Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS24040

Experiment: nitrate (N); low aeration

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHSERO_RS24035 and HSERO_RS24040 are separated by 240 nucleotides HSERO_RS24035: HSERO_RS24035 - hypothetical protein, at 5,512,154 to 5,512,471 _RS24035 HSERO_RS24040: HSERO_RS24040 - glutamine amidotransferase, at 5,512,712 to 5,513,479 _RS24040 Position (kb) 5512 5513 5514Strain fitness (log2 ratio) -1 0 1at 5511.747 kb on + strandat 5511.748 kb on + strandat 5511.761 kb on + strandat 5511.769 kb on - strandat 5511.834 kb on - strandat 5511.903 kb on + strandat 5511.950 kb on + strandat 5512.101 kb on + strandat 5512.452 kb on + strandat 5512.584 kb on - strandat 5512.731 kb on - strandat 5512.821 kb on - strand, within HSERO_RS24040at 5512.839 kb on + strand, within HSERO_RS24040at 5512.854 kb on + strand, within HSERO_RS24040at 5513.001 kb on + strandat 5513.501 kb on + strandat 5513.555 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N); low aeration
remove
5,511,747 + +0.4
5,511,748 + +0.1
5,511,761 + -0.4
5,511,769 - +0.3
5,511,834 - -0.4
5,511,903 + +1.2
5,511,950 + -0.0
5,512,101 + +0.6
5,512,452 + -0.6
5,512,584 - -0.2
5,512,731 - -0.0
5,512,821 - HSERO_RS24040 0.14 -0.9
5,512,839 + HSERO_RS24040 0.17 -0.7
5,512,854 + HSERO_RS24040 0.18 -0.5
5,513,001 + +1.2
5,513,501 + +0.2
5,513,555 - +0.3

Or see this region's nucleotide sequence