Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4718
Experiment: Spectinomycin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Spectinomycin 0.05 mg/ml |
---|---|---|---|---|---|
remove | |||||
5,214,545 | + | Pf1N1B4_4717 | 0.74 | +1.2 | |
5,214,721 | + | -0.5 | |||
5,214,721 | + | +1.1 | |||
5,214,722 | - | -0.2 | |||
5,214,767 | + | +0.5 | |||
5,214,767 | + | +0.5 | |||
5,214,768 | - | +0.8 | |||
5,214,768 | - | -0.3 | |||
5,214,867 | - | -0.0 | |||
5,214,867 | - | -0.3 | |||
5,214,967 | - | -0.5 | |||
5,215,036 | - | +0.2 | |||
5,215,036 | - | +0.7 | |||
5,215,036 | - | +2.2 | |||
5,215,179 | - | +1.5 | |||
5,215,179 | - | Pf1N1B4_4718 | 0.24 | +0.2 | |
5,215,179 | - | Pf1N1B4_4718 | 0.24 | -2.1 | |
5,216,058 | + | Pf1N1B4_4719 | 0.83 | +1.1 | |
5,216,059 | - | Pf1N1B4_4719 | 0.84 | -1.5 | |
5,216,059 | - | Pf1N1B4_4719 | 0.84 | +0.9 | |
5,216,245 | - | +0.5 | |||
5,216,248 | + | -0.7 | |||
5,216,248 | + | +0.8 | |||
5,216,248 | + | -1.1 | |||
5,216,248 | + | +1.0 | |||
5,216,249 | - | +0.2 | |||
5,216,249 | - | +0.5 | |||
5,216,409 | - | Pf1N1B4_4720 | 0.13 | +1.8 | |
5,216,409 | - | Pf1N1B4_4720 | 0.13 | +1.1 | |
5,216,409 | - | +0.9 |
Or see this region's nucleotide sequence