Experiment: Gly-DL-Asp (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS15940 and CA265_RS15945 are separated by 8 nucleotides CA265_RS15945 and CA265_RS15950 are separated by 90 nucleotides CA265_RS15950 and CA265_RS15955 are separated by 148 nucleotides
CA265_RS15940: CA265_RS15940 - DNA-binding response regulator, at 4,002,319 to 4,003,023
_RS15940
CA265_RS15945: CA265_RS15945 - two-component sensor histidine kinase, at 4,003,032 to 4,003,898
_RS15945
CA265_RS15950: CA265_RS15950 - glutamate-1-semialdehyde-2,1-aminomutase, at 4,003,989 to 4,005,359
_RS15950
CA265_RS15955: CA265_RS15955 - delta-aminolevulinic acid dehydratase, at 4,005,508 to 4,006,476
_RS15955
Position (kb)
4003
4004
4005
4006 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 4003.038 kb on - strand at 4003.056 kb on - strand at 4003.195 kb on - strand, within CA265_RS15945 at 4003.246 kb on - strand, within CA265_RS15945 at 4003.273 kb on - strand, within CA265_RS15945 at 4003.285 kb on - strand, within CA265_RS15945 at 4003.327 kb on - strand, within CA265_RS15945 at 4003.443 kb on - strand, within CA265_RS15945 at 4003.491 kb on - strand, within CA265_RS15945 at 4003.557 kb on - strand, within CA265_RS15945 at 4003.859 kb on - strand at 4003.913 kb on + strand at 4003.913 kb on + strand at 4003.990 kb on + strand at 4005.416 kb on - strand at 4005.481 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (N) remove 4,003,038 - +0.4 4,003,056 - -4.0 4,003,195 - CA265_RS15945 0.19 -1.8 4,003,246 - CA265_RS15945 0.25 -1.1 4,003,273 - CA265_RS15945 0.28 -1.4 4,003,285 - CA265_RS15945 0.29 -1.9 4,003,327 - CA265_RS15945 0.34 +0.1 4,003,443 - CA265_RS15945 0.47 -1.4 4,003,491 - CA265_RS15945 0.53 -1.1 4,003,557 - CA265_RS15945 0.61 -0.9 4,003,859 - -2.2 4,003,913 + +0.1 4,003,913 + +0.4 4,003,990 + -0.3 4,005,416 - -0.6 4,005,481 - +0.9
Or see this region's nucleotide sequence