Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2404

Experiment: Spectinomycin 0.05 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.05 mg/ml
2,721,916	+				+0.4
2,721,916	+				-0.3
2,721,916	+				-1.5
2,722,099	+				-0.6
2,722,099	+		Pf1N1B4_2403	0.51	-0.4
2,722,100	-		Pf1N1B4_2403	0.51	-1.0
2,722,100	-		Pf1N1B4_2403	0.51	-1.2
2,722,100	-		Pf1N1B4_2403	0.51	-0.6
2,722,117	+		Pf1N1B4_2403	0.56	+0.0
2,722,117	+		Pf1N1B4_2403	0.56	+1.6
2,722,117	+		Pf1N1B4_2403	0.56	+0.8
2,722,117	+		Pf1N1B4_2403	0.56	-1.0
2,722,117	+		Pf1N1B4_2403	0.56	+0.0
2,722,118	-				-0.6
2,722,118	-		Pf1N1B4_2403	0.56	+1.4
2,722,118	-		Pf1N1B4_2403	0.56	+0.0
2,722,118	-		Pf1N1B4_2403	0.56	+0.2
2,722,118	-		Pf1N1B4_2403	0.56	+0.8
2,722,118	-		Pf1N1B4_2403	0.56	+0.4
2,722,118	-		Pf1N1B4_2403	0.56	+1.0
2,722,118	-		Pf1N1B4_2403	0.56	+1.0
2,722,118	-		Pf1N1B4_2403	0.56	+0.4
2,722,171	+		Pf1N1B4_2403	0.71	-2.3
2,722,172	-		Pf1N1B4_2403	0.71	-0.8
2,722,172	-		Pf1N1B4_2403	0.71	-0.6
2,722,172	-		Pf1N1B4_2403	0.71	-1.2
2,722,172	-		Pf1N1B4_2403	0.71	-1.0
2,722,172	-		Pf1N1B4_2403	0.71	+0.8
2,722,271	+				-0.4
2,722,272	-				-0.1
2,722,272	-				+0.0
2,722,317	+				-0.2
2,722,318	-				+0.0
2,722,318	-				+0.4
2,722,338	+				-1.3
2,722,339	-				-0.7
2,722,350	+				+1.4
2,722,351	-				-1.0
2,722,402	+				-0.3
2,722,402	+				-0.3
2,722,402	+				-1.0
2,722,402	+				-0.3
2,722,402	+				-0.6
2,722,402	+				-0.8
2,722,402	+				+0.9
2,722,402	+				+0.6
2,722,402	+				-0.5
2,722,403	-				-1.0
2,722,403	-				-0.4
2,722,471	+				+3.8
2,722,474	+				+0.2
2,722,474	+				-0.5
2,722,474	+				+0.4
2,722,474	+				+0.3
2,722,554	+				+0.4
2,722,583	-				+0.7
2,722,583	-				-0.4
2,722,583	-				+0.6
2,722,597	-				-0.0
2,722,612	+				-1.1
2,722,626	+				-1.8
2,722,626	+				-1.2
2,722,626	+				+0.7
2,722,627	-				+0.1
2,722,671	-				-0.6
2,722,671	-				+0.6
2,722,671	-				-1.4
2,722,671	-				-0.1
2,722,671	-				+0.9
2,722,789	-				+0.9
2,722,789	-				+0.6
2,722,840	-				-2.0
2,722,914	+				-0.4
2,722,915	-				-1.8
2,722,915	-				+0.1
2,722,915	-				+1.7
2,722,937	+		Pf1N1B4_2404	0.12	+0.8
2,722,937	+		Pf1N1B4_2404	0.12	+0.0
2,722,938	-		Pf1N1B4_2404	0.12	+0.8
2,722,938	-		Pf1N1B4_2404	0.12	+0.8
2,722,938	-		Pf1N1B4_2404	0.12	-0.9
2,722,955	+		Pf1N1B4_2404	0.14	+1.9
2,722,955	+		Pf1N1B4_2404	0.14	+0.9
2,722,956	-		Pf1N1B4_2404	0.15	+0.6
2,722,956	-		Pf1N1B4_2404	0.15	+0.2
2,722,965	+		Pf1N1B4_2404	0.16	-0.2
2,723,077	+		Pf1N1B4_2404	0.33	+2.4
2,723,078	-		Pf1N1B4_2404	0.33	+1.2
2,723,163	-		Pf1N1B4_2404	0.46	-0.1
2,723,169	+		Pf1N1B4_2404	0.46	-1.7
2,723,169	+		Pf1N1B4_2404	0.46	-0.4
2,723,169	+		Pf1N1B4_2404	0.46	-1.0
2,723,169	+		Pf1N1B4_2404	0.46	+1.4
2,723,169	+		Pf1N1B4_2404	0.46	-2.0
2,723,169	+		Pf1N1B4_2404	0.46	-0.5
2,723,170	-		Pf1N1B4_2404	0.47	+1.2
2,723,171	+		Pf1N1B4_2404	0.47	+1.1
2,723,171	+		Pf1N1B4_2404	0.47	-0.5
2,723,171	+		Pf1N1B4_2404	0.47	-1.1
2,723,171	+		Pf1N1B4_2404	0.47	+0.2
2,723,172	-		Pf1N1B4_2404	0.47	-1.6
2,723,188	+		Pf1N1B4_2404	0.49	-2.1
2,723,188	+		Pf1N1B4_2404	0.49	+0.1
2,723,210	+		Pf1N1B4_2404	0.53	-0.6
2,723,211	-		Pf1N1B4_2404	0.53	+1.4
2,723,252	-		Pf1N1B4_2404	0.59	-0.1
2,723,303	+		Pf1N1B4_2404	0.67	+1.0
2,723,303	+		Pf1N1B4_2404	0.67	+0.6
2,723,304	-		Pf1N1B4_2404	0.67	+0.5
2,723,358	-		Pf1N1B4_2404	0.75	+0.4
2,723,429	+		Pf1N1B4_2404	0.85	+1.0
2,723,429	+		Pf1N1B4_2404	0.85	+0.5
2,723,430	-		Pf1N1B4_2404	0.86	-0.0
2,723,430	-		Pf1N1B4_2404	0.86	+1.4
2,723,430	-		Pf1N1B4_2404	0.86	+0.7
2,723,430	-		Pf1N1B4_2404	0.86	+0.1
2,723,430	-		Pf1N1B4_2404	0.86	-1.0
2,723,430	-		Pf1N1B4_2404	0.86	-0.6
2,723,475	-				+1.4
2,723,475	-				+0.9
2,723,527	-				+1.5
2,723,527	-				+0.8
2,723,550	+				+0.4
2,723,550	+				-1.4
2,723,594	+				+1.0
2,723,594	+				-0.6
2,723,594	+				-1.2
2,723,594	+				+0.4
2,723,595	-				-0.2
2,723,595	-				-1.2
2,723,595	-				+0.9
2,723,595	-				-0.7
2,723,595	-				+1.2
2,723,596	+				-0.7
2,723,597	-				+1.1
2,723,597	-				-0.0
2,723,602	+				+0.6
2,723,602	+				+1.7
2,723,603	-				-1.2
2,723,603	-				-1.4
2,723,691	-				+0.0
2,723,703	+				+0.9
2,723,713	+				+1.9
2,723,714	-				-1.1
2,723,722	+				-0.6
2,723,722	+				+0.2
2,723,772	-				+0.4
2,723,787	+				+0.8
2,723,787	+				-2.9
2,723,787	+				+1.0
2,723,787	+				-0.8
2,723,787	+				-1.0
2,723,787	+				-0.5
2,723,787	+				+1.5
2,723,787	+				-1.2
2,723,788	-				+1.4
2,723,788	-				-1.2
2,723,788	-				-1.6
2,723,859	+				+0.2
2,723,859	+				+0.4
2,723,859	+				-0.5
2,723,859	+				+0.2
2,723,860	-				-0.2
2,723,860	-				-0.0
2,723,860	-				-0.6
2,723,860	-				+0.6
2,723,860	-				-1.0
2,723,860	-				+0.9
2,723,860	-				+1.6
2,723,860	-				-0.1
2,723,860	-				+1.9
2,723,888	+				+0.8
2,723,889	-				-1.1
2,723,889	-				+1.4
2,723,889	-				+1.4
2,723,997	-				+1.6
2,724,020	+				-1.2
2,724,178	+		Pf1N1B4_2405	0.15	+0.4
2,724,178	+		Pf1N1B4_2405	0.15	-0.2
2,724,178	+		Pf1N1B4_2405	0.15	+0.1
2,724,178	+		Pf1N1B4_2405	0.15	-0.4
2,724,179	-		Pf1N1B4_2405	0.15	+0.1
2,724,179	-		Pf1N1B4_2405	0.15	+0.6
2,724,179	-		Pf1N1B4_2405	0.15	-0.1
2,724,246	+		Pf1N1B4_2405	0.18	-0.5
2,724,246	+		Pf1N1B4_2405	0.18	-0.2