Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS21600

Experiment: nitrate (N); low aeration

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrate (N); low aeration
4,945,332	+		HSERO_RS21595	0.63	+0.5
4,945,513	+		HSERO_RS21595	0.70	-0.7
4,945,617	+		HSERO_RS21595	0.74	-0.3
4,945,703	-		HSERO_RS21595	0.77	+0.2
4,945,706	+		HSERO_RS21595	0.77	+0.8
4,945,859	+		HSERO_RS21595	0.83	+0.6
4,946,008	-		HSERO_RS21595	0.88	-0.3
4,946,128	-				-0.2
4,946,147	-				+0.0
4,946,245	-				-0.7
4,946,275	+				-0.2
4,946,397	+				+0.3
4,946,405	-				+0.3
4,946,415	-				+1.2
4,946,518	-		HSERO_RS21600	0.13	+0.6
4,946,556	+		HSERO_RS21600	0.15	-0.0
4,946,556	+		HSERO_RS21600	0.15	+0.3
4,946,556	+		HSERO_RS21600	0.15	-0.0
4,946,564	-		HSERO_RS21600	0.16	-0.5
4,946,564	-		HSERO_RS21600	0.16	-0.4
4,946,639	+		HSERO_RS21600	0.20	+0.6
4,946,647	-		HSERO_RS21600	0.21	+0.2
4,946,647	-		HSERO_RS21600	0.21	+1.5
4,946,647	-		HSERO_RS21600	0.21	+0.5
4,946,746	+		HSERO_RS21600	0.27	+0.2
4,946,791	-		HSERO_RS21600	0.30	+0.5
4,946,870	+		HSERO_RS21600	0.35	-0.6
4,946,903	+		HSERO_RS21600	0.37	-0.3
4,946,908	+		HSERO_RS21600	0.37	-0.2
4,946,939	-		HSERO_RS21600	0.39	+0.1
4,946,944	+		HSERO_RS21600	0.39	-0.4
4,946,992	+		HSERO_RS21600	0.42	-1.1
4,947,190	-		HSERO_RS21600	0.55	+1.1
4,947,192	-		HSERO_RS21600	0.55	-0.3
4,947,192	-				+1.6
4,947,201	+		HSERO_RS21600	0.55	-0.5
4,947,257	-		HSERO_RS21600	0.59	+0.2
4,947,307	+		HSERO_RS21600	0.62	+0.3
4,947,307	+		HSERO_RS21600	0.62	-1.1
4,947,312	+		HSERO_RS21600	0.62	-0.2
4,947,315	-		HSERO_RS21600	0.62	+0.7
4,947,315	-		HSERO_RS21600	0.62	+0.8
4,947,315	-		HSERO_RS21600	0.62	+1.5
4,947,328	+		HSERO_RS21600	0.63	+0.4
4,947,330	+		HSERO_RS21600	0.63	+0.2
4,947,377	-		HSERO_RS21600	0.66	+0.5
4,947,445	+		HSERO_RS21600	0.70	-0.1
4,947,446	+		HSERO_RS21600	0.70	-0.2
4,947,448	+		HSERO_RS21600	0.71	-0.1
4,947,473	+		HSERO_RS21600	0.72	-0.0
4,947,478	+		HSERO_RS21600	0.72	-0.4
4,947,478	+		HSERO_RS21600	0.72	+0.0
4,947,484	+		HSERO_RS21600	0.73	-0.4
4,947,484	+		HSERO_RS21600	0.73	-0.3
4,947,484	+		HSERO_RS21600	0.73	-0.6
4,947,484	+		HSERO_RS21600	0.73	+1.0
4,947,486	-		HSERO_RS21600	0.73	-0.1
4,947,486	-		HSERO_RS21600	0.73	-0.1
4,947,492	-		HSERO_RS21600	0.73	+0.0
4,947,492	-		HSERO_RS21600	0.73	+1.0
4,947,492	-		HSERO_RS21600	0.73	-0.0
4,947,492	-		HSERO_RS21600	0.73	+0.1
4,947,492	-		HSERO_RS21600	0.73	+0.1
4,947,492	-		HSERO_RS21600	0.73	+0.0
4,947,528	-		HSERO_RS21600	0.76	+0.3
4,947,528	-		HSERO_RS21600	0.76	-0.0
4,947,528	-		HSERO_RS21600	0.76	+2.0
4,947,528	-		HSERO_RS21600	0.76	-0.4
4,947,528	-		HSERO_RS21600	0.76	-0.1
4,947,534	+		HSERO_RS21600	0.76	+0.5
4,947,539	+		HSERO_RS21600	0.76	+0.5
4,947,542	-		HSERO_RS21600	0.76	-0.2
4,947,547	-		HSERO_RS21600	0.77	+0.6
4,947,547	-		HSERO_RS21600	0.77	-0.6
4,947,552	-		HSERO_RS21600	0.77	-1.5
4,947,554	+		HSERO_RS21600	0.77	-0.3
4,947,573	-				+0.8
4,947,648	+		HSERO_RS21600	0.83	-0.3
4,947,649	+		HSERO_RS21600	0.83	-0.4
4,947,655	+		HSERO_RS21600	0.83	+1.6
4,947,663	-		HSERO_RS21600	0.84	-0.1
4,947,663	-		HSERO_RS21600	0.84	+0.3
4,947,675	+		HSERO_RS21600	0.85	-0.1
4,947,675	+		HSERO_RS21600	0.85	-0.0
4,947,680	+		HSERO_RS21600	0.85	-0.8
4,947,680	+		HSERO_RS21600	0.85	+0.0
4,947,688	-		HSERO_RS21600	0.86	-0.2
4,947,696	+		HSERO_RS21600	0.86	+0.6
4,947,751	-		HSERO_RS21600	0.89	-0.1
4,947,768	+				+1.1
4,947,789	+				+0.1
4,947,802	+				+0.5
4,947,802	+				+0.3
4,947,814	+				-0.1
4,947,820	-				+0.1
4,947,833	+				+0.6
4,947,833	+				-0.5
4,947,833	+				+0.5
4,947,841	-				+1.0
4,947,852	+				+0.2
4,947,871	+				+0.4
4,947,871	+				+0.2
4,947,871	+				+0.3
4,947,877	+				+1.0
4,947,879	-				+0.3
4,947,879	-				+0.2
4,947,881	+				-1.3
4,947,881	+				+0.7
4,947,890	+				+0.0
4,947,890	+				+0.2
4,947,890	+				-0.0
4,947,890	+				+0.4
4,947,890	+				-0.3
4,947,890	+				+1.1
4,947,890	+				-1.2
4,947,890	+				-0.2
4,947,890	+				+0.9
4,947,897	+				+0.8
4,947,898	-				-0.8
4,947,898	-				+0.9
4,947,898	-				+0.4
4,947,898	-				-0.3
4,947,902	+				+0.5
4,947,902	+				-0.4
4,947,902	+				-0.4
4,947,902	+				-0.4
4,947,902	+				-0.6
4,947,905	-				-0.2
4,947,905	-				-0.6
4,947,910	-				+0.1
4,947,910	-				+0.2
4,947,910	-				+0.2
4,947,910	-				-0.9
4,947,910	-				-0.3
4,947,942	-				+0.9
4,947,951	-				+0.3
4,947,962	-				+1.0
4,947,962	-				-0.7
4,947,974	-				+0.4
4,947,974	-				+0.0
4,947,994	+				-0.0
4,947,994	+				-0.1
4,947,997	+				+0.2
4,947,997	+				+0.1
4,947,998	+				-0.0
4,948,002	-				-0.0
4,948,005	+				-0.4
4,948,005	+				+2.0
4,948,005	+				+0.8
4,948,005	+				+0.3
4,948,005	+				-0.7
4,948,005	+				-0.4
4,948,005	+				-0.4
4,948,005	+				-0.2
4,948,005	+				-0.2
4,948,005	+				-0.0
4,948,005	+				+0.2
4,948,005	+				+0.2
4,948,005	+				-0.2
4,948,005	+				-0.5
4,948,005	+				+1.1
4,948,005	+				+0.0
4,948,005	+				-0.3
4,948,005	+				-1.6
4,948,005	+				-0.1
4,948,005	+				+0.4
4,948,005	+				-0.1
4,948,005	+				+0.2
4,948,005	+				+1.2
4,948,005	+				-0.2
4,948,005	+				+0.3
4,948,005	+				+0.1
4,948,005	+				+0.1
4,948,005	+				+0.1
4,948,005	+				+0.6
4,948,005	+				+0.8
4,948,005	+				-0.3
4,948,005	+				+1.4
4,948,005	+				-0.5
4,948,005	+				-0.8
4,948,005	+				-0.5
4,948,005	+				+0.8
4,948,005	+				+0.8
4,948,005	+				+0.5
4,948,005	+				-0.1
4,948,005	+				+0.1
4,948,005	+				-0.0
4,948,005	+				-1.9
4,948,005	+				-0.4
4,948,005	+				-0.3
4,948,005	+				-0.6
4,948,005	+				-0.6
4,948,005	+				-0.5
4,948,005	+				+0.2
4,948,005	+				-0.2
4,948,005	+				-0.9
4,948,005	+				+0.7
4,948,005	+				-0.3
4,948,005	+				-0.1
4,948,005	-				+0.0
4,948,005	-				-0.1
4,948,005	-				+0.4
4,948,005	-				-0.2
4,948,005	-				-0.3
4,948,007	+				+0.5
4,948,013	-				-0.1
4,948,013	-				-0.9
4,948,013	-				+0.0
4,948,013	-				+0.0
4,948,013	-				+0.8
4,948,013	-				-0.0
4,948,013	-				+0.4
4,948,013	-				+0.5
4,948,013	-				+0.4
4,948,013	-				+0.4
4,948,013	-				+0.9
4,948,013	-				+0.8
4,948,013	-				+0.1
4,948,013	-				-0.8
4,948,013	-				-1.2
4,948,013	-				-0.1
4,948,013	-				+0.3
4,948,013	-				-0.0
4,948,013	-				-0.0
4,948,013	-				+0.4
4,948,013	-				-0.5
4,948,013	-				-0.0
4,948,013	-				+0.6
4,948,013	-				-0.3
4,948,013	-				-0.1
4,948,013	-				-0.8
4,948,013	-				-0.2
4,948,013	-				-0.0
4,948,013	-				-0.2
4,948,013	-				-0.1
4,948,013	-				-0.2
4,948,013	-				+0.2
4,948,013	-				-0.8
4,948,013	-				+0.0
4,948,013	-				-0.3
4,948,013	-				+0.4
4,948,013	-				+0.3
4,948,013	-				-0.1
4,948,013	-				-0.8
4,948,013	-				+0.4
4,948,013	-				-0.4
4,948,013	-				-0.0
4,948,013	-				+1.3
4,948,013	-				+0.1
4,948,013	-				+0.1
4,948,013	-				-0.2
4,948,013	-				-0.1
4,948,013	-				-0.3
4,948,013	-				+0.4
4,948,013	-				-0.3
4,948,013	-				+0.9
4,948,013	-				+0.6
4,948,013	-				+0.0
4,948,013	-				-0.4
4,948,013	-				+0.5
4,948,013	-				-0.1
4,948,013	-				-0.0
4,948,013	-				+0.7
4,948,013	-				+1.2
4,948,013	-				-0.7
4,948,013	-				-0.6
4,948,013	-				+0.4
4,948,013	-				-0.5
4,948,013	-				-0.2
4,948,013	-				+1.4
4,948,013	-				+0.6
4,948,025	-				-0.3
4,948,025	-				-0.1
4,948,093	-				+0.5
4,948,109	+				-0.6
4,948,116	+				+0.4
4,948,117	-				-0.2
4,948,125	-				-0.3
4,948,125	-				-0.7
4,948,142	-				-0.3
4,948,191	+		HSERO_RS21605	0.16	+0.1
4,948,211	+		HSERO_RS21605	0.18	-0.2
4,948,240	+		HSERO_RS21605	0.20	+0.2
4,948,240	+		HSERO_RS21605	0.20	-0.0
4,948,240	+		HSERO_RS21605	0.20	+0.2
4,948,240	+		HSERO_RS21605	0.20	+0.3
4,948,240	+		HSERO_RS21605	0.20	+0.1
4,948,248	-		HSERO_RS21605	0.21	+0.1
4,948,248	-		HSERO_RS21605	0.21	+0.9
4,948,248	-		HSERO_RS21605	0.21	+0.4
4,948,255	+		HSERO_RS21605	0.22	+0.1
4,948,269	-		HSERO_RS21605	0.23	-0.3
4,948,282	-		HSERO_RS21605	0.25	-0.4
4,948,329	-		HSERO_RS21605	0.29	+1.0
4,948,352	-		HSERO_RS21605	0.32	+0.3
4,948,352	-		HSERO_RS21605	0.32	+0.4
4,948,354	-		HSERO_RS21605	0.32	+2.1
4,948,364	-		HSERO_RS21605	0.33	+0.8
4,948,365	+		HSERO_RS21605	0.33	-1.6
4,948,366	-		HSERO_RS21605	0.33	+0.2
4,948,396	+		HSERO_RS21605	0.36	-0.9
4,948,396	+		HSERO_RS21605	0.36	+0.3
4,948,404	-		HSERO_RS21605	0.37	+0.6
4,948,407	+		HSERO_RS21605	0.37	+0.2
4,948,444	-		HSERO_RS21605	0.41	+0.3
4,948,446	-		HSERO_RS21605	0.41	+0.8
4,948,446	-				+0.8
4,948,466	+		HSERO_RS21605	0.43	+0.2
4,948,471	+		HSERO_RS21605	0.44	-0.3
4,948,471	+		HSERO_RS21605	0.44	-0.5
4,948,471	+		HSERO_RS21605	0.44	-0.2
4,948,471	+		HSERO_RS21605	0.44	+0.2
4,948,478	+		HSERO_RS21605	0.44	+0.1
4,948,478	+		HSERO_RS21605	0.44	-0.2
4,948,478	+		HSERO_RS21605	0.44	+0.1
4,948,479	-		HSERO_RS21605	0.45	-0.1
4,948,479	-		HSERO_RS21605	0.45	-0.2
4,948,496	-		HSERO_RS21605	0.46	-0.0
4,948,720	+		HSERO_RS21605	0.69	-0.3