Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS02325

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS02320 and RR42_RS02325 are separated by 12 nucleotidesRR42_RS02325 and RR42_RS02330 are separated by 34 nucleotides RR42_RS02320: RR42_RS02320 - trehalose phosphatase, at 520,119 to 520,904 _RS02320 RR42_RS02325: RR42_RS02325 - glucoamylase, at 520,917 to 522,755 _RS02325 RR42_RS02330: RR42_RS02330 - trehalose-6-phosphate synthase, at 522,790 to 524,190 _RS02330 Position (kb) 520 521 522 523Strain fitness (log2 ratio) -2 -1 0 1 2at 519.918 kb on - strandat 519.918 kb on - strandat 520.066 kb on + strandat 520.112 kb on + strandat 520.113 kb on - strandat 520.130 kb on - strandat 520.497 kb on + strand, within RR42_RS02320at 520.646 kb on + strand, within RR42_RS02320at 520.697 kb on + strand, within RR42_RS02320at 520.697 kb on + strand, within RR42_RS02320at 520.698 kb on - strand, within RR42_RS02320at 521.169 kb on + strand, within RR42_RS02325at 521.169 kb on + strand, within RR42_RS02325at 521.170 kb on - strand, within RR42_RS02325at 521.235 kb on - strand, within RR42_RS02325at 521.271 kb on + strand, within RR42_RS02325at 521.272 kb on - strand, within RR42_RS02325at 521.406 kb on + strand, within RR42_RS02325at 521.407 kb on - strand, within RR42_RS02325at 521.408 kb on + strand, within RR42_RS02325at 521.457 kb on + strand, within RR42_RS02325at 521.457 kb on + strand, within RR42_RS02325at 521.457 kb on + strand, within RR42_RS02325at 521.457 kb on + strand, within RR42_RS02325at 521.458 kb on - strand, within RR42_RS02325at 521.580 kb on + strand, within RR42_RS02325at 521.580 kb on + strand, within RR42_RS02325at 521.580 kb on + strand, within RR42_RS02325at 521.581 kb on - strand, within RR42_RS02325at 521.651 kb on + strand, within RR42_RS02325at 521.651 kb on + strand, within RR42_RS02325at 521.671 kb on - strand, within RR42_RS02325at 521.671 kb on - strand, within RR42_RS02325at 521.829 kb on + strand, within RR42_RS02325at 521.889 kb on + strand, within RR42_RS02325at 522.010 kb on - strand, within RR42_RS02325at 522.010 kb on - strand, within RR42_RS02325at 522.019 kb on + strand, within RR42_RS02325at 522.019 kb on + strand, within RR42_RS02325at 522.019 kb on + strand, within RR42_RS02325at 522.019 kb on + strand, within RR42_RS02325at 522.085 kb on - strand, within RR42_RS02325at 522.179 kb on + strand, within RR42_RS02325at 522.179 kb on + strand, within RR42_RS02325at 522.179 kb on + strand, within RR42_RS02325at 522.264 kb on + strand, within RR42_RS02325at 522.471 kb on + strand, within RR42_RS02325at 522.471 kb on + strand, within RR42_RS02325at 522.471 kb on + strand, within RR42_RS02325at 522.472 kb on - strand, within RR42_RS02325at 522.472 kb on - strand, within RR42_RS02325at 522.472 kb on - strand, within RR42_RS02325at 522.472 kb on - strand, within RR42_RS02325at 522.473 kb on + strand, within RR42_RS02325at 522.473 kb on + strand, within RR42_RS02325at 522.474 kb on - strand, within RR42_RS02325at 522.474 kb on - strand, within RR42_RS02325at 522.474 kb on - strand, within RR42_RS02325at 522.700 kb on + strandat 522.700 kb on + strandat 522.701 kb on - strandat 522.790 kb on - strandat 522.800 kb on + strandat 522.801 kb on - strandat 523.030 kb on + strand, within RR42_RS02330at 523.034 kb on - strand, within RR42_RS02330at 523.034 kb on - strand, within RR42_RS02330at 523.042 kb on + strand, within RR42_RS02330at 523.075 kb on + strand, within RR42_RS02330at 523.121 kb on - strand, within RR42_RS02330at 523.198 kb on + strand, within RR42_RS02330at 523.269 kb on + strand, within RR42_RS02330at 523.342 kb on + strand, within RR42_RS02330at 523.433 kb on - strand, within RR42_RS02330at 523.540 kb on + strand, within RR42_RS02330at 523.541 kb on - strand, within RR42_RS02330at 523.561 kb on + strand, within RR42_RS02330at 523.562 kb on - strand, within RR42_RS02330at 523.603 kb on + strand, within RR42_RS02330at 523.726 kb on + strand, within RR42_RS02330at 523.727 kb on - strand, within RR42_RS02330

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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519,918 - -0.1
519,918 - +0.1
520,066 + -0.4
520,112 + -0.4
520,113 - +0.8
520,130 - +1.2
520,497 + RR42_RS02320 0.48 -1.6
520,646 + RR42_RS02320 0.67 -1.8
520,697 + RR42_RS02320 0.74 -1.0
520,697 + RR42_RS02320 0.74 -1.3
520,698 - RR42_RS02320 0.74 +0.6
521,169 + RR42_RS02325 0.14 -1.5
521,169 + RR42_RS02325 0.14 +1.0
521,170 - RR42_RS02325 0.14 +1.1
521,235 - RR42_RS02325 0.17 -0.1
521,271 + RR42_RS02325 0.19 -0.3
521,272 - RR42_RS02325 0.19 +0.3
521,406 + RR42_RS02325 0.27 -0.6
521,407 - RR42_RS02325 0.27 -0.3
521,408 + RR42_RS02325 0.27 +0.4
521,457 + RR42_RS02325 0.29 -0.9
521,457 + RR42_RS02325 0.29 +0.7
521,457 + RR42_RS02325 0.29 +0.8
521,457 + RR42_RS02325 0.29 -1.1
521,458 - RR42_RS02325 0.29 -0.2
521,580 + RR42_RS02325 0.36 -0.3
521,580 + RR42_RS02325 0.36 +0.8
521,580 + RR42_RS02325 0.36 -0.9
521,581 - RR42_RS02325 0.36 -0.2
521,651 + RR42_RS02325 0.40 +0.7
521,651 + RR42_RS02325 0.40 +0.0
521,671 - RR42_RS02325 0.41 -0.8
521,671 - RR42_RS02325 0.41 -1.8
521,829 + RR42_RS02325 0.50 +2.2
521,889 + RR42_RS02325 0.53 +2.0
522,010 - RR42_RS02325 0.59 +0.2
522,010 - RR42_RS02325 0.59 +0.0
522,019 + RR42_RS02325 0.60 +0.6
522,019 + RR42_RS02325 0.60 +0.4
522,019 + RR42_RS02325 0.60 -0.5
522,019 + RR42_RS02325 0.60 +1.0
522,085 - RR42_RS02325 0.64 +0.9
522,179 + RR42_RS02325 0.69 -0.2
522,179 + RR42_RS02325 0.69 +1.4
522,179 + RR42_RS02325 0.69 +0.2
522,264 + RR42_RS02325 0.73 -0.2
522,471 + RR42_RS02325 0.85 +0.9
522,471 + RR42_RS02325 0.85 -1.0
522,471 + RR42_RS02325 0.85 +1.0
522,472 - RR42_RS02325 0.85 +1.5
522,472 - RR42_RS02325 0.85 -1.3
522,472 - RR42_RS02325 0.85 +0.2
522,472 - RR42_RS02325 0.85 -0.1
522,473 + RR42_RS02325 0.85 -1.3
522,473 + RR42_RS02325 0.85 -0.2
522,474 - RR42_RS02325 0.85 -0.4
522,474 - RR42_RS02325 0.85 -0.3
522,474 - RR42_RS02325 0.85 +0.6
522,700 + +0.5
522,700 + -0.1
522,701 - +0.1
522,790 - +0.4
522,800 + +0.9
522,801 - -0.4
523,030 + RR42_RS02330 0.17 +0.7
523,034 - RR42_RS02330 0.17 +0.8
523,034 - RR42_RS02330 0.17 +0.2
523,042 + RR42_RS02330 0.18 -0.8
523,075 + RR42_RS02330 0.20 +0.9
523,121 - RR42_RS02330 0.24 +0.0
523,198 + RR42_RS02330 0.29 -0.6
523,269 + RR42_RS02330 0.34 +0.1
523,342 + RR42_RS02330 0.39 +0.0
523,433 - RR42_RS02330 0.46 +0.1
523,540 + RR42_RS02330 0.54 -0.3
523,541 - RR42_RS02330 0.54 -0.2
523,561 + RR42_RS02330 0.55 -1.3
523,562 - RR42_RS02330 0.55 -0.2
523,603 + RR42_RS02330 0.58 -0.5
523,726 + RR42_RS02330 0.67 -0.2
523,727 - RR42_RS02330 0.67 -0.8

Or see this region's nucleotide sequence