Experiment: rhizosphere sample 8; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19765 and ABZR87_RS19770 are separated by 122 nucleotides ABZR87_RS19770 and ABZR87_RS19775 are separated by 156 nucleotides ABZR87_RS19775 and ABZR87_RS19780 are separated by 140 nucleotides ABZR87_RS19780 and ABZR87_RS19785 are separated by 11 nucleotides
ABZR87_RS19765: ABZR87_RS19765 - hypothetical protein, at 808,266 to 808,796
_RS19765
ABZR87_RS19770: ABZR87_RS19770 - H-NS family nucleoid-associated regulatory protein, at 808,919 to 809,188
_RS19770
ABZR87_RS19775: ABZR87_RS19775 - DMT family transporter, at 809,345 to 810,247
_RS19775
ABZR87_RS19780: ABZR87_RS19780 - Lrp/AsnC family transcriptional regulator, at 810,388 to 810,834
_RS19780
ABZR87_RS19785: ABZR87_RS19785 - cystathionine beta-lyase, at 810,846 to 812,024
_RS19785
Position (kb) 809
810
811 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 808.776 kb on + strand at 808.776 kb on + strand at 808.776 kb on + strand at 808.777 kb on - strand at 808.777 kb on - strand at 808.777 kb on - strand at 808.777 kb on - strand at 808.777 kb on - strand at 808.875 kb on + strand at 808.876 kb on - strand at 808.901 kb on - strand at 808.901 kb on - strand at 809.025 kb on + strand, within ABZR87_RS19770 at 809.025 kb on + strand, within ABZR87_RS19770 at 809.025 kb on + strand, within ABZR87_RS19770 at 809.026 kb on - strand, within ABZR87_RS19770 at 809.026 kb on - strand, within ABZR87_RS19770 at 809.026 kb on - strand, within ABZR87_RS19770 at 809.115 kb on + strand, within ABZR87_RS19770 at 809.115 kb on + strand, within ABZR87_RS19770 at 809.115 kb on + strand, within ABZR87_RS19770 at 809.115 kb on + strand, within ABZR87_RS19770 at 809.115 kb on + strand, within ABZR87_RS19770 at 809.115 kb on + strand, within ABZR87_RS19770 at 809.115 kb on + strand, within ABZR87_RS19770 at 809.115 kb on + strand, within ABZR87_RS19770 at 809.115 kb on + strand, within ABZR87_RS19770 at 809.116 kb on - strand, within ABZR87_RS19770 at 809.193 kb on + strand at 809.193 kb on + strand at 809.193 kb on + strand at 809.193 kb on + strand at 809.193 kb on + strand at 809.193 kb on + strand at 809.193 kb on + strand at 809.193 kb on + strand at 809.193 kb on + strand at 809.194 kb on - strand at 809.194 kb on - strand at 809.194 kb on - strand at 809.194 kb on - strand at 809.194 kb on - strand at 809.194 kb on - strand at 809.194 kb on - strand at 809.194 kb on - strand at 809.194 kb on - strand at 809.197 kb on + strand at 809.197 kb on + strand at 809.197 kb on + strand at 809.197 kb on + strand at 809.198 kb on - strand at 809.198 kb on - strand at 809.198 kb on - strand at 809.198 kb on - strand at 809.198 kb on - strand at 809.198 kb on - strand at 809.285 kb on + strand at 809.285 kb on + strand at 809.285 kb on + strand at 809.286 kb on - strand at 809.286 kb on - strand at 809.329 kb on + strand at 809.329 kb on + strand at 809.330 kb on - strand at 809.338 kb on + strand at 809.338 kb on + strand at 809.339 kb on - strand at 809.512 kb on - strand, within ABZR87_RS19775 at 809.566 kb on - strand, within ABZR87_RS19775 at 809.566 kb on - strand, within ABZR87_RS19775 at 809.566 kb on - strand, within ABZR87_RS19775 at 809.577 kb on + strand, within ABZR87_RS19775 at 809.577 kb on + strand, within ABZR87_RS19775 at 809.577 kb on + strand, within ABZR87_RS19775 at 809.577 kb on + strand, within ABZR87_RS19775 at 809.578 kb on - strand, within ABZR87_RS19775 at 809.578 kb on - strand, within ABZR87_RS19775 at 809.578 kb on - strand, within ABZR87_RS19775 at 809.578 kb on - strand, within ABZR87_RS19775 at 809.578 kb on - strand, within ABZR87_RS19775 at 809.578 kb on - strand, within ABZR87_RS19775 at 809.578 kb on - strand, within ABZR87_RS19775 at 809.578 kb on - strand, within ABZR87_RS19775 at 809.578 kb on - strand, within ABZR87_RS19775 at 809.578 kb on - strand, within ABZR87_RS19775 at 809.670 kb on - strand, within ABZR87_RS19775 at 809.803 kb on - strand, within ABZR87_RS19775 at 809.803 kb on - strand, within ABZR87_RS19775 at 809.953 kb on - strand, within ABZR87_RS19775 at 809.953 kb on - strand, within ABZR87_RS19775 at 809.988 kb on + strand, within ABZR87_RS19775 at 810.098 kb on + strand, within ABZR87_RS19775 at 810.098 kb on + strand, within ABZR87_RS19775 at 810.098 kb on + strand, within ABZR87_RS19775 at 810.099 kb on - strand, within ABZR87_RS19775 at 810.199 kb on + strand at 810.199 kb on + strand at 810.199 kb on + strand at 810.199 kb on + strand at 810.200 kb on - strand at 810.200 kb on - strand at 810.200 kb on - strand at 810.200 kb on - strand at 810.200 kb on - strand at 810.200 kb on - strand at 810.200 kb on - strand at 810.238 kb on + strand at 810.239 kb on - strand at 810.332 kb on + strand at 810.333 kb on - strand at 810.333 kb on - strand at 810.538 kb on + strand, within ABZR87_RS19780 at 810.538 kb on + strand, within ABZR87_RS19780 at 810.538 kb on + strand, within ABZR87_RS19780 at 810.539 kb on - strand, within ABZR87_RS19780 at 810.539 kb on - strand, within ABZR87_RS19780 at 810.539 kb on - strand, within ABZR87_RS19780 at 810.539 kb on - strand, within ABZR87_RS19780 at 810.571 kb on + strand, within ABZR87_RS19780 at 810.572 kb on - strand, within ABZR87_RS19780 at 810.622 kb on - strand, within ABZR87_RS19780 at 810.622 kb on - strand, within ABZR87_RS19780 at 810.622 kb on - strand, within ABZR87_RS19780 at 810.706 kb on + strand, within ABZR87_RS19780 at 810.706 kb on + strand, within ABZR87_RS19780 at 810.706 kb on + strand, within ABZR87_RS19780 at 810.707 kb on - strand, within ABZR87_RS19780 at 810.707 kb on - strand, within ABZR87_RS19780 at 810.707 kb on - strand, within ABZR87_RS19780 at 810.707 kb on - strand, within ABZR87_RS19780 at 810.707 kb on - strand, within ABZR87_RS19780 at 810.707 kb on - strand, within ABZR87_RS19780 at 810.754 kb on + strand, within ABZR87_RS19780 at 810.754 kb on + strand, within ABZR87_RS19780 at 810.771 kb on + strand, within ABZR87_RS19780 at 810.847 kb on + strand at 810.962 kb on - strand at 810.962 kb on - strand at 810.962 kb on - strand at 810.992 kb on - strand, within ABZR87_RS19785 at 811.098 kb on + strand, within ABZR87_RS19785 at 811.098 kb on + strand, within ABZR87_RS19785 at 811.098 kb on + strand, within ABZR87_RS19785 at 811.098 kb on + strand, within ABZR87_RS19785 at 811.098 kb on + strand, within ABZR87_RS19785 at 811.099 kb on - strand, within ABZR87_RS19785 at 811.099 kb on - strand, within ABZR87_RS19785 at 811.099 kb on - strand, within ABZR87_RS19785
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 8; outgrowth in LB remove 808,776 + -2.2 808,776 + +0.1 808,776 + +0.1 808,777 - +0.0 808,777 - -2.1 808,777 - -0.0 808,777 - -0.0 808,777 - +1.3 808,875 + +0.5 808,876 - +0.0 808,901 - +0.2 808,901 - +0.2 809,025 + ABZR87_RS19770 0.39 -0.6 809,025 + ABZR87_RS19770 0.39 -0.6 809,025 + ABZR87_RS19770 0.39 +0.1 809,026 - ABZR87_RS19770 0.40 -1.0 809,026 - ABZR87_RS19770 0.40 -0.2 809,026 - ABZR87_RS19770 0.40 -0.9 809,115 + ABZR87_RS19770 0.73 +0.5 809,115 + ABZR87_RS19770 0.73 +0.5 809,115 + ABZR87_RS19770 0.73 -0.5 809,115 + ABZR87_RS19770 0.73 -0.5 809,115 + ABZR87_RS19770 0.73 -0.3 809,115 + ABZR87_RS19770 0.73 -1.8 809,115 + ABZR87_RS19770 0.73 -0.9 809,115 + ABZR87_RS19770 0.73 -0.9 809,115 + ABZR87_RS19770 0.73 -0.2 809,116 - ABZR87_RS19770 0.73 -0.2 809,193 + +0.5 809,193 + -0.0 809,193 + -0.4 809,193 + -0.5 809,193 + +0.3 809,193 + -0.6 809,193 + +0.6 809,193 + +0.2 809,193 + -0.0 809,194 - -0.8 809,194 - -1.0 809,194 - -1.2 809,194 - -0.1 809,194 - -0.3 809,194 - -0.3 809,194 - -0.0 809,194 - +1.0 809,194 - -1.6 809,197 + -0.3 809,197 + -0.6 809,197 + +1.8 809,197 + +0.6 809,198 - -0.0 809,198 - +0.6 809,198 - +0.2 809,198 - -0.9 809,198 - -1.0 809,198 - +0.2 809,285 + -0.9 809,285 + +0.5 809,285 + +0.4 809,286 - -1.0 809,286 - -1.6 809,329 + -2.7 809,329 + -1.7 809,330 - -0.5 809,338 + -0.7 809,338 + -0.2 809,339 - -2.1 809,512 - ABZR87_RS19775 0.18 -1.4 809,566 - ABZR87_RS19775 0.24 +0.2 809,566 - ABZR87_RS19775 0.24 +0.4 809,566 - ABZR87_RS19775 0.24 +0.5 809,577 + ABZR87_RS19775 0.26 -0.6 809,577 + ABZR87_RS19775 0.26 +0.1 809,577 + ABZR87_RS19775 0.26 +1.3 809,577 + ABZR87_RS19775 0.26 +0.3 809,578 - ABZR87_RS19775 0.26 -0.7 809,578 - ABZR87_RS19775 0.26 -1.2 809,578 - ABZR87_RS19775 0.26 -0.2 809,578 - ABZR87_RS19775 0.26 -0.3 809,578 - ABZR87_RS19775 0.26 -0.7 809,578 - ABZR87_RS19775 0.26 +0.5 809,578 - ABZR87_RS19775 0.26 +0.5 809,578 - ABZR87_RS19775 0.26 +0.0 809,578 - ABZR87_RS19775 0.26 +0.6 809,578 - ABZR87_RS19775 0.26 +0.4 809,670 - ABZR87_RS19775 0.36 +0.0 809,803 - ABZR87_RS19775 0.51 +0.2 809,803 - ABZR87_RS19775 0.51 +0.8 809,953 - ABZR87_RS19775 0.67 +0.4 809,953 - ABZR87_RS19775 0.67 -0.4 809,988 + ABZR87_RS19775 0.71 -0.5 810,098 + ABZR87_RS19775 0.83 -1.2 810,098 + ABZR87_RS19775 0.83 +0.8 810,098 + ABZR87_RS19775 0.83 +0.8 810,099 - ABZR87_RS19775 0.83 +0.8 810,199 + +0.1 810,199 + +0.1 810,199 + +0.2 810,199 + +0.3 810,200 - +0.9 810,200 - -2.7 810,200 - -0.4 810,200 - -0.8 810,200 - +0.4 810,200 - -0.2 810,200 - -1.3 810,238 + -0.2 810,239 - -0.2 810,332 + +0.8 810,333 - -0.2 810,333 - +0.2 810,538 + ABZR87_RS19780 0.34 -1.6 810,538 + ABZR87_RS19780 0.34 -0.0 810,538 + ABZR87_RS19780 0.34 -0.5 810,539 - ABZR87_RS19780 0.34 +0.6 810,539 - ABZR87_RS19780 0.34 -0.3 810,539 - ABZR87_RS19780 0.34 -0.0 810,539 - ABZR87_RS19780 0.34 -0.4 810,571 + ABZR87_RS19780 0.41 -0.1 810,572 - ABZR87_RS19780 0.41 -0.5 810,622 - ABZR87_RS19780 0.52 -0.7 810,622 - ABZR87_RS19780 0.52 -0.4 810,622 - ABZR87_RS19780 0.52 -0.6 810,706 + ABZR87_RS19780 0.71 +0.8 810,706 + ABZR87_RS19780 0.71 -0.9 810,706 + ABZR87_RS19780 0.71 -1.3 810,707 - ABZR87_RS19780 0.71 +0.1 810,707 - ABZR87_RS19780 0.71 +0.3 810,707 - ABZR87_RS19780 0.71 +0.6 810,707 - ABZR87_RS19780 0.71 -1.9 810,707 - ABZR87_RS19780 0.71 +0.1 810,707 - ABZR87_RS19780 0.71 +0.1 810,754 + ABZR87_RS19780 0.82 +2.8 810,754 + ABZR87_RS19780 0.82 -1.5 810,771 + ABZR87_RS19780 0.86 -0.5 810,847 + -0.7 810,962 - -0.3 810,962 - +0.1 810,962 - -1.7 810,992 - ABZR87_RS19785 0.12 -1.8 811,098 + ABZR87_RS19785 0.21 +0.7 811,098 + ABZR87_RS19785 0.21 +0.2 811,098 + ABZR87_RS19785 0.21 -0.4 811,098 + ABZR87_RS19785 0.21 -0.8 811,098 + ABZR87_RS19785 0.21 +1.6 811,099 - ABZR87_RS19785 0.21 -0.8 811,099 - ABZR87_RS19785 0.21 -1.5 811,099 - ABZR87_RS19785 0.21 -0.2
Or see this region's nucleotide sequence