Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS26285

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS26280 and RR42_RS26285 are separated by 100 nucleotidesRR42_RS26285 and RR42_RS26290 are separated by 276 nucleotides RR42_RS26280: RR42_RS26280 - poly(3-hydroxyalkanoate) depolymerase, at 1,255,700 to 1,256,770 _RS26280 RR42_RS26285: RR42_RS26285 - ureidoglycolate hydrolase, at 1,256,871 to 1,257,389 _RS26285 RR42_RS26290: RR42_RS26290 - MFS transporter permease, at 1,257,666 to 1,258,985 _RS26290 Position (kb) 1256 1257 1258Strain fitness (log2 ratio) -2 -1 0 1 2at 1255.964 kb on + strand, within RR42_RS26280at 1255.965 kb on - strand, within RR42_RS26280at 1255.965 kb on - strand, within RR42_RS26280at 1255.973 kb on + strand, within RR42_RS26280at 1255.973 kb on + strand, within RR42_RS26280at 1255.973 kb on + strand, within RR42_RS26280at 1255.973 kb on + strand, within RR42_RS26280at 1255.974 kb on - strand, within RR42_RS26280at 1256.032 kb on + strand, within RR42_RS26280at 1256.033 kb on - strand, within RR42_RS26280at 1256.033 kb on - strand, within RR42_RS26280at 1256.258 kb on + strand, within RR42_RS26280at 1256.258 kb on + strand, within RR42_RS26280at 1256.485 kb on + strand, within RR42_RS26280at 1256.630 kb on + strand, within RR42_RS26280at 1256.630 kb on + strand, within RR42_RS26280at 1256.631 kb on - strand, within RR42_RS26280at 1256.674 kb on + strandat 1256.674 kb on + strandat 1256.674 kb on + strandat 1256.675 kb on - strandat 1256.675 kb on - strandat 1256.675 kb on - strandat 1256.675 kb on - strandat 1256.687 kb on + strandat 1256.768 kb on + strandat 1256.768 kb on + strandat 1256.768 kb on + strandat 1256.768 kb on + strandat 1256.769 kb on - strandat 1256.769 kb on - strandat 1256.769 kb on - strandat 1256.769 kb on - strandat 1256.887 kb on + strandat 1256.887 kb on + strandat 1256.888 kb on - strandat 1257.004 kb on + strand, within RR42_RS26285at 1257.004 kb on + strand, within RR42_RS26285at 1257.004 kb on + strand, within RR42_RS26285at 1257.005 kb on - strand, within RR42_RS26285at 1257.172 kb on + strand, within RR42_RS26285at 1257.331 kb on - strand, within RR42_RS26285at 1257.536 kb on + strandat 1257.536 kb on + strandat 1257.536 kb on + strandat 1257.736 kb on - strandat 1257.736 kb on - strandat 1257.780 kb on + strandat 1257.780 kb on + strandat 1257.780 kb on + strandat 1257.780 kb on + strandat 1257.781 kb on - strandat 1257.781 kb on - strandat 1257.781 kb on - strandat 1257.781 kb on - strandat 1257.830 kb on + strand, within RR42_RS26290at 1257.830 kb on + strand, within RR42_RS26290at 1257.830 kb on + strand, within RR42_RS26290at 1257.831 kb on - strand, within RR42_RS26290at 1257.831 kb on - strand, within RR42_RS26290at 1257.831 kb on - strand, within RR42_RS26290at 1257.897 kb on + strand, within RR42_RS26290at 1257.897 kb on + strand, within RR42_RS26290at 1257.898 kb on - strand, within RR42_RS26290at 1258.029 kb on + strand, within RR42_RS26290at 1258.029 kb on + strand, within RR42_RS26290at 1258.030 kb on - strand, within RR42_RS26290at 1258.030 kb on - strand, within RR42_RS26290at 1258.030 kb on - strand, within RR42_RS26290at 1258.030 kb on - strand, within RR42_RS26290at 1258.030 kb on - strand, within RR42_RS26290at 1258.089 kb on + strand, within RR42_RS26290at 1258.089 kb on + strand, within RR42_RS26290at 1258.098 kb on + strand, within RR42_RS26290at 1258.099 kb on - strand, within RR42_RS26290at 1258.296 kb on + strand, within RR42_RS26290

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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1,255,964 + RR42_RS26280 0.25 -0.2
1,255,965 - RR42_RS26280 0.25 +0.1
1,255,965 - RR42_RS26280 0.25 +0.2
1,255,973 + RR42_RS26280 0.25 +0.6
1,255,973 + RR42_RS26280 0.25 -0.8
1,255,973 + RR42_RS26280 0.25 -0.0
1,255,973 + RR42_RS26280 0.25 +0.4
1,255,974 - RR42_RS26280 0.26 -0.8
1,256,032 + RR42_RS26280 0.31 +1.5
1,256,033 - RR42_RS26280 0.31 -0.6
1,256,033 - RR42_RS26280 0.31 +0.1
1,256,258 + RR42_RS26280 0.52 +0.8
1,256,258 + RR42_RS26280 0.52 +0.9
1,256,485 + RR42_RS26280 0.73 -0.6
1,256,630 + RR42_RS26280 0.87 -0.4
1,256,630 + RR42_RS26280 0.87 -0.2
1,256,631 - RR42_RS26280 0.87 -0.9
1,256,674 + -0.9
1,256,674 + +0.3
1,256,674 + +0.3
1,256,675 - -0.2
1,256,675 - +0.2
1,256,675 - +0.7
1,256,675 - -0.1
1,256,687 + +0.8
1,256,768 + +0.9
1,256,768 + -0.1
1,256,768 + +0.2
1,256,768 + +0.8
1,256,769 - -0.4
1,256,769 - -0.1
1,256,769 - -1.4
1,256,769 - -0.1
1,256,887 + +1.2
1,256,887 + -2.4
1,256,888 - +1.1
1,257,004 + RR42_RS26285 0.26 +0.7
1,257,004 + RR42_RS26285 0.26 +0.1
1,257,004 + RR42_RS26285 0.26 +0.5
1,257,005 - RR42_RS26285 0.26 -2.0
1,257,172 + RR42_RS26285 0.58 +1.8
1,257,331 - RR42_RS26285 0.89 +0.4
1,257,536 + +0.5
1,257,536 + -0.5
1,257,536 + -0.2
1,257,736 - +0.0
1,257,736 - +0.3
1,257,780 + -0.9
1,257,780 + -0.0
1,257,780 + +0.3
1,257,780 + +0.5
1,257,781 - -0.3
1,257,781 - +0.7
1,257,781 - +0.1
1,257,781 - -0.8
1,257,830 + RR42_RS26290 0.12 +0.5
1,257,830 + RR42_RS26290 0.12 +0.6
1,257,830 + RR42_RS26290 0.12 +0.5
1,257,831 - RR42_RS26290 0.12 -0.5
1,257,831 - RR42_RS26290 0.12 +0.3
1,257,831 - RR42_RS26290 0.12 -0.2
1,257,897 + RR42_RS26290 0.17 +1.2
1,257,897 + RR42_RS26290 0.17 +0.9
1,257,898 - RR42_RS26290 0.18 +0.0
1,258,029 + RR42_RS26290 0.28 -0.0
1,258,029 + RR42_RS26290 0.28 -0.3
1,258,030 - RR42_RS26290 0.28 +0.4
1,258,030 - RR42_RS26290 0.28 -1.1
1,258,030 - RR42_RS26290 0.28 +0.2
1,258,030 - RR42_RS26290 0.28 +0.5
1,258,030 - RR42_RS26290 0.28 +2.2
1,258,089 + RR42_RS26290 0.32 -0.7
1,258,089 + RR42_RS26290 0.32 +0.6
1,258,098 + RR42_RS26290 0.33 +0.8
1,258,099 - RR42_RS26290 0.33 +0.2
1,258,296 + RR42_RS26290 0.48 +0.0

Or see this region's nucleotide sequence