Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS06320

Experiment: L-Leucine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS06315 and RR42_RS06320 are separated by 25 nucleotidesRR42_RS06320 and RR42_RS06325 are separated by 278 nucleotides RR42_RS06315: RR42_RS06315 - RNA methyltransferase, at 1,386,644 to 1,387,645 _RS06315 RR42_RS06320: RR42_RS06320 - 3-methylitaconate isomerase, at 1,387,671 to 1,388,177 _RS06320 RR42_RS06325: RR42_RS06325 - serine O-acetyltransferase, at 1,388,456 to 1,389,199 _RS06325 Position (kb) 1387 1388 1389Strain fitness (log2 ratio) -1 0 1 2at 1387.014 kb on + strand, within RR42_RS06315at 1387.014 kb on + strand, within RR42_RS06315at 1387.014 kb on + strand, within RR42_RS06315at 1387.015 kb on - strand, within RR42_RS06315at 1387.071 kb on - strand, within RR42_RS06315at 1387.301 kb on + strand, within RR42_RS06315at 1387.400 kb on + strand, within RR42_RS06315at 1387.401 kb on - strand, within RR42_RS06315at 1387.564 kb on + strandat 1387.565 kb on - strandat 1387.666 kb on - strandat 1387.666 kb on - strandat 1387.668 kb on + strandat 1387.668 kb on + strandat 1387.668 kb on + strandat 1387.669 kb on - strandat 1387.669 kb on - strandat 1387.669 kb on - strandat 1387.669 kb on - strandat 1387.669 kb on - strandat 1387.669 kb on - strandat 1387.669 kb on - strandat 1388.140 kb on - strandat 1388.140 kb on - strandat 1388.351 kb on + strandat 1388.352 kb on - strandat 1389.014 kb on + strand, within RR42_RS06325at 1389.014 kb on + strand, within RR42_RS06325

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
remove
1,387,014 + RR42_RS06315 0.37 +0.4
1,387,014 + RR42_RS06315 0.37 +0.3
1,387,014 + RR42_RS06315 0.37 +0.1
1,387,015 - RR42_RS06315 0.37 +0.4
1,387,071 - RR42_RS06315 0.43 +1.4
1,387,301 + RR42_RS06315 0.66 +0.3
1,387,400 + RR42_RS06315 0.75 -0.3
1,387,401 - RR42_RS06315 0.76 +0.3
1,387,564 + -1.1
1,387,565 - +0.1
1,387,666 - -0.0
1,387,666 - +0.4
1,387,668 + -1.6
1,387,668 + +0.1
1,387,668 + -1.4
1,387,669 - +1.2
1,387,669 - +2.0
1,387,669 - +0.2
1,387,669 - -1.3
1,387,669 - +0.6
1,387,669 - -0.7
1,387,669 - +0.3
1,388,140 - -0.9
1,388,140 - +0.1
1,388,351 + -0.2
1,388,352 - -0.6
1,389,014 + RR42_RS06325 0.75 -0.7
1,389,014 + RR42_RS06325 0.75 -0.2

Or see this region's nucleotide sequence