Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3454

Experiment: Spectinomycin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5223 and Pf1N1B4_3453 are separated by 22 nucleotidesPf1N1B4_3453 and Pf1N1B4_3454 are separated by 660 nucleotidesPf1N1B4_3454 and Pf1N1B4_3455 are separated by 198 nucleotidesPf1N1B4_3455 and Pf1N1B4_3456 are separated by 411 nucleotides Pf1N1B4_5223 - tRNA-Arg-ACG, at 3,850,562 to 3,850,635 _5223 Pf1N1B4_3453 - hypothetical protein, at 3,850,658 to 3,850,834 _3453 Pf1N1B4_3454 - Mg/Co/Ni transporter MgtE / CBS domain, at 3,851,495 to 3,852,937 _3454 Pf1N1B4_3455 - Alginate biosynthesis transcriptional activator, at 3,853,136 to 3,853,462 _3455 Pf1N1B4_3456 - ATP-binding protein PhnN; Guanylate kinase (EC 2.7.4.8), at 3,853,874 to 3,854,422 _3456 Position (kb) 3851 3852 3853Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3850.547 kb on + strandat 3850.549 kb on + strandat 3850.549 kb on + strandat 3850.802 kb on - strand, within Pf1N1B4_3453at 3851.018 kb on + strandat 3851.019 kb on - strandat 3851.019 kb on - strandat 3851.019 kb on - strandat 3851.019 kb on - strandat 3851.019 kb on - strandat 3851.050 kb on + strandat 3851.051 kb on - strandat 3851.051 kb on - strandat 3851.154 kb on + strandat 3851.207 kb on - strandat 3851.207 kb on - strandat 3851.214 kb on - strandat 3851.214 kb on - strandat 3851.214 kb on - strandat 3851.214 kb on - strandat 3851.350 kb on + strandat 3851.388 kb on + strandat 3851.410 kb on - strandat 3851.431 kb on + strandat 3851.432 kb on - strandat 3851.441 kb on + strandat 3851.442 kb on - strandat 3851.494 kb on + strandat 3851.495 kb on - strandat 3851.705 kb on + strand, within Pf1N1B4_3454at 3851.705 kb on + strand, within Pf1N1B4_3454at 3851.705 kb on + strand, within Pf1N1B4_3454at 3851.705 kb on + strand, within Pf1N1B4_3454at 3851.706 kb on - strand, within Pf1N1B4_3454at 3851.706 kb on - strand, within Pf1N1B4_3454at 3851.793 kb on + strand, within Pf1N1B4_3454at 3851.793 kb on + strand, within Pf1N1B4_3454at 3851.794 kb on - strand, within Pf1N1B4_3454at 3851.978 kb on + strand, within Pf1N1B4_3454at 3851.978 kb on + strand, within Pf1N1B4_3454at 3852.025 kb on + strand, within Pf1N1B4_3454at 3852.239 kb on + strand, within Pf1N1B4_3454at 3852.240 kb on - strand, within Pf1N1B4_3454at 3852.240 kb on - strand, within Pf1N1B4_3454at 3852.266 kb on + strand, within Pf1N1B4_3454at 3852.640 kb on + strand, within Pf1N1B4_3454at 3852.640 kb on + strand, within Pf1N1B4_3454at 3852.640 kb on + strand, within Pf1N1B4_3454at 3852.640 kb on + strand, within Pf1N1B4_3454at 3852.640 kb on + strand, within Pf1N1B4_3454at 3852.640 kb on + strand, within Pf1N1B4_3454at 3852.722 kb on + strand, within Pf1N1B4_3454at 3852.731 kb on + strand, within Pf1N1B4_3454at 3852.778 kb on + strand, within Pf1N1B4_3454at 3852.778 kb on + strand, within Pf1N1B4_3454at 3852.778 kb on + strandat 3852.778 kb on + strand, within Pf1N1B4_3454at 3853.013 kb on + strandat 3853.110 kb on - strandat 3853.110 kb on - strandat 3853.110 kb on - strandat 3853.110 kb on - strandat 3853.307 kb on - strand, within Pf1N1B4_3455at 3853.407 kb on - strand, within Pf1N1B4_3455at 3853.438 kb on - strandat 3853.438 kb on - strandat 3853.463 kb on - strandat 3853.465 kb on - strandat 3853.520 kb on + strandat 3853.559 kb on + strandat 3853.617 kb on + strandat 3853.617 kb on + strandat 3853.618 kb on - strandat 3853.618 kb on - strandat 3853.618 kb on - strandat 3853.618 kb on - strandat 3853.618 kb on - strandat 3853.618 kb on - strandat 3853.637 kb on + strandat 3853.650 kb on + strandat 3853.650 kb on + strandat 3853.650 kb on + strandat 3853.650 kb on + strandat 3853.680 kb on + strandat 3853.680 kb on + strandat 3853.757 kb on + strandat 3853.757 kb on + strandat 3853.757 kb on + strandat 3853.757 kb on + strandat 3853.758 kb on - strandat 3853.781 kb on + strandat 3853.786 kb on + strandat 3853.786 kb on + strandat 3853.787 kb on - strandat 3853.788 kb on + strandat 3853.788 kb on + strandat 3853.788 kb on + strandat 3853.788 kb on + strandat 3853.788 kb on + strandat 3853.788 kb on + strandat 3853.788 kb on + strandat 3853.789 kb on - strandat 3853.789 kb on - strandat 3853.789 kb on - strandat 3853.789 kb on - strandat 3853.814 kb on + strandat 3853.814 kb on + strandat 3853.814 kb on + strandat 3853.815 kb on - strandat 3853.815 kb on - strandat 3853.818 kb on - strandat 3853.829 kb on - strandat 3853.863 kb on + strandat 3853.868 kb on + strandat 3853.868 kb on + strandat 3853.868 kb on + strandat 3853.868 kb on + strandat 3853.869 kb on - strandat 3853.873 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Spectinomycin 0.05 mg/ml
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3,850,547 + -1.4
3,850,549 + -1.9
3,850,549 + +0.2
3,850,802 - Pf1N1B4_3453 0.81 +0.7
3,851,018 + +1.8
3,851,019 - +0.4
3,851,019 - -1.1
3,851,019 - +0.5
3,851,019 - +0.4
3,851,019 - +2.3
3,851,050 + -1.1
3,851,051 - -0.4
3,851,051 - -0.1
3,851,154 + -0.6
3,851,207 - +0.9
3,851,207 - -0.1
3,851,214 - -0.6
3,851,214 - +1.7
3,851,214 - -1.6
3,851,214 - -1.1
3,851,350 + +0.6
3,851,388 + -1.4
3,851,410 - -0.6
3,851,431 + -0.2
3,851,432 - -1.1
3,851,441 + +0.9
3,851,442 - -0.6
3,851,494 + -1.8
3,851,495 - -0.1
3,851,705 + Pf1N1B4_3454 0.15 +0.1
3,851,705 + Pf1N1B4_3454 0.15 -0.2
3,851,705 + Pf1N1B4_3454 0.15 -2.6
3,851,705 + Pf1N1B4_3454 0.15 -0.5
3,851,706 - Pf1N1B4_3454 0.15 -1.1
3,851,706 - Pf1N1B4_3454 0.15 -0.1
3,851,793 + Pf1N1B4_3454 0.21 +0.9
3,851,793 + Pf1N1B4_3454 0.21 -1.1
3,851,794 - Pf1N1B4_3454 0.21 -1.1
3,851,978 + Pf1N1B4_3454 0.33 -1.4
3,851,978 + Pf1N1B4_3454 0.33 +1.9
3,852,025 + Pf1N1B4_3454 0.37 -2.5
3,852,239 + Pf1N1B4_3454 0.52 -0.9
3,852,240 - Pf1N1B4_3454 0.52 -0.6
3,852,240 - Pf1N1B4_3454 0.52 -1.4
3,852,266 + Pf1N1B4_3454 0.53 -0.6
3,852,640 + Pf1N1B4_3454 0.79 +0.4
3,852,640 + Pf1N1B4_3454 0.79 -0.4
3,852,640 + Pf1N1B4_3454 0.79 +0.9
3,852,640 + Pf1N1B4_3454 0.79 -2.1
3,852,640 + Pf1N1B4_3454 0.79 -1.6
3,852,640 + Pf1N1B4_3454 0.79 -1.4
3,852,722 + Pf1N1B4_3454 0.85 -2.2
3,852,731 + Pf1N1B4_3454 0.86 -2.1
3,852,778 + Pf1N1B4_3454 0.89 -2.1
3,852,778 + Pf1N1B4_3454 0.89 -0.6
3,852,778 + +0.9
3,852,778 + Pf1N1B4_3454 0.89 -0.1
3,853,013 + +1.7
3,853,110 - -1.0
3,853,110 - +0.3
3,853,110 - +0.7
3,853,110 - +0.9
3,853,307 - Pf1N1B4_3455 0.52 +0.4
3,853,407 - Pf1N1B4_3455 0.83 -2.5
3,853,438 - -1.6
3,853,438 - -4.5
3,853,463 - -2.1
3,853,465 - -2.1
3,853,520 + -0.1
3,853,559 + +0.9
3,853,617 + -0.5
3,853,617 + -0.3
3,853,618 - +0.2
3,853,618 - -0.4
3,853,618 - +0.4
3,853,618 - +1.4
3,853,618 - +0.3
3,853,618 - +0.7
3,853,637 + +0.9
3,853,650 + -0.8
3,853,650 + -0.1
3,853,650 + -0.6
3,853,650 + +0.6
3,853,680 + +0.0
3,853,680 + -0.5
3,853,757 + +1.1
3,853,757 + +0.4
3,853,757 + -0.3
3,853,757 + +1.3
3,853,758 - +0.9
3,853,781 + +0.7
3,853,786 + +0.9
3,853,786 + +0.4
3,853,787 - +0.9
3,853,788 + +0.3
3,853,788 + -1.4
3,853,788 + -1.9
3,853,788 + -1.4
3,853,788 + -1.9
3,853,788 + -1.2
3,853,788 + +0.4
3,853,789 - -1.1
3,853,789 - -0.2
3,853,789 - +1.5
3,853,789 - +0.8
3,853,814 + +0.4
3,853,814 + -0.4
3,853,814 + -0.4
3,853,815 - -1.9
3,853,815 - -1.4
3,853,818 - -0.1
3,853,829 - -1.6
3,853,863 + +1.4
3,853,868 + -0.3
3,853,868 + -0.4
3,853,868 + -0.1
3,853,868 + +0.8
3,853,869 - -0.3
3,853,873 - +0.4

Or see this region's nucleotide sequence