Experiment: Thallium(I) acetate 0.0078125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0989 and cobU are separated by 89 nucleotides cobU and pxcA are separated by 9 nucleotides pxcA and Synpcc7942_0992 are separated by 72 nucleotides
Synpcc7942_0989: Synpcc7942_0989 - hypothetical protein, at 997,379 to 997,822
_0989
Synpcc7942_0990: cobU - adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase, at 997,912 to 998,454
cobU
Synpcc7942_0991: pxcA - proton extrusion protein PcxA, at 998,464 to 999,729
pxcA
Synpcc7942_0992: Synpcc7942_0992 - hypothetical protein, at 999,802 to 1,001,799
_0992
Position (kb) 998
999
1000 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 997.473 kb on + strand, within Synpcc7942_0989 at 997.507 kb on + strand, within Synpcc7942_0989 at 997.515 kb on - strand, within Synpcc7942_0989 at 997.518 kb on + strand at 997.526 kb on - strand, within Synpcc7942_0989 at 997.529 kb on + strand, within Synpcc7942_0989 at 997.529 kb on + strand, within Synpcc7942_0989 at 997.531 kb on - strand, within Synpcc7942_0989 at 997.537 kb on - strand, within Synpcc7942_0989 at 997.537 kb on - strand, within Synpcc7942_0989 at 997.561 kb on + strand, within Synpcc7942_0989 at 997.561 kb on + strand, within Synpcc7942_0989 at 997.561 kb on + strand, within Synpcc7942_0989 at 997.561 kb on + strand, within Synpcc7942_0989 at 997.569 kb on - strand, within Synpcc7942_0989 at 997.569 kb on - strand, within Synpcc7942_0989 at 997.569 kb on - strand, within Synpcc7942_0989 at 997.569 kb on - strand, within Synpcc7942_0989 at 997.580 kb on + strand, within Synpcc7942_0989 at 997.582 kb on - strand, within Synpcc7942_0989 at 997.599 kb on + strand, within Synpcc7942_0989 at 997.607 kb on - strand, within Synpcc7942_0989 at 997.607 kb on - strand, within Synpcc7942_0989 at 997.607 kb on - strand at 997.626 kb on + strand, within Synpcc7942_0989 at 997.652 kb on - strand, within Synpcc7942_0989 at 997.695 kb on + strand, within Synpcc7942_0989 at 997.700 kb on + strand, within Synpcc7942_0989 at 997.703 kb on - strand, within Synpcc7942_0989 at 997.723 kb on + strand, within Synpcc7942_0989 at 997.731 kb on + strand, within Synpcc7942_0989 at 997.731 kb on + strand, within Synpcc7942_0989 at 997.731 kb on + strand, within Synpcc7942_0989 at 997.744 kb on - strand, within Synpcc7942_0989 at 997.766 kb on + strand, within Synpcc7942_0989 at 997.774 kb on + strand, within Synpcc7942_0989 at 997.776 kb on - strand, within Synpcc7942_0989 at 997.820 kb on - strand at 997.843 kb on + strand at 998.452 kb on - strand at 998.642 kb on + strand, within pxcA at 998.647 kb on + strand, within pxcA at 998.647 kb on + strand, within pxcA at 998.653 kb on + strand, within pxcA at 998.923 kb on - strand, within pxcA at 998.938 kb on + strand, within pxcA at 999.087 kb on + strand, within pxcA at 999.087 kb on + strand, within pxcA at 999.087 kb on + strand, within pxcA at 999.341 kb on + strand, within pxcA at 999.353 kb on + strand, within pxcA at 999.359 kb on - strand, within pxcA at 999.361 kb on - strand, within pxcA at 999.371 kb on - strand, within pxcA at 999.371 kb on - strand, within pxcA at 999.373 kb on + strand, within pxcA at 999.373 kb on + strand, within pxcA at 999.379 kb on + strand, within pxcA at 999.381 kb on - strand, within pxcA at 999.381 kb on - strand, within pxcA at 999.387 kb on - strand, within pxcA at 999.393 kb on + strand, within pxcA at 999.445 kb on + strand, within pxcA at 999.445 kb on + strand, within pxcA at 999.447 kb on - strand, within pxcA at 999.455 kb on + strand, within pxcA at 999.455 kb on + strand, within pxcA at 999.470 kb on + strand, within pxcA at 999.470 kb on + strand, within pxcA at 999.478 kb on - strand, within pxcA at 999.478 kb on - strand, within pxcA at 999.479 kb on + strand, within pxcA at 999.480 kb on - strand, within pxcA at 999.500 kb on - strand, within pxcA at 999.500 kb on - strand, within pxcA at 999.502 kb on - strand, within pxcA at 999.514 kb on - strand, within pxcA at 999.557 kb on + strand, within pxcA at 999.560 kb on - strand, within pxcA at 999.606 kb on - strand at 999.608 kb on + strand at 999.620 kb on + strand at 999.620 kb on + strand at 999.620 kb on + strand at 999.625 kb on + strand at 999.625 kb on + strand at 999.630 kb on - strand at 999.630 kb on - strand at 999.656 kb on - strand at 999.661 kb on - strand at 999.711 kb on + strand at 999.737 kb on - strand at 999.783 kb on - strand at 999.783 kb on - strand at 999.812 kb on - strand at 999.819 kb on - strand at 999.825 kb on - strand at 999.835 kb on - strand at 999.856 kb on + strand at 999.864 kb on - strand at 999.902 kb on + strand at 999.970 kb on + strand at 999.971 kb on + strand at 999.985 kb on - strand at 999.990 kb on + strand at 1000.014 kb on - strand, within Synpcc7942_0992 at 1000.036 kb on - strand, within Synpcc7942_0992 at 1000.038 kb on + strand, within Synpcc7942_0992 at 1000.046 kb on - strand, within Synpcc7942_0992 at 1000.067 kb on + strand, within Synpcc7942_0992 at 1000.067 kb on + strand, within Synpcc7942_0992 at 1000.083 kb on + strand, within Synpcc7942_0992 at 1000.107 kb on + strand, within Synpcc7942_0992 at 1000.108 kb on + strand, within Synpcc7942_0992 at 1000.108 kb on + strand, within Synpcc7942_0992 at 1000.108 kb on + strand, within Synpcc7942_0992 at 1000.115 kb on - strand, within Synpcc7942_0992 at 1000.153 kb on - strand, within Synpcc7942_0992 at 1000.161 kb on + strand, within Synpcc7942_0992 at 1000.163 kb on - strand, within Synpcc7942_0992 at 1000.166 kb on + strand, within Synpcc7942_0992 at 1000.166 kb on + strand, within Synpcc7942_0992 at 1000.174 kb on - strand, within Synpcc7942_0992 at 1000.174 kb on - strand, within Synpcc7942_0992 at 1000.194 kb on - strand, within Synpcc7942_0992 at 1000.196 kb on + strand, within Synpcc7942_0992 at 1000.196 kb on + strand, within Synpcc7942_0992 at 1000.204 kb on - strand, within Synpcc7942_0992 at 1000.204 kb on - strand, within Synpcc7942_0992 at 1000.220 kb on + strand, within Synpcc7942_0992 at 1000.257 kb on + strand, within Synpcc7942_0992 at 1000.276 kb on + strand, within Synpcc7942_0992 at 1000.280 kb on + strand, within Synpcc7942_0992 at 1000.306 kb on + strand, within Synpcc7942_0992 at 1000.311 kb on + strand, within Synpcc7942_0992 at 1000.311 kb on + strand, within Synpcc7942_0992 at 1000.329 kb on - strand, within Synpcc7942_0992 at 1000.344 kb on + strand, within Synpcc7942_0992 at 1000.352 kb on - strand, within Synpcc7942_0992 at 1000.368 kb on + strand, within Synpcc7942_0992 at 1000.368 kb on + strand, within Synpcc7942_0992 at 1000.368 kb on + strand, within Synpcc7942_0992 at 1000.368 kb on + strand, within Synpcc7942_0992 at 1000.368 kb on + strand, within Synpcc7942_0992 at 1000.376 kb on + strand, within Synpcc7942_0992 at 1000.384 kb on - strand, within Synpcc7942_0992 at 1000.384 kb on - strand, within Synpcc7942_0992 at 1000.384 kb on - strand, within Synpcc7942_0992 at 1000.384 kb on - strand, within Synpcc7942_0992 at 1000.384 kb on - strand, within Synpcc7942_0992 at 1000.420 kb on - strand, within Synpcc7942_0992 at 1000.422 kb on + strand, within Synpcc7942_0992 at 1000.425 kb on - strand, within Synpcc7942_0992 at 1000.465 kb on + strand, within Synpcc7942_0992 at 1000.510 kb on + strand, within Synpcc7942_0992 at 1000.510 kb on + strand, within Synpcc7942_0992 at 1000.518 kb on - strand, within Synpcc7942_0992 at 1000.522 kb on + strand, within Synpcc7942_0992 at 1000.523 kb on + strand, within Synpcc7942_0992 at 1000.523 kb on - strand, within Synpcc7942_0992 at 1000.524 kb on + strand, within Synpcc7942_0992 at 1000.531 kb on - strand, within Synpcc7942_0992 at 1000.532 kb on - strand, within Synpcc7942_0992 at 1000.552 kb on + strand, within Synpcc7942_0992 at 1000.552 kb on + strand, within Synpcc7942_0992 at 1000.560 kb on - strand, within Synpcc7942_0992 at 1000.560 kb on - strand, within Synpcc7942_0992 at 1000.560 kb on - strand, within Synpcc7942_0992 at 1000.582 kb on + strand, within Synpcc7942_0992 at 1000.590 kb on - strand, within Synpcc7942_0992 at 1000.595 kb on - strand, within Synpcc7942_0992 at 1000.616 kb on - strand, within Synpcc7942_0992 at 1000.620 kb on + strand, within Synpcc7942_0992 at 1000.689 kb on + strand, within Synpcc7942_0992 at 1000.692 kb on - strand, within Synpcc7942_0992 at 1000.695 kb on - strand, within Synpcc7942_0992 at 1000.695 kb on - strand, within Synpcc7942_0992 at 1000.705 kb on - strand, within Synpcc7942_0992 at 1000.720 kb on + strand, within Synpcc7942_0992
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.0078125 mg/ml remove 997,473 + Synpcc7942_0989 0.21 +1.6 997,507 + Synpcc7942_0989 0.29 +2.6 997,515 - Synpcc7942_0989 0.31 +1.5 997,518 + -1.0 997,526 - Synpcc7942_0989 0.33 -0.0 997,529 + Synpcc7942_0989 0.34 -1.0 997,529 + Synpcc7942_0989 0.34 -0.0 997,531 - Synpcc7942_0989 0.34 +1.5 997,537 - Synpcc7942_0989 0.36 -1.0 997,537 - Synpcc7942_0989 0.36 -0.0 997,561 + Synpcc7942_0989 0.41 -0.6 997,561 + Synpcc7942_0989 0.41 -2.0 997,561 + Synpcc7942_0989 0.41 -0.6 997,561 + Synpcc7942_0989 0.41 -1.3 997,569 - Synpcc7942_0989 0.43 +0.8 997,569 - Synpcc7942_0989 0.43 +0.4 997,569 - Synpcc7942_0989 0.43 -2.4 997,569 - Synpcc7942_0989 0.43 +0.2 997,580 + Synpcc7942_0989 0.45 -0.5 997,582 - Synpcc7942_0989 0.46 -2.8 997,599 + Synpcc7942_0989 0.50 -0.6 997,607 - Synpcc7942_0989 0.51 -0.4 997,607 - Synpcc7942_0989 0.51 +0.1 997,607 - -0.0 997,626 + Synpcc7942_0989 0.56 -1.0 997,652 - Synpcc7942_0989 0.61 -0.4 997,695 + Synpcc7942_0989 0.71 +0.3 997,700 + Synpcc7942_0989 0.72 -0.0 997,703 - Synpcc7942_0989 0.73 +0.5 997,723 + Synpcc7942_0989 0.77 +1.8 997,731 + Synpcc7942_0989 0.79 -0.6 997,731 + Synpcc7942_0989 0.79 +0.9 997,731 + Synpcc7942_0989 0.79 -0.0 997,744 - Synpcc7942_0989 0.82 -0.6 997,766 + Synpcc7942_0989 0.87 +0.2 997,774 + Synpcc7942_0989 0.89 -1.0 997,776 - Synpcc7942_0989 0.89 +2.6 997,820 - +1.0 997,843 + -0.0 998,452 - +1.3 998,642 + pxcA Synpcc7942_0991 0.14 +2.4 998,647 + pxcA Synpcc7942_0991 0.14 +3.4 998,647 + pxcA Synpcc7942_0991 0.14 +0.6 998,653 + pxcA Synpcc7942_0991 0.15 +1.4 998,923 - pxcA Synpcc7942_0991 0.36 +3.7 998,938 + pxcA Synpcc7942_0991 0.37 -1.6 999,087 + pxcA Synpcc7942_0991 0.49 -0.0 999,087 + pxcA Synpcc7942_0991 0.49 +1.6 999,087 + pxcA Synpcc7942_0991 0.49 +3.9 999,341 + pxcA Synpcc7942_0991 0.69 -1.4 999,353 + pxcA Synpcc7942_0991 0.70 +1.0 999,359 - pxcA Synpcc7942_0991 0.71 +1.0 999,361 - pxcA Synpcc7942_0991 0.71 -1.0 999,371 - pxcA Synpcc7942_0991 0.72 +1.3 999,371 - pxcA Synpcc7942_0991 0.72 +1.7 999,373 + pxcA Synpcc7942_0991 0.72 +4.4 999,373 + pxcA Synpcc7942_0991 0.72 +0.2 999,379 + pxcA Synpcc7942_0991 0.72 +2.9 999,381 - pxcA Synpcc7942_0991 0.72 +1.4 999,381 - pxcA Synpcc7942_0991 0.72 +1.6 999,387 - pxcA Synpcc7942_0991 0.73 +2.3 999,393 + pxcA Synpcc7942_0991 0.73 -1.0 999,445 + pxcA Synpcc7942_0991 0.77 +3.6 999,445 + pxcA Synpcc7942_0991 0.77 +1.0 999,447 - pxcA Synpcc7942_0991 0.78 +1.6 999,455 + pxcA Synpcc7942_0991 0.78 +2.7 999,455 + pxcA Synpcc7942_0991 0.78 +1.2 999,470 + pxcA Synpcc7942_0991 0.79 +3.0 999,470 + pxcA Synpcc7942_0991 0.79 -1.0 999,478 - pxcA Synpcc7942_0991 0.80 +2.0 999,478 - pxcA Synpcc7942_0991 0.80 +0.7 999,479 + pxcA Synpcc7942_0991 0.80 +1.0 999,480 - pxcA Synpcc7942_0991 0.80 +2.6 999,500 - pxcA Synpcc7942_0991 0.82 +0.8 999,500 - pxcA Synpcc7942_0991 0.82 +3.2 999,502 - pxcA Synpcc7942_0991 0.82 +1.4 999,514 - pxcA Synpcc7942_0991 0.83 +1.1 999,557 + pxcA Synpcc7942_0991 0.86 +3.1 999,560 - pxcA Synpcc7942_0991 0.87 +1.6 999,606 - +2.0 999,608 + +1.6 999,620 + +1.3 999,620 + +0.7 999,620 + -0.0 999,625 + +4.6 999,625 + -0.0 999,630 - +1.6 999,630 - -1.0 999,656 - +3.2 999,661 - -0.0 999,711 + -1.6 999,737 - +1.0 999,783 - -1.0 999,783 - -1.7 999,812 - -0.4 999,819 - -1.6 999,825 - +0.7 999,835 - +1.8 999,856 + +3.1 999,864 - +1.3 999,902 + -0.0 999,970 + +0.3 999,971 + +0.3 999,985 - +1.8 999,990 + -0.0 1,000,014 - Synpcc7942_0992 0.11 +1.1 1,000,036 - Synpcc7942_0992 0.12 -1.6 1,000,038 + Synpcc7942_0992 0.12 -2.0 1,000,046 - Synpcc7942_0992 0.12 +2.3 1,000,067 + Synpcc7942_0992 0.13 -1.6 1,000,067 + Synpcc7942_0992 0.13 +1.7 1,000,083 + Synpcc7942_0992 0.14 -1.0 1,000,107 + Synpcc7942_0992 0.15 -1.8 1,000,108 + Synpcc7942_0992 0.15 +0.3 1,000,108 + Synpcc7942_0992 0.15 +3.7 1,000,108 + Synpcc7942_0992 0.15 -0.1 1,000,115 - Synpcc7942_0992 0.16 -0.4 1,000,153 - Synpcc7942_0992 0.18 +1.8 1,000,161 + Synpcc7942_0992 0.18 -2.4 1,000,163 - Synpcc7942_0992 0.18 +0.6 1,000,166 + Synpcc7942_0992 0.18 +0.6 1,000,166 + Synpcc7942_0992 0.18 +1.9 1,000,174 - Synpcc7942_0992 0.19 -2.0 1,000,174 - Synpcc7942_0992 0.19 -0.0 1,000,194 - Synpcc7942_0992 0.20 -0.0 1,000,196 + Synpcc7942_0992 0.20 +1.0 1,000,196 + Synpcc7942_0992 0.20 -2.6 1,000,204 - Synpcc7942_0992 0.20 -0.1 1,000,204 - Synpcc7942_0992 0.20 +2.3 1,000,220 + Synpcc7942_0992 0.21 +1.0 1,000,257 + Synpcc7942_0992 0.23 -0.0 1,000,276 + Synpcc7942_0992 0.24 +1.6 1,000,280 + Synpcc7942_0992 0.24 +2.0 1,000,306 + Synpcc7942_0992 0.25 +2.2 1,000,311 + Synpcc7942_0992 0.25 -0.0 1,000,311 + Synpcc7942_0992 0.25 +2.5 1,000,329 - Synpcc7942_0992 0.26 +3.1 1,000,344 + Synpcc7942_0992 0.27 -2.4 1,000,352 - Synpcc7942_0992 0.28 +1.8 1,000,368 + Synpcc7942_0992 0.28 -0.6 1,000,368 + Synpcc7942_0992 0.28 +3.4 1,000,368 + Synpcc7942_0992 0.28 +0.6 1,000,368 + Synpcc7942_0992 0.28 -0.6 1,000,368 + Synpcc7942_0992 0.28 +0.1 1,000,376 + Synpcc7942_0992 0.29 -0.2 1,000,384 - Synpcc7942_0992 0.29 -4.1 1,000,384 - Synpcc7942_0992 0.29 -0.0 1,000,384 - Synpcc7942_0992 0.29 -0.0 1,000,384 - Synpcc7942_0992 0.29 +0.1 1,000,384 - Synpcc7942_0992 0.29 +0.4 1,000,420 - Synpcc7942_0992 0.31 -0.0 1,000,422 + Synpcc7942_0992 0.31 -0.3 1,000,425 - Synpcc7942_0992 0.31 +1.6 1,000,465 + Synpcc7942_0992 0.33 -0.0 1,000,510 + Synpcc7942_0992 0.35 +1.8 1,000,510 + Synpcc7942_0992 0.35 -1.6 1,000,518 - Synpcc7942_0992 0.36 +1.8 1,000,522 + Synpcc7942_0992 0.36 -0.0 1,000,523 + Synpcc7942_0992 0.36 +0.7 1,000,523 - Synpcc7942_0992 0.36 -1.4 1,000,524 + Synpcc7942_0992 0.36 +0.3 1,000,531 - Synpcc7942_0992 0.36 -0.0 1,000,532 - Synpcc7942_0992 0.37 -2.6 1,000,552 + Synpcc7942_0992 0.38 -1.0 1,000,552 + Synpcc7942_0992 0.38 -0.0 1,000,560 - Synpcc7942_0992 0.38 +0.8 1,000,560 - Synpcc7942_0992 0.38 +1.9 1,000,560 - Synpcc7942_0992 0.38 -0.0 1,000,582 + Synpcc7942_0992 0.39 -2.2 1,000,590 - Synpcc7942_0992 0.39 -2.6 1,000,595 - Synpcc7942_0992 0.40 -0.0 1,000,616 - Synpcc7942_0992 0.41 +2.0 1,000,620 + Synpcc7942_0992 0.41 -0.6 1,000,689 + Synpcc7942_0992 0.44 -0.3 1,000,692 - Synpcc7942_0992 0.45 -0.2 1,000,695 - Synpcc7942_0992 0.45 -0.0 1,000,695 - Synpcc7942_0992 0.45 -2.4 1,000,705 - Synpcc7942_0992 0.45 -0.0 1,000,720 + Synpcc7942_0992 0.46 +1.1
Or see this region's nucleotide sequence