Experiment: L-Leucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS19475 and RR42_RS19480 are separated by 285 nucleotides RR42_RS19480 and RR42_RS19485 are separated by 36 nucleotides RR42_RS19485 and RR42_RS19490 are separated by 44 nucleotides RR42_RS19490 and RR42_RS19495 are separated by 58 nucleotides
RR42_RS19475: RR42_RS19475 - general secretion pathway protein, at 4,206,297 to 4,206,896
_RS19475
RR42_RS19480: RR42_RS19480 - secretion system protein G, at 4,207,182 to 4,207,649
_RS19480
RR42_RS19485: RR42_RS19485 - general secretion pathway protein GspH, at 4,207,686 to 4,208,180
_RS19485
RR42_RS19490: RR42_RS19490 - general secretion pathway protein GspI, at 4,208,225 to 4,208,605
_RS19490
RR42_RS19495: RR42_RS19495 - general secretion pathway protein GspJ, at 4,208,664 to 4,209,335
_RS19495
Position (kb) 4207
4208
4209 Strain fitness (log2 ratio) -2
-1
0
1 at 4206.819 kb on + strand, within RR42_RS19475 at 4206.819 kb on + strand, within RR42_RS19475 at 4206.922 kb on + strand at 4206.922 kb on + strand at 4206.922 kb on + strand at 4206.922 kb on + strand at 4206.922 kb on + strand at 4206.944 kb on - strand at 4206.944 kb on - strand at 4206.944 kb on - strand at 4207.093 kb on + strand at 4207.094 kb on - strand at 4207.095 kb on + strand at 4207.095 kb on + strand at 4207.095 kb on + strand at 4207.096 kb on - strand at 4207.096 kb on - strand at 4207.140 kb on - strand at 4207.141 kb on + strand at 4207.141 kb on + strand at 4207.141 kb on + strand at 4207.141 kb on + strand at 4207.141 kb on + strand at 4207.141 kb on + strand at 4207.141 kb on + strand at 4207.142 kb on - strand at 4207.142 kb on - strand at 4207.142 kb on - strand at 4207.162 kb on - strand at 4207.168 kb on + strand at 4207.344 kb on - strand, within RR42_RS19480 at 4207.395 kb on + strand, within RR42_RS19480 at 4207.395 kb on + strand, within RR42_RS19480 at 4207.481 kb on + strand, within RR42_RS19480 at 4207.482 kb on - strand, within RR42_RS19480 at 4207.482 kb on - strand, within RR42_RS19480 at 4207.500 kb on + strand, within RR42_RS19480 at 4207.501 kb on - strand, within RR42_RS19480 at 4207.539 kb on + strand, within RR42_RS19480 at 4207.540 kb on - strand, within RR42_RS19480 at 4207.540 kb on - strand, within RR42_RS19480 at 4207.545 kb on + strand, within RR42_RS19480 at 4207.546 kb on - strand, within RR42_RS19480 at 4207.546 kb on - strand, within RR42_RS19480 at 4207.546 kb on - strand, within RR42_RS19480 at 4207.647 kb on + strand at 4207.647 kb on + strand at 4207.647 kb on + strand at 4207.796 kb on - strand, within RR42_RS19485 at 4208.160 kb on + strand at 4208.161 kb on - strand at 4208.212 kb on + strand at 4208.212 kb on + strand at 4208.213 kb on - strand at 4208.463 kb on - strand, within RR42_RS19490 at 4208.463 kb on - strand, within RR42_RS19490 at 4208.463 kb on - strand, within RR42_RS19490 at 4208.612 kb on + strand at 4208.622 kb on - strand at 4208.630 kb on + strand at 4208.630 kb on + strand at 4208.630 kb on + strand at 4208.630 kb on + strand at 4208.630 kb on + strand at 4208.631 kb on - strand at 4208.631 kb on - strand at 4208.812 kb on + strand, within RR42_RS19495 at 4208.812 kb on + strand, within RR42_RS19495 at 4208.813 kb on - strand, within RR42_RS19495 at 4208.813 kb on - strand, within RR42_RS19495 at 4208.813 kb on - strand, within RR42_RS19495 at 4208.813 kb on - strand, within RR42_RS19495 at 4208.814 kb on + strand, within RR42_RS19495 at 4208.814 kb on + strand, within RR42_RS19495 at 4208.815 kb on - strand, within RR42_RS19495 at 4208.815 kb on - strand, within RR42_RS19495 at 4208.815 kb on - strand, within RR42_RS19495 at 4208.958 kb on + strand, within RR42_RS19495
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (N) remove 4,206,819 + RR42_RS19475 0.87 +0.2 4,206,819 + RR42_RS19475 0.87 +0.1 4,206,922 + -0.2 4,206,922 + +0.4 4,206,922 + -0.3 4,206,922 + +0.3 4,206,922 + -0.6 4,206,944 - -2.0 4,206,944 - -0.3 4,206,944 - -0.2 4,207,093 + -1.0 4,207,094 - +0.1 4,207,095 + -0.3 4,207,095 + -0.4 4,207,095 + -0.9 4,207,096 - -0.5 4,207,096 - +0.5 4,207,140 - +0.7 4,207,141 + -0.5 4,207,141 + -0.3 4,207,141 + +0.4 4,207,141 + -0.8 4,207,141 + +0.0 4,207,141 + -0.0 4,207,141 + -1.4 4,207,142 - +0.2 4,207,142 - +0.2 4,207,142 - +0.1 4,207,162 - -1.3 4,207,168 + +0.2 4,207,344 - RR42_RS19480 0.35 +0.1 4,207,395 + RR42_RS19480 0.46 -0.8 4,207,395 + RR42_RS19480 0.46 -0.2 4,207,481 + RR42_RS19480 0.64 -0.3 4,207,482 - RR42_RS19480 0.64 -0.7 4,207,482 - RR42_RS19480 0.64 +0.5 4,207,500 + RR42_RS19480 0.68 -0.5 4,207,501 - RR42_RS19480 0.68 +0.5 4,207,539 + RR42_RS19480 0.76 -0.5 4,207,540 - RR42_RS19480 0.76 -0.3 4,207,540 - RR42_RS19480 0.76 +0.4 4,207,545 + RR42_RS19480 0.78 +0.7 4,207,546 - RR42_RS19480 0.78 +0.4 4,207,546 - RR42_RS19480 0.78 -0.4 4,207,546 - RR42_RS19480 0.78 -0.3 4,207,647 + -0.8 4,207,647 + +0.4 4,207,647 + -0.7 4,207,796 - RR42_RS19485 0.22 -1.4 4,208,160 + +0.3 4,208,161 - +0.2 4,208,212 + +0.1 4,208,212 + -2.5 4,208,213 - +0.9 4,208,463 - RR42_RS19490 0.62 +0.2 4,208,463 - RR42_RS19490 0.62 +1.5 4,208,463 - RR42_RS19490 0.62 +0.3 4,208,612 + -1.2 4,208,622 - +0.5 4,208,630 + +1.0 4,208,630 + -1.0 4,208,630 + +0.4 4,208,630 + -2.1 4,208,630 + +0.4 4,208,631 - -0.3 4,208,631 - -0.5 4,208,812 + RR42_RS19495 0.22 -1.2 4,208,812 + RR42_RS19495 0.22 +0.2 4,208,813 - RR42_RS19495 0.22 -1.9 4,208,813 - RR42_RS19495 0.22 +0.4 4,208,813 - RR42_RS19495 0.22 -0.1 4,208,813 - RR42_RS19495 0.22 +0.2 4,208,814 + RR42_RS19495 0.22 -0.2 4,208,814 + RR42_RS19495 0.22 +0.3 4,208,815 - RR42_RS19495 0.22 -0.2 4,208,815 - RR42_RS19495 0.22 +0.4 4,208,815 - RR42_RS19495 0.22 +1.4 4,208,958 + RR42_RS19495 0.44 -0.3
Or see this region's nucleotide sequence