Experiment: L-Leucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS09410 and RR42_RS09415 are separated by 349 nucleotides RR42_RS09415 and RR42_RS09420 are separated by 542 nucleotides
RR42_RS09410: RR42_RS09410 - hypothetical protein, at 1,994,748 to 1,996,640
_RS09410
RR42_RS09415: RR42_RS09415 - allantoate amidohydrolase, at 1,996,990 to 1,998,243
_RS09415
RR42_RS09420: RR42_RS09420 - TetR family transcriptional regulator, at 1,998,786 to 1,999,484
_RS09420
Position (kb)
1996
1997
1998
1999 Strain fitness (log2 ratio)
-1
0
1 at 1996.040 kb on - strand, within RR42_RS09410 at 1996.061 kb on - strand, within RR42_RS09410 at 1996.061 kb on - strand, within RR42_RS09410 at 1996.138 kb on + strand, within RR42_RS09410 at 1996.239 kb on - strand, within RR42_RS09410 at 1996.366 kb on + strand, within RR42_RS09410 at 1996.367 kb on - strand, within RR42_RS09410 at 1996.581 kb on - strand at 1996.605 kb on - strand at 1996.712 kb on - strand at 1996.951 kb on + strand at 1996.952 kb on - strand at 1997.661 kb on + strand, within RR42_RS09415 at 1997.661 kb on + strand, within RR42_RS09415 at 1997.662 kb on - strand, within RR42_RS09415 at 1997.840 kb on + strand, within RR42_RS09415 at 1997.840 kb on + strand, within RR42_RS09415 at 1997.840 kb on + strand, within RR42_RS09415 at 1997.840 kb on + strand, within RR42_RS09415 at 1997.840 kb on + strand, within RR42_RS09415 at 1997.840 kb on + strand, within RR42_RS09415 at 1997.840 kb on + strand, within RR42_RS09415 at 1997.840 kb on + strand, within RR42_RS09415 at 1997.840 kb on + strand, within RR42_RS09415 at 1997.841 kb on - strand, within RR42_RS09415 at 1997.841 kb on - strand, within RR42_RS09415 at 1997.841 kb on - strand, within RR42_RS09415 at 1997.841 kb on - strand, within RR42_RS09415 at 1998.119 kb on + strand at 1998.119 kb on + strand at 1998.150 kb on - strand at 1998.424 kb on - strand at 1998.424 kb on - strand at 1998.553 kb on + strand at 1998.553 kb on + strand at 1998.553 kb on + strand at 1998.554 kb on - strand at 1998.554 kb on - strand at 1998.554 kb on - strand at 1998.554 kb on - strand at 1998.554 kb on - strand at 1998.564 kb on + strand at 1998.564 kb on + strand at 1998.565 kb on - strand at 1998.565 kb on - strand at 1999.140 kb on + strand, within RR42_RS09420 at 1999.140 kb on + strand, within RR42_RS09420 at 1999.140 kb on + strand, within RR42_RS09420 at 1999.141 kb on - strand, within RR42_RS09420
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (N) remove 1,996,040 - RR42_RS09410 0.68 +0.0 1,996,061 - RR42_RS09410 0.69 +1.5 1,996,061 - RR42_RS09410 0.69 -0.2 1,996,138 + RR42_RS09410 0.73 -0.2 1,996,239 - RR42_RS09410 0.79 -1.2 1,996,366 + RR42_RS09410 0.85 -0.0 1,996,367 - RR42_RS09410 0.86 +0.0 1,996,581 - +0.3 1,996,605 - -1.2 1,996,712 - +0.2 1,996,951 + -0.3 1,996,952 - -0.1 1,997,661 + RR42_RS09415 0.54 +1.3 1,997,661 + RR42_RS09415 0.54 +0.9 1,997,662 - RR42_RS09415 0.54 +0.5 1,997,840 + RR42_RS09415 0.68 +0.1 1,997,840 + RR42_RS09415 0.68 -0.2 1,997,840 + RR42_RS09415 0.68 +0.4 1,997,840 + RR42_RS09415 0.68 +0.9 1,997,840 + RR42_RS09415 0.68 +0.0 1,997,840 + RR42_RS09415 0.68 -0.5 1,997,840 + RR42_RS09415 0.68 -0.7 1,997,840 + RR42_RS09415 0.68 +1.7 1,997,840 + RR42_RS09415 0.68 +0.4 1,997,841 - RR42_RS09415 0.68 -0.5 1,997,841 - RR42_RS09415 0.68 +0.7 1,997,841 - RR42_RS09415 0.68 -0.2 1,997,841 - RR42_RS09415 0.68 +0.2 1,998,119 + +1.2 1,998,119 + +1.2 1,998,150 - +0.3 1,998,424 - -0.9 1,998,424 - +0.7 1,998,553 + -0.8 1,998,553 + +0.0 1,998,553 + +0.3 1,998,554 - -0.4 1,998,554 - -0.1 1,998,554 - -0.5 1,998,554 - -0.2 1,998,554 - +0.9 1,998,564 + +1.3 1,998,564 + +0.1 1,998,565 - +0.0 1,998,565 - -0.5 1,999,140 + RR42_RS09420 0.51 -0.5 1,999,140 + RR42_RS09420 0.51 -0.3 1,999,140 + RR42_RS09420 0.51 -0.1 1,999,141 - RR42_RS09420 0.51 -0.6
Or see this region's nucleotide sequence