Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS00845

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS00835 and RR42_RS00840 are separated by 168 nucleotidesRR42_RS00840 and RR42_RS00845 overlap by 4 nucleotidesRR42_RS00845 and RR42_RS00850 overlap by 4 nucleotidesRR42_RS00850 and RR42_RS00855 are separated by 532 nucleotides RR42_RS00835: RR42_RS00835 - DSBA oxidoreductase, at 204,284 to 204,922 _RS00835 RR42_RS00840: RR42_RS00840 - short-chain dehydrogenase, at 205,091 to 205,903 _RS00840 RR42_RS00845: RR42_RS00845 - metal ABC transporter substrate-binding protein, at 205,900 to 206,736 _RS00845 RR42_RS00850: RR42_RS00850 - hypothetical protein, at 206,733 to 206,993 _RS00850 RR42_RS00855: RR42_RS00855 - Zn-dependent hydrolase, at 207,526 to 208,599 _RS00855 Position (kb) 205 206 207Strain fitness (log2 ratio) -2 -1 0 1at 204.921 kb on - strandat 204.921 kb on - strandat 205.157 kb on + strandat 205.158 kb on - strandat 205.562 kb on + strand, within RR42_RS00840at 205.563 kb on - strand, within RR42_RS00840at 205.832 kb on + strandat 206.135 kb on + strand, within RR42_RS00845at 206.327 kb on + strand, within RR42_RS00845at 206.327 kb on + strand, within RR42_RS00845at 206.327 kb on + strand, within RR42_RS00845at 206.328 kb on - strand, within RR42_RS00845at 206.328 kb on - strand, within RR42_RS00845at 206.328 kb on - strand, within RR42_RS00845at 206.328 kb on - strand, within RR42_RS00845at 206.328 kb on - strand, within RR42_RS00845at 206.328 kb on - strand, within RR42_RS00845at 206.362 kb on + strand, within RR42_RS00845at 206.362 kb on + strand, within RR42_RS00845at 206.362 kb on + strand, within RR42_RS00845at 206.362 kb on + strand, within RR42_RS00845at 206.363 kb on - strand, within RR42_RS00845at 206.363 kb on - strand, within RR42_RS00845at 206.407 kb on + strand, within RR42_RS00845at 206.407 kb on + strand, within RR42_RS00845at 206.407 kb on + strand, within RR42_RS00845at 206.407 kb on + strand, within RR42_RS00845at 206.407 kb on + strand, within RR42_RS00845at 206.407 kb on + strand, within RR42_RS00845at 206.407 kb on + strand, within RR42_RS00845at 206.407 kb on + strand, within RR42_RS00845at 206.407 kb on + strand, within RR42_RS00845at 206.408 kb on - strand, within RR42_RS00845at 206.408 kb on - strand, within RR42_RS00845at 206.408 kb on - strand, within RR42_RS00845at 206.408 kb on - strand, within RR42_RS00845at 206.408 kb on - strand, within RR42_RS00845at 206.408 kb on - strand, within RR42_RS00845at 206.408 kb on - strand, within RR42_RS00845at 206.408 kb on - strand, within RR42_RS00845at 206.409 kb on + strand, within RR42_RS00845at 206.410 kb on - strand, within RR42_RS00845at 206.506 kb on - strand, within RR42_RS00845at 206.544 kb on + strand, within RR42_RS00845at 206.544 kb on + strand, within RR42_RS00845at 206.590 kb on + strand, within RR42_RS00845at 206.707 kb on + strandat 206.707 kb on + strandat 206.707 kb on + strandat 206.708 kb on - strandat 206.708 kb on - strandat 206.708 kb on - strandat 206.734 kb on + strandat 207.534 kb on + strandat 207.541 kb on - strandat 207.643 kb on - strand, within RR42_RS00855at 207.688 kb on - strand, within RR42_RS00855

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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204,921 - +0.5
204,921 - +0.1
205,157 + -0.6
205,158 - +0.2
205,562 + RR42_RS00840 0.58 +0.5
205,563 - RR42_RS00840 0.58 +0.8
205,832 + +0.5
206,135 + RR42_RS00845 0.28 +0.3
206,327 + RR42_RS00845 0.51 +1.3
206,327 + RR42_RS00845 0.51 -0.7
206,327 + RR42_RS00845 0.51 -1.7
206,328 - RR42_RS00845 0.51 +0.6
206,328 - RR42_RS00845 0.51 +0.2
206,328 - RR42_RS00845 0.51 +0.7
206,328 - RR42_RS00845 0.51 +0.6
206,328 - RR42_RS00845 0.51 -1.9
206,328 - RR42_RS00845 0.51 +0.5
206,362 + RR42_RS00845 0.55 +1.1
206,362 + RR42_RS00845 0.55 +0.4
206,362 + RR42_RS00845 0.55 -0.7
206,362 + RR42_RS00845 0.55 +1.3
206,363 - RR42_RS00845 0.55 -1.5
206,363 - RR42_RS00845 0.55 +1.2
206,407 + RR42_RS00845 0.61 +0.3
206,407 + RR42_RS00845 0.61 +1.0
206,407 + RR42_RS00845 0.61 -0.1
206,407 + RR42_RS00845 0.61 -0.0
206,407 + RR42_RS00845 0.61 -0.5
206,407 + RR42_RS00845 0.61 +0.1
206,407 + RR42_RS00845 0.61 -0.3
206,407 + RR42_RS00845 0.61 +0.8
206,407 + RR42_RS00845 0.61 -0.8
206,408 - RR42_RS00845 0.61 -0.5
206,408 - RR42_RS00845 0.61 -0.0
206,408 - RR42_RS00845 0.61 +1.3
206,408 - RR42_RS00845 0.61 +0.5
206,408 - RR42_RS00845 0.61 -0.5
206,408 - RR42_RS00845 0.61 +0.3
206,408 - RR42_RS00845 0.61 +1.2
206,408 - RR42_RS00845 0.61 +0.4
206,409 + RR42_RS00845 0.61 -0.7
206,410 - RR42_RS00845 0.61 +0.0
206,506 - RR42_RS00845 0.72 -0.1
206,544 + RR42_RS00845 0.77 +0.1
206,544 + RR42_RS00845 0.77 +0.9
206,590 + RR42_RS00845 0.82 -1.0
206,707 + +1.3
206,707 + +0.9
206,707 + -0.4
206,708 - -0.1
206,708 - -0.2
206,708 - -0.3
206,734 + -0.9
207,534 + +0.0
207,541 - +0.3
207,643 - RR42_RS00855 0.11 +0.3
207,688 - RR42_RS00855 0.15 +0.5

Or see this region's nucleotide sequence