Experiment: nitrate (N); low aeration
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS05100 and HSERO_RS05105 are separated by 27 nucleotides HSERO_RS05105 and HSERO_RS05110 are separated by 2 nucleotides HSERO_RS05110 and HSERO_RS05115 are separated by 200 nucleotides
HSERO_RS05100: HSERO_RS05100 - sugar ABC transporter permease, at 1,127,262 to 1,128,275
_RS05100
HSERO_RS05105: HSERO_RS05105 - ribokinase, at 1,128,303 to 1,129,262
_RS05105
HSERO_RS05110: HSERO_RS05110 - RbsD or FucU transport protein, at 1,129,265 to 1,129,717
_RS05110
HSERO_RS05115: HSERO_RS05115 - aldehyde dehydrogenase, at 1,129,918 to 1,132,299
_RS05115
Position (kb) 1129
1130 Strain fitness (log2 ratio) -1
0
1 at 1128.379 kb on + strand at 1128.477 kb on + strand, within HSERO_RS05105 at 1128.726 kb on - strand, within HSERO_RS05105 at 1128.764 kb on - strand, within HSERO_RS05105 at 1128.843 kb on + strand, within HSERO_RS05105 at 1129.263 kb on - strand at 1129.314 kb on + strand, within HSERO_RS05110 at 1129.671 kb on + strand, within HSERO_RS05110 at 1129.970 kb on - strand at 1130.025 kb on + strand at 1130.385 kb on - strand, within HSERO_RS05115 at 1130.557 kb on - strand, within HSERO_RS05115 at 1130.701 kb on - strand, within HSERO_RS05115
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N); low aeration remove 1,128,379 + -0.1 1,128,477 + HSERO_RS05105 0.18 +0.0 1,128,726 - HSERO_RS05105 0.44 +0.1 1,128,764 - HSERO_RS05105 0.48 -0.0 1,128,843 + HSERO_RS05105 0.56 -0.8 1,129,263 - +1.5 1,129,314 + HSERO_RS05110 0.11 +1.5 1,129,671 + HSERO_RS05110 0.90 +0.1 1,129,970 - -0.2 1,130,025 + +0.4 1,130,385 - HSERO_RS05115 0.20 -0.6 1,130,557 - HSERO_RS05115 0.27 +0.9 1,130,701 - HSERO_RS05115 0.33 -0.5
Or see this region's nucleotide sequence