Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS12030

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS12020 and RR42_RS12025 are separated by 76 nucleotidesRR42_RS12025 and RR42_RS12030 are separated by 82 nucleotidesRR42_RS12030 and RR42_RS12035 are separated by 107 nucleotides RR42_RS12020: RR42_RS12020 - GCN5 family acetyltransferase, at 2,576,935 to 2,577,471 _RS12020 RR42_RS12025: RR42_RS12025 - hypothetical protein, at 2,577,548 to 2,578,123 _RS12025 RR42_RS12030: RR42_RS12030 - DNA repair protein RadA, at 2,578,206 to 2,579,567 _RS12030 RR42_RS12035: RR42_RS12035 - alanine racemase, at 2,579,675 to 2,580,790 _RS12035 Position (kb) 2578 2579 2580Strain fitness (log2 ratio) -1 0 1 2at 2577.588 kb on + strandat 2577.589 kb on - strandat 2577.841 kb on + strand, within RR42_RS12025at 2577.851 kb on + strand, within RR42_RS12025at 2577.851 kb on + strand, within RR42_RS12025at 2577.852 kb on - strand, within RR42_RS12025at 2577.903 kb on + strand, within RR42_RS12025at 2577.903 kb on + strand, within RR42_RS12025at 2577.903 kb on + strand, within RR42_RS12025at 2577.903 kb on + strand, within RR42_RS12025at 2577.903 kb on + strand, within RR42_RS12025at 2577.903 kb on + strand, within RR42_RS12025at 2577.903 kb on + strand, within RR42_RS12025at 2577.904 kb on - strand, within RR42_RS12025at 2577.904 kb on - strand, within RR42_RS12025at 2577.904 kb on - strand, within RR42_RS12025at 2577.904 kb on - strand, within RR42_RS12025at 2577.961 kb on - strand, within RR42_RS12025at 2577.961 kb on - strand, within RR42_RS12025at 2577.987 kb on + strand, within RR42_RS12025at 2577.988 kb on - strand, within RR42_RS12025at 2577.988 kb on - strand, within RR42_RS12025at 2578.162 kb on - strandat 2579.212 kb on + strand, within RR42_RS12030at 2579.543 kb on + strandat 2579.543 kb on + strandat 2579.543 kb on + strandat 2579.543 kb on + strandat 2579.543 kb on + strandat 2579.544 kb on - strandat 2579.544 kb on - strandat 2579.545 kb on + strandat 2579.545 kb on + strandat 2579.545 kb on + strandat 2579.546 kb on - strandat 2579.546 kb on - strandat 2579.546 kb on - strandat 2579.546 kb on - strandat 2579.562 kb on - strandat 2579.577 kb on + strandat 2579.578 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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2,577,588 + -0.1
2,577,589 - +0.1
2,577,841 + RR42_RS12025 0.51 +0.2
2,577,851 + RR42_RS12025 0.53 +0.2
2,577,851 + RR42_RS12025 0.53 -0.6
2,577,852 - RR42_RS12025 0.53 +0.3
2,577,903 + RR42_RS12025 0.62 +0.7
2,577,903 + RR42_RS12025 0.62 +0.3
2,577,903 + RR42_RS12025 0.62 +0.7
2,577,903 + RR42_RS12025 0.62 -0.6
2,577,903 + RR42_RS12025 0.62 +0.4
2,577,903 + RR42_RS12025 0.62 -0.3
2,577,903 + RR42_RS12025 0.62 +1.9
2,577,904 - RR42_RS12025 0.62 +0.2
2,577,904 - RR42_RS12025 0.62 -0.6
2,577,904 - RR42_RS12025 0.62 -0.9
2,577,904 - RR42_RS12025 0.62 +0.2
2,577,961 - RR42_RS12025 0.72 -0.7
2,577,961 - RR42_RS12025 0.72 +0.2
2,577,987 + RR42_RS12025 0.76 +1.7
2,577,988 - RR42_RS12025 0.76 +1.3
2,577,988 - RR42_RS12025 0.76 +1.0
2,578,162 - -0.0
2,579,212 + RR42_RS12030 0.74 -0.3
2,579,543 + +0.9
2,579,543 + +1.7
2,579,543 + -0.5
2,579,543 + +0.7
2,579,543 + -0.1
2,579,544 - +0.5
2,579,544 - +1.0
2,579,545 + -0.0
2,579,545 + -0.7
2,579,545 + -0.4
2,579,546 - -0.4
2,579,546 - -0.0
2,579,546 - -0.6
2,579,546 - -0.1
2,579,562 - +1.7
2,579,577 + +1.4
2,579,578 - -0.4

Or see this region's nucleotide sequence