Experiment: Spectinomycin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_3322 and Pf1N1B4_3323 are separated by 557 nucleotides Pf1N1B4_3323 and Pf1N1B4_3324 are separated by 30 nucleotides Pf1N1B4_3324 and Pf1N1B4_3325 are separated by 8 nucleotides
Pf1N1B4_3322 - L-aspartate oxidase (EC 1.4.3.16), at 3,709,341 to 3,710,957
_3322
Pf1N1B4_3323 - RNA polymerase sigma-H factor AlgT, at 3,711,515 to 3,712,096
_3323
Pf1N1B4_3324 - Sigma factor RpoE negative regulatory protein RseA, at 3,712,127 to 3,712,714
_3324
Pf1N1B4_3325 - Sigma factor RpoE negative regulatory protein RseB precursor, at 3,712,723 to 3,713,685
_3325
Position (kb)
3711
3712
3713 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3711.041 kb on + strand at 3711.041 kb on + strand at 3711.044 kb on + strand at 3711.044 kb on + strand at 3711.044 kb on + strand at 3711.044 kb on + strand at 3711.044 kb on + strand at 3711.044 kb on + strand at 3711.044 kb on + strand at 3711.044 kb on + strand at 3711.044 kb on + strand at 3711.044 kb on + strand at 3711.044 kb on + strand at 3711.044 kb on + strand at 3711.044 kb on + strand at 3711.044 kb on + strand at 3711.044 kb on + strand at 3711.046 kb on + strand at 3711.046 kb on + strand at 3711.046 kb on + strand at 3711.046 kb on + strand at 3711.046 kb on + strand at 3711.046 kb on + strand at 3711.046 kb on + strand at 3711.048 kb on + strand at 3711.048 kb on + strand at 3711.048 kb on + strand at 3711.048 kb on + strand at 3711.048 kb on + strand at 3711.097 kb on + strand at 3711.097 kb on + strand at 3711.165 kb on + strand at 3711.165 kb on + strand at 3711.165 kb on + strand at 3711.176 kb on + strand at 3711.176 kb on + strand at 3711.224 kb on + strand at 3711.224 kb on + strand at 3711.226 kb on + strand at 3711.226 kb on + strand at 3711.226 kb on + strand at 3711.230 kb on + strand at 3711.347 kb on + strand at 3712.743 kb on + strand at 3712.931 kb on + strand, within Pf1N1B4_3325
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.05 mg/ml remove 3,711,041 + +1.8 3,711,041 + -0.8 3,711,044 + -2.0 3,711,044 + +0.2 3,711,044 + -0.0 3,711,044 + +2.0 3,711,044 + +1.0 3,711,044 + +2.2 3,711,044 + +0.2 3,711,044 + +2.6 3,711,044 + -0.0 3,711,044 + -0.0 3,711,044 + -1.8 3,711,044 + +1.2 3,711,044 + -1.0 3,711,044 + +1.7 3,711,044 + -0.6 3,711,046 + -0.4 3,711,046 + +0.7 3,711,046 + +0.1 3,711,046 + -2.0 3,711,046 + +1.3 3,711,046 + -0.6 3,711,046 + -0.0 3,711,048 + -0.3 3,711,048 + -0.8 3,711,048 + +1.2 3,711,048 + -0.9 3,711,048 + -0.0 3,711,097 + -0.8 3,711,097 + -0.6 3,711,165 + +1.6 3,711,165 + +1.0 3,711,165 + +1.3 3,711,176 + +2.2 3,711,176 + -0.0 3,711,224 + +0.2 3,711,224 + +0.2 3,711,226 + +2.0 3,711,226 + +0.6 3,711,226 + +0.9 3,711,230 + -0.8 3,711,347 + +0.1 3,712,743 + -0.8 3,712,931 + Pf1N1B4_3325 0.22 +1.1
Or see this region's nucleotide sequence