Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2026

Experiment: Spectinomycin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_2025 and Pf1N1B4_2026 are separated by 180 nucleotidesPf1N1B4_2026 and Pf1N1B4_2027 are separated by 334 nucleotidesPf1N1B4_2027 and Pf1N1B4_2028 are separated by 11 nucleotides Pf1N1B4_2025 - Aspartate ammonia-lyase (EC 4.3.1.1), at 2,311,815 to 2,313,239 _2025 Pf1N1B4_2026 - Transcriptional regulator, at 2,313,420 to 2,314,337 _2026 Pf1N1B4_2027 - Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21), at 2,314,672 to 2,315,163 _2027 Pf1N1B4_2028 - Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21), at 2,315,175 to 2,316,257 _2028 Position (kb) 2313 2314 2315Strain fitness (log2 ratio) -2 -1 0 1 2at 2312.846 kb on - strand, within Pf1N1B4_2025at 2313.166 kb on + strandat 2313.167 kb on - strandat 2313.170 kb on - strandat 2313.183 kb on + strandat 2313.292 kb on + strandat 2313.331 kb on + strandat 2313.331 kb on + strandat 2313.352 kb on - strandat 2313.393 kb on - strandat 2313.453 kb on - strandat 2313.867 kb on + strand, within Pf1N1B4_2026at 2313.867 kb on + strandat 2313.867 kb on + strand, within Pf1N1B4_2026at 2314.018 kb on - strand, within Pf1N1B4_2026at 2314.082 kb on + strand, within Pf1N1B4_2026at 2314.083 kb on - strand, within Pf1N1B4_2026at 2314.088 kb on + strand, within Pf1N1B4_2026at 2314.088 kb on + strand, within Pf1N1B4_2026at 2314.088 kb on + strand, within Pf1N1B4_2026at 2314.088 kb on + strand, within Pf1N1B4_2026at 2314.089 kb on - strand, within Pf1N1B4_2026at 2314.089 kb on - strand, within Pf1N1B4_2026at 2314.089 kb on - strandat 2314.092 kb on + strand, within Pf1N1B4_2026at 2314.092 kb on + strand, within Pf1N1B4_2026at 2314.331 kb on + strandat 2314.455 kb on + strandat 2314.455 kb on + strandat 2314.455 kb on + strandat 2314.455 kb on + strandat 2314.455 kb on + strandat 2314.455 kb on + strandat 2314.455 kb on + strandat 2314.455 kb on + strandat 2314.456 kb on - strandat 2314.456 kb on - strandat 2314.484 kb on + strandat 2314.484 kb on + strandat 2314.506 kb on - strandat 2314.534 kb on + strandat 2314.535 kb on - strandat 2314.535 kb on - strandat 2314.551 kb on + strandat 2314.551 kb on + strandat 2314.551 kb on + strandat 2314.551 kb on + strandat 2314.552 kb on - strandat 2314.552 kb on - strandat 2314.553 kb on + strandat 2314.553 kb on + strandat 2314.553 kb on + strandat 2314.553 kb on + strandat 2314.553 kb on + strandat 2314.587 kb on + strandat 2314.594 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Spectinomycin 0.05 mg/ml
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2,312,846 - Pf1N1B4_2025 0.72 -2.4
2,313,166 + -0.1
2,313,167 - -1.3
2,313,170 - -2.2
2,313,183 + +0.5
2,313,292 + -0.5
2,313,331 + -1.3
2,313,331 + -2.3
2,313,352 - -0.2
2,313,393 - +1.3
2,313,453 - -1.1
2,313,867 + Pf1N1B4_2026 0.49 -0.1
2,313,867 + +0.9
2,313,867 + Pf1N1B4_2026 0.49 -2.0
2,314,018 - Pf1N1B4_2026 0.65 -0.7
2,314,082 + Pf1N1B4_2026 0.72 -1.3
2,314,083 - Pf1N1B4_2026 0.72 +1.0
2,314,088 + Pf1N1B4_2026 0.73 -0.5
2,314,088 + Pf1N1B4_2026 0.73 -0.8
2,314,088 + Pf1N1B4_2026 0.73 -0.1
2,314,088 + Pf1N1B4_2026 0.73 -1.5
2,314,089 - Pf1N1B4_2026 0.73 -0.6
2,314,089 - Pf1N1B4_2026 0.73 +1.1
2,314,089 - +2.1
2,314,092 + Pf1N1B4_2026 0.73 -1.7
2,314,092 + Pf1N1B4_2026 0.73 -1.1
2,314,331 + +1.5
2,314,455 + +1.9
2,314,455 + -1.1
2,314,455 + -1.7
2,314,455 + +0.9
2,314,455 + -0.8
2,314,455 + +0.7
2,314,455 + +0.2
2,314,455 + -0.1
2,314,456 - -0.4
2,314,456 - -0.8
2,314,484 + +1.2
2,314,484 + +1.5
2,314,506 - -0.2
2,314,534 + -0.5
2,314,535 - -0.7
2,314,535 - +1.1
2,314,551 + +1.0
2,314,551 + -0.3
2,314,551 + -0.5
2,314,551 + +0.5
2,314,552 - -1.3
2,314,552 - -1.7
2,314,553 + -0.6
2,314,553 + +0.9
2,314,553 + +0.5
2,314,553 + +0.3
2,314,553 + +1.9
2,314,587 + +1.5
2,314,594 + -0.5

Or see this region's nucleotide sequence