Experiment: rhizosphere sample 8; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19180 and ABZR87_RS19185 overlap by 17 nucleotides ABZR87_RS19185 and ABZR87_RS19190 are separated by 105 nucleotides ABZR87_RS19190 and ABZR87_RS19195 are separated by 82 nucleotides ABZR87_RS19195 and ABZR87_RS19200 are separated by 162 nucleotides
ABZR87_RS19180: ABZR87_RS19180 - ATP-binding protein, at 667,107 to 668,651
_RS19180
ABZR87_RS19185: ABZR87_RS19185 - response regulator, at 668,635 to 669,294
_RS19185
ABZR87_RS19190: ABZR87_RS19190 - Spy/CpxP family protein refolding chaperone, at 669,400 to 669,975
_RS19190
ABZR87_RS19195: ABZR87_RS19195 - universal stress protein, at 670,058 to 670,498
_RS19195
ABZR87_RS19200: ABZR87_RS19200 - AraC family transcriptional regulator, at 670,661 to 671,578
_RS19200
Position (kb) 669
670 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 668.687 kb on - strand at 668.687 kb on - strand at 668.687 kb on - strand at 668.705 kb on - strand, within ABZR87_RS19185 at 668.731 kb on - strand, within ABZR87_RS19185 at 668.731 kb on - strand, within ABZR87_RS19185 at 668.920 kb on + strand, within ABZR87_RS19185 at 668.921 kb on - strand, within ABZR87_RS19185 at 669.038 kb on - strand, within ABZR87_RS19185 at 669.038 kb on - strand, within ABZR87_RS19185 at 669.038 kb on - strand, within ABZR87_RS19185 at 669.157 kb on + strand, within ABZR87_RS19185 at 669.158 kb on - strand, within ABZR87_RS19185 at 669.346 kb on - strand at 669.350 kb on + strand at 669.350 kb on + strand at 669.351 kb on + strand at 669.351 kb on - strand at 669.351 kb on - strand at 669.356 kb on + strand at 669.357 kb on - strand at 669.357 kb on - strand at 669.357 kb on - strand at 669.357 kb on - strand at 669.384 kb on + strand at 669.385 kb on - strand at 669.676 kb on + strand, within ABZR87_RS19190 at 669.708 kb on + strand, within ABZR87_RS19190 at 669.708 kb on + strand, within ABZR87_RS19190 at 669.709 kb on - strand, within ABZR87_RS19190 at 669.709 kb on - strand, within ABZR87_RS19190 at 669.763 kb on + strand, within ABZR87_RS19190 at 669.764 kb on - strand, within ABZR87_RS19190 at 669.973 kb on + strand at 670.066 kb on - strand at 670.089 kb on + strand at 670.089 kb on + strand at 670.090 kb on - strand at 670.212 kb on + strand, within ABZR87_RS19195 at 670.212 kb on + strand, within ABZR87_RS19195 at 670.213 kb on - strand, within ABZR87_RS19195 at 670.213 kb on - strand, within ABZR87_RS19195 at 670.213 kb on - strand, within ABZR87_RS19195 at 670.323 kb on + strand, within ABZR87_RS19195 at 670.323 kb on + strand, within ABZR87_RS19195 at 670.323 kb on + strand, within ABZR87_RS19195 at 670.323 kb on + strand, within ABZR87_RS19195 at 670.323 kb on + strand, within ABZR87_RS19195 at 670.324 kb on - strand, within ABZR87_RS19195 at 670.324 kb on - strand, within ABZR87_RS19195 at 670.324 kb on - strand, within ABZR87_RS19195 at 670.324 kb on - strand, within ABZR87_RS19195 at 670.324 kb on - strand, within ABZR87_RS19195 at 670.324 kb on - strand, within ABZR87_RS19195 at 670.324 kb on - strand, within ABZR87_RS19195 at 670.359 kb on + strand, within ABZR87_RS19195 at 670.360 kb on - strand, within ABZR87_RS19195 at 670.360 kb on - strand, within ABZR87_RS19195 at 670.393 kb on - strand, within ABZR87_RS19195 at 670.530 kb on + strand at 670.530 kb on + strand at 670.530 kb on + strand at 670.531 kb on - strand at 670.593 kb on + strand at 670.593 kb on + strand at 670.593 kb on + strand at 670.604 kb on + strand at 670.605 kb on - strand at 670.605 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 8; outgrowth in LB remove 668,687 - +1.1 668,687 - +1.4 668,687 - -0.9 668,705 - ABZR87_RS19185 0.11 -1.0 668,731 - ABZR87_RS19185 0.15 -0.5 668,731 - ABZR87_RS19185 0.15 -0.8 668,920 + ABZR87_RS19185 0.43 +1.5 668,921 - ABZR87_RS19185 0.43 +0.6 669,038 - ABZR87_RS19185 0.61 +1.1 669,038 - ABZR87_RS19185 0.61 -0.3 669,038 - ABZR87_RS19185 0.61 -2.3 669,157 + ABZR87_RS19185 0.79 -0.4 669,158 - ABZR87_RS19185 0.79 -0.9 669,346 - -1.1 669,350 + -0.1 669,350 + +1.3 669,351 + -2.7 669,351 - +0.9 669,351 - +0.4 669,356 + -0.0 669,357 - +0.5 669,357 - -0.3 669,357 - -1.9 669,357 - +0.5 669,384 + -0.1 669,385 - -0.1 669,676 + ABZR87_RS19190 0.48 +0.3 669,708 + ABZR87_RS19190 0.53 +2.9 669,708 + ABZR87_RS19190 0.53 -0.1 669,709 - ABZR87_RS19190 0.54 +0.1 669,709 - ABZR87_RS19190 0.54 +0.4 669,763 + ABZR87_RS19190 0.63 -0.6 669,764 - ABZR87_RS19190 0.63 -0.4 669,973 + -0.7 670,066 - +0.1 670,089 + +0.9 670,089 + +0.2 670,090 - +1.0 670,212 + ABZR87_RS19195 0.35 -0.3 670,212 + ABZR87_RS19195 0.35 +1.6 670,213 - ABZR87_RS19195 0.35 +1.1 670,213 - ABZR87_RS19195 0.35 +0.3 670,213 - ABZR87_RS19195 0.35 -0.7 670,323 + ABZR87_RS19195 0.60 -1.6 670,323 + ABZR87_RS19195 0.60 -2.2 670,323 + ABZR87_RS19195 0.60 +0.4 670,323 + ABZR87_RS19195 0.60 +0.1 670,323 + ABZR87_RS19195 0.60 -0.1 670,324 - ABZR87_RS19195 0.60 -1.9 670,324 - ABZR87_RS19195 0.60 +0.1 670,324 - ABZR87_RS19195 0.60 +1.1 670,324 - ABZR87_RS19195 0.60 -1.3 670,324 - ABZR87_RS19195 0.60 -1.5 670,324 - ABZR87_RS19195 0.60 +0.8 670,324 - ABZR87_RS19195 0.60 -0.3 670,359 + ABZR87_RS19195 0.68 -0.3 670,360 - ABZR87_RS19195 0.68 +1.1 670,360 - ABZR87_RS19195 0.68 -1.2 670,393 - ABZR87_RS19195 0.76 +0.4 670,530 + +0.0 670,530 + -0.7 670,530 + +0.3 670,531 - +0.2 670,593 + +0.2 670,593 + -0.6 670,593 + +0.2 670,604 + -1.0 670,605 - +0.1 670,605 - -0.3
Or see this region's nucleotide sequence