Experiment: rhizosphere sample 8; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS21720 and ABZR87_RS21725 are separated by 196 nucleotides ABZR87_RS21725 and ABZR87_RS21730 overlap by 1 nucleotides ABZR87_RS21730 and ABZR87_RS21735 are separated by 9 nucleotides ABZR87_RS21735 and ABZR87_RS21740 are separated by 252 nucleotides
ABZR87_RS21720: ABZR87_RS21720 - hypothetical protein, at 1,258,560 to 1,258,913
_RS21720
ABZR87_RS21725: ABZR87_RS21725 - heavy metal response regulator transcription factor, at 1,259,110 to 1,259,784
_RS21725
ABZR87_RS21730: ABZR87_RS21730 - heavy metal sensor histidine kinase, at 1,259,784 to 1,261,226
_RS21730
ABZR87_RS21735: ABZR87_RS21735 - DUF2917 domain-containing protein, at 1,261,236 to 1,261,598
_RS21735
ABZR87_RS21740: ABZR87_RS21740 - TauD/TfdA family dioxygenase, at 1,261,851 to 1,262,807
_RS21740
Position (kb)
1259
1260
1261
1262 Strain fitness (log2 ratio)
-2
-1
0
1 at 1259.064 kb on + strand at 1259.064 kb on + strand at 1259.065 kb on - strand at 1259.065 kb on - strand at 1259.153 kb on - strand at 1259.242 kb on + strand, within ABZR87_RS21725 at 1259.243 kb on - strand, within ABZR87_RS21725 at 1259.243 kb on - strand, within ABZR87_RS21725 at 1259.243 kb on - strand, within ABZR87_RS21725 at 1259.243 kb on - strand, within ABZR87_RS21725 at 1259.243 kb on - strand, within ABZR87_RS21725 at 1259.398 kb on + strand, within ABZR87_RS21725 at 1259.398 kb on + strand, within ABZR87_RS21725 at 1259.398 kb on + strand, within ABZR87_RS21725 at 1259.399 kb on - strand, within ABZR87_RS21725 at 1259.569 kb on + strand, within ABZR87_RS21725 at 1259.570 kb on - strand, within ABZR87_RS21725 at 1259.639 kb on + strand, within ABZR87_RS21725 at 1259.892 kb on + strand at 1259.892 kb on + strand at 1259.892 kb on + strand at 1259.893 kb on - strand at 1259.893 kb on - strand at 1259.893 kb on - strand at 1259.898 kb on + strand at 1259.898 kb on + strand at 1259.899 kb on - strand at 1259.987 kb on - strand, within ABZR87_RS21730 at 1260.024 kb on + strand, within ABZR87_RS21730 at 1260.024 kb on + strand, within ABZR87_RS21730 at 1260.027 kb on - strand, within ABZR87_RS21730 at 1260.172 kb on + strand, within ABZR87_RS21730 at 1260.306 kb on + strand, within ABZR87_RS21730 at 1260.306 kb on + strand, within ABZR87_RS21730 at 1260.307 kb on - strand, within ABZR87_RS21730 at 1260.648 kb on + strand, within ABZR87_RS21730 at 1260.649 kb on - strand, within ABZR87_RS21730 at 1260.681 kb on + strand, within ABZR87_RS21730 at 1260.681 kb on + strand, within ABZR87_RS21730 at 1260.682 kb on - strand, within ABZR87_RS21730 at 1260.801 kb on + strand, within ABZR87_RS21730 at 1261.266 kb on - strand at 1261.331 kb on + strand, within ABZR87_RS21735 at 1261.778 kb on - strand at 1261.816 kb on + strand at 1261.816 kb on + strand at 1261.816 kb on + strand at 1261.817 kb on - strand at 1261.903 kb on + strand at 1261.922 kb on + strand at 1261.923 kb on - strand at 1261.989 kb on + strand, within ABZR87_RS21740 at 1262.007 kb on + strand, within ABZR87_RS21740 at 1262.007 kb on + strand, within ABZR87_RS21740 at 1262.007 kb on + strand, within ABZR87_RS21740 at 1262.008 kb on - strand, within ABZR87_RS21740 at 1262.008 kb on - strand, within ABZR87_RS21740 at 1262.008 kb on - strand, within ABZR87_RS21740 at 1262.008 kb on - strand, within ABZR87_RS21740
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 8; outgrowth in LB remove 1,259,064 + -0.1 1,259,064 + -0.3 1,259,065 - -0.0 1,259,065 - -0.0 1,259,153 - -1.7 1,259,242 + ABZR87_RS21725 0.20 -1.2 1,259,243 - ABZR87_RS21725 0.20 +1.2 1,259,243 - ABZR87_RS21725 0.20 -1.6 1,259,243 - ABZR87_RS21725 0.20 -1.0 1,259,243 - ABZR87_RS21725 0.20 +0.3 1,259,243 - ABZR87_RS21725 0.20 +0.0 1,259,398 + ABZR87_RS21725 0.43 +0.0 1,259,398 + ABZR87_RS21725 0.43 -0.2 1,259,398 + ABZR87_RS21725 0.43 -0.5 1,259,399 - ABZR87_RS21725 0.43 -1.1 1,259,569 + ABZR87_RS21725 0.68 -0.8 1,259,570 - ABZR87_RS21725 0.68 +0.7 1,259,639 + ABZR87_RS21725 0.78 +0.5 1,259,892 + -0.8 1,259,892 + -0.8 1,259,892 + -0.7 1,259,893 - +0.2 1,259,893 - +0.6 1,259,893 - +1.2 1,259,898 + +1.1 1,259,898 + -0.1 1,259,899 - -0.8 1,259,987 - ABZR87_RS21730 0.14 -0.4 1,260,024 + ABZR87_RS21730 0.17 -0.8 1,260,024 + ABZR87_RS21730 0.17 -0.9 1,260,027 - ABZR87_RS21730 0.17 -0.7 1,260,172 + ABZR87_RS21730 0.27 +0.7 1,260,306 + ABZR87_RS21730 0.36 +0.8 1,260,306 + ABZR87_RS21730 0.36 +1.6 1,260,307 - ABZR87_RS21730 0.36 +0.7 1,260,648 + ABZR87_RS21730 0.60 -1.1 1,260,649 - ABZR87_RS21730 0.60 -0.9 1,260,681 + ABZR87_RS21730 0.62 +1.5 1,260,681 + ABZR87_RS21730 0.62 -0.4 1,260,682 - ABZR87_RS21730 0.62 -1.3 1,260,801 + ABZR87_RS21730 0.70 -0.0 1,261,266 - +0.1 1,261,331 + ABZR87_RS21735 0.26 -0.5 1,261,778 - -0.7 1,261,816 + -0.6 1,261,816 + +0.3 1,261,816 + +0.1 1,261,817 - -0.6 1,261,903 + -1.1 1,261,922 + -0.2 1,261,923 - +0.4 1,261,989 + ABZR87_RS21740 0.14 +0.3 1,262,007 + ABZR87_RS21740 0.16 -0.3 1,262,007 + ABZR87_RS21740 0.16 -2.0 1,262,007 + ABZR87_RS21740 0.16 -1.5 1,262,008 - ABZR87_RS21740 0.16 +0.6 1,262,008 - ABZR87_RS21740 0.16 -0.0 1,262,008 - ABZR87_RS21740 0.16 +0.6 1,262,008 - ABZR87_RS21740 0.16 +0.2
Or see this region's nucleotide sequence