Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_990

Experiment: Spectinomycin 0.05 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.05 mg/ml
1,120,899	+		Pf1N1B4_989	0.42	+0.1
1,120,899	+		Pf1N1B4_989	0.42	-1.2
1,120,900	-		Pf1N1B4_989	0.42	+2.1
1,120,900	-		Pf1N1B4_989	0.42	+0.2
1,121,046	+		Pf1N1B4_989	0.55	-1.7
1,121,046	+		Pf1N1B4_989	0.55	+0.5
1,121,124	+		Pf1N1B4_989	0.62	+0.1
1,121,124	+		Pf1N1B4_989	0.62	-2.0
1,121,124	+		Pf1N1B4_989	0.62	+0.7
1,121,124	+		Pf1N1B4_989	0.62	+0.9
1,121,124	+		Pf1N1B4_989	0.62	-1.3
1,121,124	+		Pf1N1B4_989	0.62	+0.1
1,121,125	-		Pf1N1B4_989	0.62	+0.8
1,121,202	+		Pf1N1B4_989	0.69	-1.0
1,121,211	+		Pf1N1B4_989	0.70	+0.4
1,121,211	+		Pf1N1B4_989	0.70	-0.4
1,121,211	+		Pf1N1B4_989	0.70	+0.1
1,121,211	+		Pf1N1B4_989	0.70	+0.8
1,121,211	+		Pf1N1B4_989	0.70	-2.7
1,121,211	+		Pf1N1B4_989	0.70	-0.3
1,121,212	-		Pf1N1B4_989	0.70	+1.5
1,121,212	-		Pf1N1B4_989	0.70	-0.9
1,121,212	-		Pf1N1B4_989	0.70	-1.9
1,121,212	-		Pf1N1B4_989	0.70	-1.5
1,121,360	+		Pf1N1B4_989	0.83	-0.6
1,121,360	+		Pf1N1B4_989	0.83	+0.5
1,121,430	+		Pf1N1B4_989	0.89	-0.3
1,121,430	+		Pf1N1B4_989	0.89	-1.2
1,121,430	+		Pf1N1B4_989	0.89	+0.3
1,121,431	-		Pf1N1B4_989	0.89	+1.5
1,121,431	-		Pf1N1B4_989	0.89	+1.1
1,121,431	-		Pf1N1B4_989	0.89	+0.1
1,121,431	-		Pf1N1B4_989	0.89	-2.0
1,121,518	-				+0.6
1,121,554	-				-0.9
1,121,672	+				-0.7
1,121,672	+				+0.8
1,121,673	-				-0.8
1,121,749	+				+1.5
1,121,749	+				-2.0
1,121,749	+				-0.5
1,121,750	-				+0.9
1,121,750	-				+0.8
1,121,750	-				+1.7
1,121,802	+				+0.1
1,121,802	+				+0.3
1,121,802	+				-2.0
1,121,802	+				+0.3
1,121,802	+				-1.7
1,121,803	-				+0.5
1,121,803	-				+2.4
1,121,803	-				-0.3
1,121,803	-				-0.3
1,121,805	+				+1.1
1,121,806	-				+0.5
1,121,806	-				-1.2
1,121,806	-				+0.4
1,121,806	-				-1.9
1,121,806	-				+0.5
1,121,806	-				-1.0
1,121,806	-				+1.1
1,121,806	-				+0.7
1,121,853	+				-0.2
1,121,853	+				+0.7
1,121,853	+				+0.7
1,121,853	+				+0.5
1,121,853	+				+1.7
1,121,854	-				-0.5
1,121,854	-				+4.1
1,121,854	-				+0.1
1,121,854	-				+0.4
1,121,854	-				+0.4
1,121,863	-				-0.7
1,121,863	-				-1.3
1,121,919	+		Pf1N1B4_990	0.11	+0.3
1,121,919	+		Pf1N1B4_990	0.11	-1.0
1,121,920	-		Pf1N1B4_990	0.11	+0.3
1,122,028	-		Pf1N1B4_990	0.18	-1.5
1,122,129	+		Pf1N1B4_990	0.25	+1.1
1,122,129	+		Pf1N1B4_990	0.25	+2.3
1,122,130	-		Pf1N1B4_990	0.25	+0.0
1,122,130	-		Pf1N1B4_990	0.25	-0.4
1,122,130	-		Pf1N1B4_990	0.25	+0.5
1,122,150	+		Pf1N1B4_990	0.26	+0.1
1,122,151	-		Pf1N1B4_990	0.26	+0.0
1,122,151	-		Pf1N1B4_990	0.26	+0.0
1,122,151	-		Pf1N1B4_990	0.26	+0.7
1,122,151	-		Pf1N1B4_990	0.26	+0.9
1,122,151	-		Pf1N1B4_990	0.26	+1.1
1,122,151	-		Pf1N1B4_990	0.26	-1.0
1,122,151	-		Pf1N1B4_990	0.26	+2.5
1,122,151	-		Pf1N1B4_990	0.26	+0.8
1,122,166	-		Pf1N1B4_990	0.27	-0.9
1,122,447	+		Pf1N1B4_990	0.45	+0.9
1,122,448	-				-0.9
1,122,462	+		Pf1N1B4_990	0.46	+0.8
1,122,463	-		Pf1N1B4_990	0.46	+1.0
1,122,463	-		Pf1N1B4_990	0.46	+0.5
1,122,463	-		Pf1N1B4_990	0.46	-2.0
1,122,463	-		Pf1N1B4_990	0.46	+2.1
1,122,463	-		Pf1N1B4_990	0.46	-0.5
1,122,480	+		Pf1N1B4_990	0.47	-1.5
1,122,549	+		Pf1N1B4_990	0.51	-0.5
1,122,549	+		Pf1N1B4_990	0.51	+0.1
1,122,549	+		Pf1N1B4_990	0.51	-0.1
1,122,549	+		Pf1N1B4_990	0.51	+0.8
1,122,549	+		Pf1N1B4_990	0.51	+0.1
1,122,550	-		Pf1N1B4_990	0.51	-1.5
1,122,550	-		Pf1N1B4_990	0.51	-0.6
1,122,550	-		Pf1N1B4_990	0.51	-0.1
1,122,550	-		Pf1N1B4_990	0.51	+1.1
1,122,550	-		Pf1N1B4_990	0.51	-1.1
1,122,618	+		Pf1N1B4_990	0.56	-1.2
1,122,619	-		Pf1N1B4_990	0.56	-1.2
1,122,619	-		Pf1N1B4_990	0.56	-0.6
1,122,619	-		Pf1N1B4_990	0.56	+2.5
1,122,624	+		Pf1N1B4_990	0.56	-0.5
1,122,624	+		Pf1N1B4_990	0.56	-1.5
1,122,624	+		Pf1N1B4_990	0.56	-1.5
1,122,624	+		Pf1N1B4_990	0.56	-1.2
1,122,624	+		Pf1N1B4_990	0.56	+1.8
1,122,624	+		Pf1N1B4_990	0.56	-0.7
1,122,624	+		Pf1N1B4_990	0.56	-0.9
1,122,624	+				-0.9
1,122,624	+		Pf1N1B4_990	0.56	+0.3
1,122,624	+		Pf1N1B4_990	0.56	-1.5
1,122,625	-		Pf1N1B4_990	0.56	+0.3
1,122,625	-		Pf1N1B4_990	0.56	+0.1
1,122,625	-				-0.5
1,122,625	-		Pf1N1B4_990	0.56	-1.2
1,122,625	-		Pf1N1B4_990	0.56	-1.4
1,122,625	-		Pf1N1B4_990	0.56	+0.1
1,122,625	-		Pf1N1B4_990	0.56	+1.1
1,122,625	-		Pf1N1B4_990	0.56	-0.5
1,122,625	-		Pf1N1B4_990	0.56	-0.6
1,122,625	-		Pf1N1B4_990	0.56	-0.9
1,122,625	-		Pf1N1B4_990	0.56	+0.5
1,122,625	-		Pf1N1B4_990	0.56	-1.2
1,122,647	+		Pf1N1B4_990	0.58	-0.5
1,122,648	-		Pf1N1B4_990	0.58	-1.7
1,122,648	-		Pf1N1B4_990	0.58	+0.9
1,122,666	+		Pf1N1B4_990	0.59	-0.8
1,122,726	+		Pf1N1B4_990	0.63	+0.2
1,122,726	+		Pf1N1B4_990	0.63	+1.1
1,122,726	+		Pf1N1B4_990	0.63	-0.5
1,122,726	+		Pf1N1B4_990	0.63	-0.9
1,122,726	+		Pf1N1B4_990	0.63	+0.4
1,122,726	+		Pf1N1B4_990	0.63	-0.9
1,122,727	-		Pf1N1B4_990	0.63	-0.1
1,122,727	-		Pf1N1B4_990	0.63	+1.8
1,122,727	-		Pf1N1B4_990	0.63	-0.6
1,122,727	-		Pf1N1B4_990	0.63	+2.1
1,122,727	-		Pf1N1B4_990	0.63	-1.9
1,122,727	-		Pf1N1B4_990	0.63	-1.2
1,122,897	+		Pf1N1B4_990	0.74	+1.1
1,122,897	+		Pf1N1B4_990	0.74	+1.1
1,122,897	+		Pf1N1B4_990	0.74	-0.5
1,122,897	+		Pf1N1B4_990	0.74	+1.5
1,122,898	-		Pf1N1B4_990	0.74	-0.5
1,122,898	-		Pf1N1B4_990	0.74	-1.5
1,122,898	-		Pf1N1B4_990	0.74	+0.1
1,122,898	-		Pf1N1B4_990	0.74	+0.3
1,122,991	-		Pf1N1B4_990	0.80	+0.3
1,122,991	-		Pf1N1B4_990	0.80	+1.1
1,123,026	+		Pf1N1B4_990	0.82	+0.5
1,123,026	+		Pf1N1B4_990	0.82	-0.3
1,123,027	-		Pf1N1B4_990	0.82	-0.6
1,123,027	-		Pf1N1B4_990	0.82	+0.1
1,123,027	-		Pf1N1B4_990	0.82	-0.7
1,123,155	+				+2.7
1,123,156	-				+1.7
1,123,192	-				-1.9
1,123,296	+				+1.9
1,123,296	+				-0.0
1,123,296	+				-0.5
1,123,296	+				+0.6
1,123,297	-				-1.7
1,123,297	-				+1.4
1,123,297	-				-1.9
1,123,322	-				+0.3
1,123,322	-				-0.0
1,123,322	-				+0.7
1,123,346	+				+0.4
1,123,346	+				+1.1
1,123,346	+				-1.4
1,123,346	+				+0.5
1,123,346	+				-2.5
1,123,346	+				+2.9
1,123,475	+		Pf1N1B4_991	0.13	+0.9
1,123,476	-		Pf1N1B4_991	0.13	-1.0
1,123,589	+		Pf1N1B4_991	0.23	+2.5
1,123,589	+		Pf1N1B4_991	0.23	+1.5
1,123,590	-		Pf1N1B4_991	0.23	-1.1
1,123,590	-		Pf1N1B4_991	0.23	-1.7
1,123,646	+		Pf1N1B4_991	0.28	-1.6
1,123,646	+		Pf1N1B4_991	0.28	-0.2
1,123,646	+		Pf1N1B4_991	0.28	-0.4
1,123,646	+		Pf1N1B4_991	0.28	+0.1
1,123,647	-		Pf1N1B4_991	0.28	+2.7
1,123,647	-		Pf1N1B4_991	0.28	+1.1
1,123,692	+				-0.5
1,123,692	+		Pf1N1B4_991	0.31	-1.3
1,123,692	+		Pf1N1B4_991	0.31	+1.5
1,123,692	+		Pf1N1B4_991	0.31	-2.3
1,123,693	-		Pf1N1B4_991	0.32	-1.9
1,123,693	-		Pf1N1B4_991	0.32	-0.2
1,123,693	-		Pf1N1B4_991	0.32	+0.7
1,123,693	-				-0.9
1,123,693	-		Pf1N1B4_991	0.32	-1.2
1,123,769	-		Pf1N1B4_991	0.38	-0.3
1,123,840	-		Pf1N1B4_991	0.44	-0.4
1,124,189	+		Pf1N1B4_991	0.74	+0.1
1,124,189	+		Pf1N1B4_991	0.74	-0.6
1,124,189	+		Pf1N1B4_991	0.74	+1.4
1,124,189	+		Pf1N1B4_991	0.74	+1.3
1,124,190	-		Pf1N1B4_991	0.74	+1.8
1,124,190	-		Pf1N1B4_991	0.74	+1.1
1,124,300	+		Pf1N1B4_991	0.83	+0.5