Experiment: Gly-DL-Asp (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS04080 and CA265_RS04085 are separated by 137 nucleotides CA265_RS04085 and CA265_RS04090 are separated by 215 nucleotides
CA265_RS04080: CA265_RS04080 - hypothetical protein, at 980,016 to 982,451
_RS04080
CA265_RS04085: CA265_RS04085 - phosphohydrolase, at 982,589 to 983,809
_RS04085
CA265_RS04090: CA265_RS04090 - transcriptional regulator, at 984,025 to 984,471
_RS04090
Position (kb) 982
983
984 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 981.617 kb on + strand, within CA265_RS04080 at 981.645 kb on + strand, within CA265_RS04080 at 981.646 kb on - strand, within CA265_RS04080 at 981.751 kb on - strand, within CA265_RS04080 at 981.771 kb on - strand, within CA265_RS04080 at 981.852 kb on + strand, within CA265_RS04080 at 981.883 kb on + strand, within CA265_RS04080 at 981.883 kb on + strand, within CA265_RS04080 at 981.888 kb on - strand, within CA265_RS04080 at 981.898 kb on + strand, within CA265_RS04080 at 981.984 kb on - strand, within CA265_RS04080 at 981.984 kb on - strand, within CA265_RS04080 at 981.985 kb on + strand, within CA265_RS04080 at 981.985 kb on + strand, within CA265_RS04080 at 981.986 kb on - strand, within CA265_RS04080 at 981.986 kb on - strand, within CA265_RS04080 at 982.051 kb on - strand, within CA265_RS04080 at 982.093 kb on + strand, within CA265_RS04080 at 982.103 kb on - strand, within CA265_RS04080 at 982.103 kb on - strand, within CA265_RS04080 at 982.103 kb on - strand, within CA265_RS04080 at 982.103 kb on - strand, within CA265_RS04080 at 982.135 kb on - strand, within CA265_RS04080 at 982.165 kb on + strand, within CA265_RS04080 at 982.265 kb on - strand at 982.333 kb on - strand at 982.368 kb on + strand at 982.423 kb on - strand at 982.442 kb on + strand at 982.482 kb on + strand at 982.505 kb on + strand at 982.505 kb on + strand at 982.509 kb on + strand at 982.578 kb on + strand at 982.578 kb on + strand at 982.610 kb on + strand at 982.611 kb on - strand at 982.683 kb on + strand at 982.703 kb on - strand at 982.734 kb on - strand, within CA265_RS04085 at 983.035 kb on - strand, within CA265_RS04085 at 983.090 kb on - strand, within CA265_RS04085 at 983.091 kb on + strand, within CA265_RS04085 at 983.091 kb on + strand, within CA265_RS04085 at 983.101 kb on - strand, within CA265_RS04085 at 983.167 kb on - strand, within CA265_RS04085 at 983.167 kb on - strand, within CA265_RS04085 at 983.295 kb on - strand, within CA265_RS04085 at 983.353 kb on - strand, within CA265_RS04085 at 983.359 kb on + strand, within CA265_RS04085 at 983.360 kb on - strand, within CA265_RS04085 at 983.365 kb on + strand, within CA265_RS04085 at 983.383 kb on - strand, within CA265_RS04085 at 983.396 kb on - strand, within CA265_RS04085 at 983.411 kb on + strand, within CA265_RS04085 at 983.457 kb on + strand, within CA265_RS04085 at 983.516 kb on + strand, within CA265_RS04085 at 983.517 kb on - strand, within CA265_RS04085 at 983.558 kb on + strand, within CA265_RS04085 at 983.558 kb on + strand, within CA265_RS04085 at 983.559 kb on - strand, within CA265_RS04085 at 983.650 kb on - strand, within CA265_RS04085 at 983.678 kb on - strand, within CA265_RS04085 at 983.678 kb on - strand, within CA265_RS04085 at 983.699 kb on - strand at 983.708 kb on - strand at 983.836 kb on - strand at 983.866 kb on - strand at 983.866 kb on - strand at 983.870 kb on + strand at 983.919 kb on - strand at 983.936 kb on + strand at 983.947 kb on - strand at 983.947 kb on - strand at 983.985 kb on + strand at 983.993 kb on - strand at 984.088 kb on - strand, within CA265_RS04090 at 984.388 kb on - strand, within CA265_RS04090 at 984.460 kb on - strand at 984.524 kb on + strand at 984.529 kb on + strand at 984.561 kb on - strand at 984.624 kb on + strand at 984.678 kb on - strand at 984.709 kb on - strand at 984.762 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (N) remove 981,617 + CA265_RS04080 0.66 -0.7 981,645 + CA265_RS04080 0.67 -0.3 981,646 - CA265_RS04080 0.67 +0.5 981,751 - CA265_RS04080 0.71 -0.2 981,771 - CA265_RS04080 0.72 -0.3 981,852 + CA265_RS04080 0.75 -0.3 981,883 + CA265_RS04080 0.77 +0.4 981,883 + CA265_RS04080 0.77 +1.7 981,888 - CA265_RS04080 0.77 -0.3 981,898 + CA265_RS04080 0.77 -0.2 981,984 - CA265_RS04080 0.81 -0.1 981,984 - CA265_RS04080 0.81 +0.2 981,985 + CA265_RS04080 0.81 -0.4 981,985 + CA265_RS04080 0.81 -0.3 981,986 - CA265_RS04080 0.81 -0.2 981,986 - CA265_RS04080 0.81 -0.2 982,051 - CA265_RS04080 0.84 +0.5 982,093 + CA265_RS04080 0.85 +0.4 982,103 - CA265_RS04080 0.86 +0.5 982,103 - CA265_RS04080 0.86 +0.5 982,103 - CA265_RS04080 0.86 +0.5 982,103 - CA265_RS04080 0.86 -0.2 982,135 - CA265_RS04080 0.87 +0.1 982,165 + CA265_RS04080 0.88 -0.6 982,265 - -0.3 982,333 - +0.5 982,368 + +0.7 982,423 - +0.5 982,442 + +0.1 982,482 + -0.9 982,505 + +0.1 982,505 + -1.0 982,509 + +0.6 982,578 + +0.3 982,578 + +0.6 982,610 + -0.5 982,611 - -0.8 982,683 + -0.3 982,703 - -2.1 982,734 - CA265_RS04085 0.12 +0.0 983,035 - CA265_RS04085 0.37 +0.1 983,090 - CA265_RS04085 0.41 -0.3 983,091 + CA265_RS04085 0.41 +1.2 983,091 + CA265_RS04085 0.41 -1.4 983,101 - CA265_RS04085 0.42 -0.1 983,167 - CA265_RS04085 0.47 -0.2 983,167 - CA265_RS04085 0.47 -0.9 983,295 - CA265_RS04085 0.58 -0.1 983,353 - CA265_RS04085 0.63 -0.4 983,359 + CA265_RS04085 0.63 -2.9 983,360 - CA265_RS04085 0.63 +1.6 983,365 + CA265_RS04085 0.64 -1.8 983,383 - CA265_RS04085 0.65 -0.2 983,396 - CA265_RS04085 0.66 -1.0 983,411 + CA265_RS04085 0.67 -1.4 983,457 + CA265_RS04085 0.71 -2.1 983,516 + CA265_RS04085 0.76 -1.2 983,517 - CA265_RS04085 0.76 +0.3 983,558 + CA265_RS04085 0.79 -2.2 983,558 + CA265_RS04085 0.79 -1.2 983,559 - CA265_RS04085 0.79 -1.9 983,650 - CA265_RS04085 0.87 +0.2 983,678 - CA265_RS04085 0.89 +0.9 983,678 - CA265_RS04085 0.89 +1.0 983,699 - -0.3 983,708 - -0.8 983,836 - -0.3 983,866 - -1.3 983,866 - -0.9 983,870 + -2.7 983,919 - -0.3 983,936 + -3.5 983,947 - +0.8 983,947 - +0.9 983,985 + -2.6 983,993 - +2.0 984,088 - CA265_RS04090 0.14 -1.6 984,388 - CA265_RS04090 0.81 -1.2 984,460 - -1.0 984,524 + -0.2 984,529 + +0.6 984,561 - +1.4 984,624 + +1.6 984,678 - +1.5 984,709 - +1.3 984,762 + +2.0
Or see this region's nucleotide sequence