +2.1 1,966,703 + natC Synpcc7942_1894 0.17 -0.1 1,966,703 + natC Synpcc7942_1894 0.17 -1.2 1,966,703 + natC Synpcc7942_1894 0.17 -1.7 1,966,703 + natC Synpcc7942_1894 0.17 -0.1 1,966,703 + natC Synpcc7942_1894 0.17 +0.9 1,966,703 + natC Synpcc7942_1894 0.17 -1.1 1,966,703 + natC Synpcc7942_1894 0.17 +1.7 1,966,703 + natC Synpcc7942_1894 0.17 -0.1 1,966,703 + natC Synpcc7942_1894 0.17 -2.4 1,966,703 + natC Synpcc7942_1894 0.17 +0.9 1,966,703 + natC Synpcc7942_1894 0.17 -2.4 1,966,711 - natC Synpcc7942_1894 0.18 -2.2 1,966,711 - natC Synpcc7942_1894 0.18 -0.5 1,966,711 - natC Synpcc7942_1894 0.18 -0.1 1,966,711 - -0.1 1,966,711 - natC Synpcc7942_1894 0.18 -0.1 1,966,711 - natC Synpcc7942_1894 0.18 +2.2 1,966,711 - natC Synpcc7942_1894 0.18 +1.3 1,966,711 - natC Synpcc7942_1894 0.18 +1.9 1,966,711 - natC Synpcc7942_1894 0.18 -1.1 1,966,713 + natC Synpcc7942_1894 0.18 +0.1 1,966,722 - natC Synpcc7942_1894 0.19 +0.2 1,966,722 - natC Synpcc7942_1894 0.19 +1.1 1,966,729 - natC Synpcc7942_1894 0.19 -0.1 1,966,731 + natC Synpcc7942_1894 0.20 -1.9 1,966,736 + natC Synpcc7942_1894 0.20 +0.7 1,966,741 + natC Synpcc7942_1894 0.20 -0.1 1,966,759 + natC Synpcc7942_1894 0.22 +0.9 1,966,766 + natC Synpcc7942_1894 0.23 -0.1 1,966,767 - natC Synpcc7942_1894 0.23 -0.5 1,966,767 - natC Synpcc7942_1894 0.23 +1.5
Or see this region's nucleotide sequence