Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3501

Experiment: Spectinomycin 0.05 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.05 mg/ml
3,904,330	-		Pf1N1B4_3500	0.21	+0.9
3,904,330	-		Pf1N1B4_3500	0.21	+0.9
3,904,421	+		Pf1N1B4_3500	0.31	-2.6
3,904,421	+		Pf1N1B4_3500	0.31	-0.6
3,904,421	+		Pf1N1B4_3500	0.31	+0.9
3,904,421	+		Pf1N1B4_3500	0.31	+0.6
3,904,422	-		Pf1N1B4_3500	0.31	+1.2
3,904,737	+		Pf1N1B4_3500	0.63	+0.1
3,904,737	+		Pf1N1B4_3500	0.63	-1.0
3,904,737	+		Pf1N1B4_3500	0.63	-0.1
3,904,737	+		Pf1N1B4_3500	0.63	-0.3
3,904,738	-				-0.1
3,904,809	+		Pf1N1B4_3500	0.70	+1.1
3,904,809	+		Pf1N1B4_3500	0.70	+0.7
3,904,810	-		Pf1N1B4_3500	0.70	-0.0
3,904,929	-		Pf1N1B4_3500	0.82	-1.4
3,905,076	+				+1.2
3,905,077	-				+0.9
3,905,125	+				+0.6
3,905,125	+				-2.4
3,905,126	-				-0.3
3,905,126	-				-0.1
3,905,132	-				-1.3
3,905,219	-				-0.1
3,905,273	+				+1.5
3,905,295	+				+0.6
3,905,607	+		Pf1N1B4_3501	0.11	-2.3
3,905,607	+				+0.9
3,905,608	-		Pf1N1B4_3501	0.11	-0.2
3,905,608	-		Pf1N1B4_3501	0.11	-0.7
3,905,608	-		Pf1N1B4_3501	0.11	-1.1
3,905,752	+		Pf1N1B4_3501	0.16	+0.9
3,905,752	+		Pf1N1B4_3501	0.16	-2.1
3,905,753	-		Pf1N1B4_3501	0.16	-0.1
3,905,753	-		Pf1N1B4_3501	0.16	-0.6
3,905,753	-		Pf1N1B4_3501	0.16	+0.2
3,905,753	-				+0.9
3,906,266	+		Pf1N1B4_3501	0.35	-1.2
3,906,266	+				+1.2
3,906,266	+		Pf1N1B4_3501	0.35	-0.1
3,906,266	+		Pf1N1B4_3501	0.35	-1.8
3,906,267	-				-0.9
3,906,267	-		Pf1N1B4_3501	0.35	-0.1
3,906,267	-		Pf1N1B4_3501	0.35	-2.8
3,906,766	+		Pf1N1B4_3501	0.53	-1.4
3,906,767	-		Pf1N1B4_3501	0.53	-1.9
3,906,767	-		Pf1N1B4_3501	0.53	-2.1
3,906,767	-		Pf1N1B4_3501	0.53	+0.2
3,906,767	-		Pf1N1B4_3501	0.53	-0.4
3,906,767	-		Pf1N1B4_3501	0.53	-1.7
3,906,767	-		Pf1N1B4_3501	0.53	+0.3
3,906,767	-		Pf1N1B4_3501	0.53	-1.7
3,906,767	-				-0.7
3,906,891	-		Pf1N1B4_3501	0.58	-0.8
3,907,093	+		Pf1N1B4_3501	0.65	-1.9
3,907,093	+		Pf1N1B4_3501	0.65	+0.1
3,907,094	-		Pf1N1B4_3501	0.65	+0.2
3,907,973	-				-0.9
3,908,037	-				-0.1
3,908,037	-				-0.3
3,908,037	-				-1.1
3,908,037	-				-0.1
3,908,082	+				-0.3
3,908,339	+				-1.2
3,908,339	+				-0.7
3,908,339	+				+2.2
3,908,339	+				-0.5
3,908,340	-				-0.4
3,908,585	+		Pf1N1B4_3503	0.39	+0.9
3,908,786	-		Pf1N1B4_3503	0.69	-1.7
3,908,786	-		Pf1N1B4_3503	0.69	+0.6
3,908,786	-		Pf1N1B4_3503	0.69	-1.2
3,908,786	-		Pf1N1B4_3503	0.69	-0.3
3,908,811	+		Pf1N1B4_3503	0.72	-0.0
3,908,811	+		Pf1N1B4_3503	0.72	+0.3
3,908,811	+		Pf1N1B4_3503	0.72	+0.4
3,908,811	+				+0.3
3,908,812	-				+0.3
3,908,812	-		Pf1N1B4_3503	0.72	-1.1
3,908,812	-		Pf1N1B4_3503	0.72	+0.5
3,908,812	-		Pf1N1B4_3503	0.72	+0.7
3,908,841	+		Pf1N1B4_3503	0.77	-0.7
3,908,841	+		Pf1N1B4_3503	0.77	-1.1
3,908,945	-				-0.4
3,908,963	+				-1.2
3,908,967	+				-0.5
3,908,967	+				-0.4
3,908,967	+				-0.4
3,908,967	+				+1.2
3,908,968	-				+0.1
3,908,968	-				-1.4