Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS01955

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS01950 and RR42_RS01955 are separated by 85 nucleotidesRR42_RS01955 and RR42_RS01960 are separated by 362 nucleotides RR42_RS01950: RR42_RS01950 - nitrate ABC transporter permease, at 436,702 to 437,640 _RS01950 RR42_RS01955: RR42_RS01955 - nitrate transporter, at 437,726 to 439,045 _RS01955 RR42_RS01960: RR42_RS01960 - transcriptional regulator, at 439,408 to 440,061 _RS01960 Position (kb) 437 438 439 440Strain fitness (log2 ratio) -2 -1 0 1at 436.893 kb on + strand, within RR42_RS01950at 436.925 kb on + strand, within RR42_RS01950at 436.925 kb on + strand, within RR42_RS01950at 436.925 kb on + strand, within RR42_RS01950at 436.925 kb on + strand, within RR42_RS01950at 436.925 kb on + strand, within RR42_RS01950at 436.926 kb on - strand, within RR42_RS01950at 436.926 kb on - strand, within RR42_RS01950at 436.926 kb on - strand, within RR42_RS01950at 436.926 kb on - strand, within RR42_RS01950at 436.926 kb on - strand, within RR42_RS01950at 436.926 kb on - strand, within RR42_RS01950at 436.957 kb on - strand, within RR42_RS01950at 437.003 kb on + strand, within RR42_RS01950at 437.003 kb on + strand, within RR42_RS01950at 437.003 kb on + strand, within RR42_RS01950at 437.003 kb on + strand, within RR42_RS01950at 437.003 kb on + strand, within RR42_RS01950at 437.004 kb on - strand, within RR42_RS01950at 437.004 kb on - strand, within RR42_RS01950at 437.073 kb on + strand, within RR42_RS01950at 437.074 kb on - strand, within RR42_RS01950at 437.319 kb on - strand, within RR42_RS01950at 437.434 kb on + strand, within RR42_RS01950at 437.862 kb on + strand, within RR42_RS01955at 437.863 kb on - strand, within RR42_RS01955at 437.863 kb on - strand, within RR42_RS01955at 437.863 kb on - strand, within RR42_RS01955at 437.901 kb on + strand, within RR42_RS01955at 437.902 kb on - strand, within RR42_RS01955at 437.976 kb on + strand, within RR42_RS01955at 437.976 kb on + strand, within RR42_RS01955at 437.977 kb on - strand, within RR42_RS01955at 437.997 kb on + strand, within RR42_RS01955at 437.997 kb on + strand, within RR42_RS01955at 437.997 kb on + strand, within RR42_RS01955at 437.997 kb on + strand, within RR42_RS01955at 438.046 kb on + strand, within RR42_RS01955at 438.047 kb on - strand, within RR42_RS01955at 438.096 kb on + strand, within RR42_RS01955at 438.096 kb on + strand, within RR42_RS01955at 438.096 kb on + strand, within RR42_RS01955at 438.096 kb on + strand, within RR42_RS01955at 438.096 kb on + strand, within RR42_RS01955at 438.096 kb on + strand, within RR42_RS01955at 438.156 kb on + strand, within RR42_RS01955at 438.156 kb on + strand, within RR42_RS01955at 438.157 kb on - strand, within RR42_RS01955at 438.207 kb on + strand, within RR42_RS01955at 438.444 kb on + strand, within RR42_RS01955at 438.445 kb on - strand, within RR42_RS01955at 438.447 kb on + strand, within RR42_RS01955at 438.447 kb on + strand, within RR42_RS01955at 438.447 kb on + strand, within RR42_RS01955at 438.447 kb on + strand, within RR42_RS01955at 438.447 kb on + strand, within RR42_RS01955at 438.447 kb on + strand, within RR42_RS01955at 438.447 kb on + strand, within RR42_RS01955at 438.448 kb on - strand, within RR42_RS01955at 438.495 kb on + strand, within RR42_RS01955at 438.657 kb on + strand, within RR42_RS01955at 438.657 kb on + strand, within RR42_RS01955at 438.657 kb on + strand, within RR42_RS01955at 438.657 kb on + strand, within RR42_RS01955at 438.657 kb on + strand, within RR42_RS01955at 438.658 kb on - strand, within RR42_RS01955at 438.658 kb on - strand, within RR42_RS01955at 438.658 kb on - strand, within RR42_RS01955at 438.658 kb on - strand, within RR42_RS01955at 438.658 kb on - strand, within RR42_RS01955at 438.658 kb on - strand, within RR42_RS01955at 438.670 kb on - strand, within RR42_RS01955at 438.762 kb on + strand, within RR42_RS01955at 438.762 kb on + strand, within RR42_RS01955at 438.763 kb on - strand, within RR42_RS01955at 438.763 kb on - strand, within RR42_RS01955at 438.763 kb on - strand, within RR42_RS01955at 438.763 kb on - strand, within RR42_RS01955at 438.763 kb on - strand, within RR42_RS01955at 438.887 kb on + strand, within RR42_RS01955at 439.167 kb on + strandat 439.168 kb on - strandat 439.168 kb on - strandat 439.409 kb on + strandat 439.409 kb on + strandat 439.410 kb on - strandat 439.490 kb on + strand, within RR42_RS01960at 439.490 kb on + strand, within RR42_RS01960at 439.490 kb on + strand, within RR42_RS01960at 439.490 kb on + strand, within RR42_RS01960at 439.490 kb on + strand, within RR42_RS01960at 439.491 kb on - strand, within RR42_RS01960at 439.491 kb on - strand, within RR42_RS01960at 439.625 kb on + strand, within RR42_RS01960at 439.679 kb on + strand, within RR42_RS01960at 439.679 kb on + strand, within RR42_RS01960at 439.680 kb on - strand, within RR42_RS01960at 439.680 kb on - strand, within RR42_RS01960

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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436,893 + RR42_RS01950 0.20 +0.2
436,925 + RR42_RS01950 0.24 +0.9
436,925 + RR42_RS01950 0.24 +0.6
436,925 + RR42_RS01950 0.24 -0.2
436,925 + RR42_RS01950 0.24 -0.5
436,925 + RR42_RS01950 0.24 -2.0
436,926 - RR42_RS01950 0.24 +0.3
436,926 - RR42_RS01950 0.24 +1.2
436,926 - RR42_RS01950 0.24 -0.1
436,926 - RR42_RS01950 0.24 -0.3
436,926 - RR42_RS01950 0.24 +0.3
436,926 - RR42_RS01950 0.24 -0.9
436,957 - RR42_RS01950 0.27 +0.1
437,003 + RR42_RS01950 0.32 +0.6
437,003 + RR42_RS01950 0.32 -0.1
437,003 + RR42_RS01950 0.32 +0.1
437,003 + RR42_RS01950 0.32 +0.0
437,003 + RR42_RS01950 0.32 -0.9
437,004 - RR42_RS01950 0.32 +0.9
437,004 - RR42_RS01950 0.32 -0.4
437,073 + RR42_RS01950 0.40 +0.0
437,074 - RR42_RS01950 0.40 +1.1
437,319 - RR42_RS01950 0.66 +1.0
437,434 + RR42_RS01950 0.78 -0.1
437,862 + RR42_RS01955 0.10 +1.0
437,863 - RR42_RS01955 0.10 -1.0
437,863 - RR42_RS01955 0.10 -0.5
437,863 - RR42_RS01955 0.10 +0.1
437,901 + RR42_RS01955 0.13 -1.7
437,902 - RR42_RS01955 0.13 -0.4
437,976 + RR42_RS01955 0.19 -1.0
437,976 + RR42_RS01955 0.19 -0.4
437,977 - RR42_RS01955 0.19 -1.3
437,997 + RR42_RS01955 0.21 -0.9
437,997 + RR42_RS01955 0.21 -0.3
437,997 + RR42_RS01955 0.21 +0.1
437,997 + RR42_RS01955 0.21 +0.2
438,046 + RR42_RS01955 0.24 +0.4
438,047 - RR42_RS01955 0.24 +0.2
438,096 + RR42_RS01955 0.28 +1.4
438,096 + RR42_RS01955 0.28 -0.4
438,096 + RR42_RS01955 0.28 -2.3
438,096 + RR42_RS01955 0.28 -0.5
438,096 + RR42_RS01955 0.28 -0.8
438,096 + RR42_RS01955 0.28 -1.0
438,156 + RR42_RS01955 0.33 +0.8
438,156 + RR42_RS01955 0.33 +0.5
438,157 - RR42_RS01955 0.33 +1.3
438,207 + RR42_RS01955 0.36 +0.7
438,444 + RR42_RS01955 0.54 -1.9
438,445 - RR42_RS01955 0.54 +0.5
438,447 + RR42_RS01955 0.55 +1.3
438,447 + RR42_RS01955 0.55 -0.4
438,447 + RR42_RS01955 0.55 -0.1
438,447 + RR42_RS01955 0.55 +0.3
438,447 + RR42_RS01955 0.55 -0.1
438,447 + RR42_RS01955 0.55 +0.3
438,447 + RR42_RS01955 0.55 -0.7
438,448 - RR42_RS01955 0.55 -0.1
438,495 + RR42_RS01955 0.58 +0.8
438,657 + RR42_RS01955 0.71 +0.0
438,657 + RR42_RS01955 0.71 -1.0
438,657 + RR42_RS01955 0.71 -0.6
438,657 + RR42_RS01955 0.71 +1.3
438,657 + RR42_RS01955 0.71 -0.2
438,658 - RR42_RS01955 0.71 +0.1
438,658 - RR42_RS01955 0.71 -0.4
438,658 - RR42_RS01955 0.71 +0.6
438,658 - RR42_RS01955 0.71 -0.7
438,658 - RR42_RS01955 0.71 -1.0
438,658 - RR42_RS01955 0.71 +1.4
438,670 - RR42_RS01955 0.72 +0.7
438,762 + RR42_RS01955 0.78 -0.1
438,762 + RR42_RS01955 0.78 -0.1
438,763 - RR42_RS01955 0.79 -1.3
438,763 - RR42_RS01955 0.79 -1.2
438,763 - RR42_RS01955 0.79 +0.1
438,763 - RR42_RS01955 0.79 -1.3
438,763 - RR42_RS01955 0.79 +0.8
438,887 + RR42_RS01955 0.88 -0.4
439,167 + +0.5
439,168 - +0.3
439,168 - -2.2
439,409 + -0.5
439,409 + +0.1
439,410 - -0.5
439,490 + RR42_RS01960 0.13 -1.5
439,490 + RR42_RS01960 0.13 -0.0
439,490 + RR42_RS01960 0.13 -1.0
439,490 + RR42_RS01960 0.13 -0.6
439,490 + RR42_RS01960 0.13 -1.9
439,491 - RR42_RS01960 0.13 +0.7
439,491 - RR42_RS01960 0.13 -0.1
439,625 + RR42_RS01960 0.33 +0.1
439,679 + RR42_RS01960 0.41 -0.0
439,679 + RR42_RS01960 0.41 -0.1
439,680 - RR42_RS01960 0.42 -0.3
439,680 - RR42_RS01960 0.42 -0.3

Or see this region's nucleotide sequence