Experiment: Spectinomycin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_2025 and Pf1N1B4_2026 are separated by 180 nucleotides Pf1N1B4_2026 and Pf1N1B4_2027 are separated by 334 nucleotides Pf1N1B4_2027 and Pf1N1B4_2028 are separated by 11 nucleotides
Pf1N1B4_2025 - Aspartate ammonia-lyase (EC 4.3.1.1), at 2,311,815 to 2,313,239
_2025
Pf1N1B4_2026 - Transcriptional regulator, at 2,313,420 to 2,314,337
_2026
Pf1N1B4_2027 - Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21), at 2,314,672 to 2,315,163
_2027
Pf1N1B4_2028 - Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21), at 2,315,175 to 2,316,257
_2028
Position (kb)
2313
2314
2315 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2312.846 kb on - strand, within Pf1N1B4_2025 at 2313.166 kb on + strand at 2313.167 kb on - strand at 2313.170 kb on - strand at 2313.183 kb on + strand at 2313.292 kb on + strand at 2313.331 kb on + strand at 2313.331 kb on + strand at 2313.352 kb on - strand at 2313.393 kb on - strand at 2313.453 kb on - strand at 2313.867 kb on + strand, within Pf1N1B4_2026 at 2313.867 kb on + strand at 2313.867 kb on + strand, within Pf1N1B4_2026 at 2314.018 kb on - strand, within Pf1N1B4_2026 at 2314.082 kb on + strand, within Pf1N1B4_2026 at 2314.083 kb on - strand, within Pf1N1B4_2026 at 2314.088 kb on + strand, within Pf1N1B4_2026 at 2314.088 kb on + strand, within Pf1N1B4_2026 at 2314.088 kb on + strand, within Pf1N1B4_2026 at 2314.088 kb on + strand, within Pf1N1B4_2026 at 2314.089 kb on - strand, within Pf1N1B4_2026 at 2314.089 kb on - strand, within Pf1N1B4_2026 at 2314.089 kb on - strand at 2314.092 kb on + strand, within Pf1N1B4_2026 at 2314.092 kb on + strand, within Pf1N1B4_2026 at 2314.331 kb on + strand at 2314.455 kb on + strand at 2314.455 kb on + strand at 2314.455 kb on + strand at 2314.455 kb on + strand at 2314.455 kb on + strand at 2314.455 kb on + strand at 2314.455 kb on + strand at 2314.455 kb on + strand at 2314.456 kb on - strand at 2314.456 kb on - strand at 2314.484 kb on + strand at 2314.484 kb on + strand at 2314.506 kb on - strand at 2314.534 kb on + strand at 2314.535 kb on - strand at 2314.535 kb on - strand at 2314.551 kb on + strand at 2314.551 kb on + strand at 2314.551 kb on + strand at 2314.551 kb on + strand at 2314.552 kb on - strand at 2314.552 kb on - strand at 2314.553 kb on + strand at 2314.553 kb on + strand at 2314.553 kb on + strand at 2314.553 kb on + strand at 2314.553 kb on + strand at 2314.587 kb on + strand at 2314.594 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.05 mg/ml remove 2,312,846 - Pf1N1B4_2025 0.72 -2.4 2,313,166 + -0.1 2,313,167 - -1.3 2,313,170 - -2.2 2,313,183 + +0.5 2,313,292 + -0.5 2,313,331 + -1.3 2,313,331 + -2.3 2,313,352 - -0.2 2,313,393 - +1.3 2,313,453 - -1.1 2,313,867 + Pf1N1B4_2026 0.49 -0.1 2,313,867 + +0.9 2,313,867 + Pf1N1B4_2026 0.49 -2.0 2,314,018 - Pf1N1B4_2026 0.65 -0.7 2,314,082 + Pf1N1B4_2026 0.72 -1.3 2,314,083 - Pf1N1B4_2026 0.72 +1.0 2,314,088 + Pf1N1B4_2026 0.73 -0.5 2,314,088 + Pf1N1B4_2026 0.73 -0.8 2,314,088 + Pf1N1B4_2026 0.73 -0.1 2,314,088 + Pf1N1B4_2026 0.73 -1.5 2,314,089 - Pf1N1B4_2026 0.73 -0.6 2,314,089 - Pf1N1B4_2026 0.73 +1.1 2,314,089 - +2.1 2,314,092 + Pf1N1B4_2026 0.73 -1.7 2,314,092 + Pf1N1B4_2026 0.73 -1.1 2,314,331 + +1.5 2,314,455 + +1.9 2,314,455 + -1.1 2,314,455 + -1.7 2,314,455 + +0.9 2,314,455 + -0.8 2,314,455 + +0.7 2,314,455 + +0.2 2,314,455 + -0.1 2,314,456 - -0.4 2,314,456 - -0.8 2,314,484 + +1.2 2,314,484 + +1.5 2,314,506 - -0.2 2,314,534 + -0.5 2,314,535 - -0.7 2,314,535 - +1.1 2,314,551 + +1.0 2,314,551 + -0.3 2,314,551 + -0.5 2,314,551 + +0.5 2,314,552 - -1.3 2,314,552 - -1.7 2,314,553 + -0.6 2,314,553 + +0.9 2,314,553 + +0.5 2,314,553 + +0.3 2,314,553 + +1.9 2,314,587 + +1.5 2,314,594 + -0.5
Or see this region's nucleotide sequence